data_5AK # _chem_comp.id 5AK _chem_comp.name "8-[(2-{[2-(3-bromophenyl)ethyl]amino}-2-oxoethyl)sulfanyl]adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 Br N6 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-08-31 _chem_comp.pdbx_modified_date 2016-09-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.403 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5AK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DHQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5AK C4 C1 C 0 1 Y N N 11.265 -18.084 -44.874 -5.463 -1.355 0.116 C4 5AK 1 5AK C5 C2 C 0 1 Y N N 11.249 -17.556 -46.102 -4.636 -2.490 0.089 C5 5AK 2 5AK C6 C3 C 0 1 Y N N 12.341 -17.553 -46.861 -5.240 -3.753 0.208 C6 5AK 3 5AK C8 C4 C 0 1 Y N N 9.301 -17.343 -45.260 -3.349 -0.747 -0.118 C8 5AK 4 5AK N1 N1 N 0 1 Y N N 13.508 -18.069 -46.457 -6.561 -3.814 0.339 N1 5AK 5 5AK N3 N2 N 0 1 Y N N 12.380 -18.629 -44.365 -6.775 -1.514 0.251 N3 5AK 6 5AK CAK C5 C 0 1 Y N N 9.564 -19.692 -48.539 6.304 -0.684 0.130 CAK 5AK 7 5AK CAW C6 C 0 1 Y N N 9.829 -20.355 -47.346 7.550 -0.101 -0.016 CAW 5AK 8 5AK BR BR1 BR 0 0 N N N 11.548 -21.022 -47.005 8.567 0.356 1.512 BR 5AK 9 5AK CAI C7 C 0 1 Y N N 8.819 -20.523 -46.406 8.053 0.147 -1.281 CAI 5AK 10 5AK CAG C8 C 0 1 Y N N 7.545 -20.028 -46.658 7.310 -0.187 -2.398 CAG 5AK 11 5AK CAJ C9 C 0 1 Y N N 7.280 -19.365 -47.851 6.065 -0.769 -2.251 CAJ 5AK 12 5AK CAY C10 C 0 1 Y N N 8.290 -19.197 -48.792 5.564 -1.022 -0.987 CAY 5AK 13 5AK CAN C11 C 0 1 N N N 8.026 -18.535 -49.984 4.207 -1.657 -0.827 CAN 5AK 14 5AK CAM C12 C 0 1 N N N 7.248 -17.249 -49.693 3.137 -0.565 -0.766 CAM 5AK 15 5AK NAS N3 N 0 1 N N N 7.691 -16.689 -48.408 1.818 -1.183 -0.611 NAS 5AK 16 5AK CAV C13 C 0 1 N N N 6.840 -16.092 -47.563 0.717 -0.409 -0.533 CAV 5AK 17 5AK OAB O1 O 0 1 N N N 5.636 -15.961 -47.778 0.819 0.798 -0.591 OAB 5AK 18 5AK CAO C14 C 0 1 N N N 7.472 -15.567 -46.273 -0.640 -1.044 -0.373 CAO 5AK 19 5AK SAU S1 S 0 1 N N N 7.611 -16.931 -45.061 -1.906 0.248 -0.300 SAU 5AK 20 5AK N7 N4 N 0 1 Y N N 10.023 -17.093 -46.343 -3.359 -2.056 -0.055 N7 5AK 21 5AK N6 N5 N 0 1 N N N 12.210 -17.002 -48.065 -4.476 -4.908 0.187 N6 5AK 22 5AK C2 C15 C 0 1 Y N N 13.652 -18.682 -45.119 -7.297 -2.718 0.359 C2 5AK 23 5AK N9 N6 N 0 1 Y N N 10.048 -17.950 -44.350 -4.627 -0.269 -0.011 N9 5AK 24 5AK "C1'" C16 C 0 1 N N R 9.613 -18.395 -43.008 -5.031 1.139 -0.030 "C1'" 5AK 25 5AK "O4'" O2 O 0 1 N N N 8.507 -19.300 -43.138 -4.250 1.878 -0.993 "O4'" 5AK 26 5AK "C4'" C17 C 0 1 N N R 7.914 -19.313 -41.832 -4.320 3.264 -0.615 "C4'" 5AK 27 5AK "C5'" C18 C 0 1 N N N 6.478 -19.831 -41.928 -2.998 3.960 -0.946 "C5'" 5AK 28 5AK "O5'" O3 O 0 1 N N N 6.451 -21.225 -41.613 -2.822 3.999 -2.364 "O5'" 5AK 29 5AK "C3'" C19 C 0 1 N N S 7.899 -17.849 -41.421 -4.571 3.312 0.904 "C3'" 5AK 30 5AK "O3'" O4 O 0 1 N N N 8.169 -17.743 -40.016 -5.789 4.005 1.188 "O3'" 5AK 31 5AK "C2'" C20 C 0 1 N N R 9.047 -17.233 -42.206 -4.686 1.824 1.317 "C2'" 5AK 32 5AK "O2'" O5 O 0 1 N N N 10.044 -16.748 -41.296 -5.737 1.638 2.267 "O2'" 5AK 33 5AK H1 H1 H 0 1 N N N 10.349 -19.562 -49.270 5.912 -0.878 1.117 H1 5AK 34 5AK H2 H2 H 0 1 N N N 9.024 -21.038 -45.479 9.026 0.603 -1.395 H2 5AK 35 5AK H3 H3 H 0 1 N N N 6.761 -20.158 -45.927 7.702 0.007 -3.385 H3 5AK 36 5AK H4 H4 H 0 1 N N N 6.290 -18.981 -48.047 5.485 -1.030 -3.123 H4 5AK 37 5AK H5 H5 H 0 1 N N N 7.428 -19.185 -50.639 4.010 -2.311 -1.677 H5 5AK 38 5AK H6 H6 H 0 1 N N N 8.974 -18.285 -50.482 4.185 -2.241 0.093 H6 5AK 39 5AK H7 H7 H 0 1 N N N 7.433 -16.519 -50.495 3.335 0.089 0.084 H7 5AK 40 5AK H8 H8 H 0 1 N N N 6.172 -17.474 -49.644 3.160 0.018 -1.686 H8 5AK 41 5AK H9 H9 H 0 1 N N N 8.657 -16.756 -48.157 1.737 -2.148 -0.564 H9 5AK 42 5AK H10 H10 H 0 1 N N N 8.473 -15.168 -46.492 -0.838 -1.698 -1.223 H10 5AK 43 5AK H11 H11 H 0 1 N N N 6.842 -14.768 -45.855 -0.663 -1.627 0.547 H11 5AK 44 5AK H12 H12 H 0 1 N N N 13.082 -17.052 -48.552 -4.904 -5.775 0.269 H12 5AK 45 5AK H13 H13 H 0 1 N N N 11.511 -17.495 -48.583 -3.512 -4.851 0.091 H13 5AK 46 5AK H14 H14 H 0 1 N N N 14.567 -19.113 -44.741 -8.368 -2.812 0.467 H14 5AK 47 5AK H15 H15 H 0 1 N N N 10.448 -18.859 -42.463 -6.095 1.229 -0.245 H15 5AK 48 5AK H16 H16 H 0 1 N N N 8.497 -19.914 -41.118 -5.140 3.751 -1.143 H16 5AK 49 5AK H17 H17 H 0 1 N N N 5.842 -19.282 -41.217 -3.016 4.977 -0.554 H17 5AK 50 5AK H18 H18 H 0 1 N N N 6.101 -19.679 -42.950 -2.174 3.410 -0.492 H18 5AK 51 5AK H19 H19 H 0 1 N N N 5.559 -21.546 -41.673 -2.002 4.427 -2.646 H19 5AK 52 5AK H20 H20 H 0 1 N N N 6.943 -17.378 -41.694 -3.735 3.788 1.415 H20 5AK 53 5AK H21 H21 H 0 1 N N N 7.452 -18.128 -39.525 -5.793 4.927 0.896 H21 5AK 54 5AK H22 H22 H 0 1 N N N 8.680 -16.441 -42.875 -3.739 1.455 1.710 H22 5AK 55 5AK H23 H23 H 0 1 N N N 9.690 -16.022 -40.795 -5.568 2.049 3.126 H23 5AK 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5AK CAN CAM SING N N 1 5AK CAN CAY SING N N 2 5AK CAM NAS SING N N 3 5AK CAY CAK DOUB Y N 4 5AK CAY CAJ SING Y N 5 5AK CAK CAW SING Y N 6 5AK NAS CAV SING N N 7 5AK N6 C6 SING N N 8 5AK CAJ CAG DOUB Y N 9 5AK OAB CAV DOUB N N 10 5AK CAV CAO SING N N 11 5AK CAW BR SING N N 12 5AK CAW CAI DOUB Y N 13 5AK C6 N1 DOUB Y N 14 5AK C6 C5 SING Y N 15 5AK CAG CAI SING Y N 16 5AK N1 C2 SING Y N 17 5AK N7 C5 SING Y N 18 5AK N7 C8 DOUB Y N 19 5AK CAO SAU SING N N 20 5AK C5 C4 DOUB Y N 21 5AK C8 SAU SING N N 22 5AK C8 N9 SING Y N 23 5AK C2 N3 DOUB Y N 24 5AK C4 N3 SING Y N 25 5AK C4 N9 SING Y N 26 5AK N9 "C1'" SING N N 27 5AK "O4'" "C1'" SING N N 28 5AK "O4'" "C4'" SING N N 29 5AK "C1'" "C2'" SING N N 30 5AK "C2'" "C3'" SING N N 31 5AK "C2'" "O2'" SING N N 32 5AK "C5'" "C4'" SING N N 33 5AK "C5'" "O5'" SING N N 34 5AK "C4'" "C3'" SING N N 35 5AK "C3'" "O3'" SING N N 36 5AK CAK H1 SING N N 37 5AK CAI H2 SING N N 38 5AK CAG H3 SING N N 39 5AK CAJ H4 SING N N 40 5AK CAN H5 SING N N 41 5AK CAN H6 SING N N 42 5AK CAM H7 SING N N 43 5AK CAM H8 SING N N 44 5AK NAS H9 SING N N 45 5AK CAO H10 SING N N 46 5AK CAO H11 SING N N 47 5AK N6 H12 SING N N 48 5AK N6 H13 SING N N 49 5AK C2 H14 SING N N 50 5AK "C1'" H15 SING N N 51 5AK "C4'" H16 SING N N 52 5AK "C5'" H17 SING N N 53 5AK "C5'" H18 SING N N 54 5AK "O5'" H19 SING N N 55 5AK "C3'" H20 SING N N 56 5AK "O3'" H21 SING N N 57 5AK "C2'" H22 SING N N 58 5AK "O2'" H23 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5AK SMILES ACDLabs 12.01 "c31ncnc(c1nc(SCC(NCCc2cc(Br)ccc2)=O)n3C4C(C(C(O4)CO)O)O)N" 5AK InChI InChI 1.03 "InChI=1S/C20H23BrN6O5S/c21-11-3-1-2-10(6-11)4-5-23-13(29)8-33-20-26-14-17(22)24-9-25-18(14)27(20)19-16(31)15(30)12(7-28)32-19/h1-3,6,9,12,15-16,19,28,30-31H,4-5,7-8H2,(H,23,29)(H2,22,24,25)/t12-,15-,16-,19-/m1/s1" 5AK InChIKey InChI 1.03 WJGLUXUMEHFNOZ-BGIGGGFGSA-N 5AK SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c(SCC(=O)NCCc4cccc(Br)c4)nc12" 5AK SMILES CACTVS 3.385 "Nc1ncnc2n([CH]3O[CH](CO)[CH](O)[CH]3O)c(SCC(=O)NCCc4cccc(Br)c4)nc12" 5AK SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(cc(c1)Br)CCNC(=O)CSc2nc3c(ncnc3n2[C@H]4[C@@H]([C@@H]([C@H](O4)CO)O)O)N" 5AK SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(cc(c1)Br)CCNC(=O)CSc2nc3c(ncnc3n2C4C(C(C(O4)CO)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5AK "SYSTEMATIC NAME" ACDLabs 12.01 "8-[(2-{[2-(3-bromophenyl)ethyl]amino}-2-oxoethyl)sulfanyl]adenosine" 5AK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[6-azanyl-9-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanyl-N-[2-(3-bromophenyl)ethyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5AK "Create component" 2015-08-31 EBI 5AK "Initial release" 2016-09-14 RCSB #