data_5AR # _chem_comp.id 5AR _chem_comp.name "(2S)-2-amino-4-[5-(4-aminobutyl)-1,3,4-oxadiazol-2-yl]butanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-08-31 _chem_comp.pdbx_modified_date 2020-06-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 242.275 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5AR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DGJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5AR O01 O1 O 0 1 N N N 17.537 -56.316 136.406 5.461 -1.178 1.145 O01 5AR 1 5AR C02 C1 C 0 1 N N N 17.639 -57.420 136.849 5.126 -0.241 0.461 C02 5AR 2 5AR N18 N3 N 0 1 N N N 14.284 -54.088 132.920 -7.578 -1.042 0.240 N18 5AR 3 5AR C27 C17 C 0 1 N N S 16.662 -57.990 137.861 4.054 -0.415 -0.585 C27 5AR 4 5AR C28 C18 C 0 1 N N N 15.593 -58.790 137.121 2.723 0.111 -0.045 C28 5AR 5 5AR C29 C19 C 0 1 N N N 14.856 -59.728 138.107 1.665 0.049 -1.147 C29 5AR 6 5AR N35 N4 N 0 1 N N N 16.031 -56.917 138.585 3.920 -1.841 -0.914 N35 5AR 7 5AR H22 H22 H 0 1 N N N 14.317 -55.086 132.872 -8.290 -1.281 -0.433 H22 5AR 8 5AR H23 H23 H 0 1 N N N 13.775 -52.082 132.671 -5.972 -1.563 -1.010 H23 5AR 9 5AR H24 H24 H 0 1 N N N 12.604 -53.025 133.578 -6.467 0.145 -1.091 H24 5AR 10 5AR H29 H29 H 0 1 N N N 17.200 -58.656 138.552 4.328 0.140 -1.482 H29 5AR 11 5AR H30 H30 H 0 1 N N N 14.869 -58.097 136.667 2.406 -0.502 0.799 H30 5AR 12 5AR H31 H31 H 0 1 N N N 16.069 -59.392 136.333 2.847 1.143 0.283 H31 5AR 13 5AR H32 H32 H 0 1 N N N 15.157 -60.772 138.278 1.982 0.662 -1.991 H32 5AR 14 5AR H33 H33 H 0 1 N N N 14.300 -59.359 138.981 1.541 -0.984 -1.474 H33 5AR 15 5AR H35 H35 H 0 1 N N N 15.388 -57.296 139.251 3.667 -2.378 -0.099 H35 5AR 16 5AR N1 N5 N 0 1 Y N N ? ? ? -0.057 1.803 -0.648 N1 5AR 17 5AR N2 N6 N 0 1 Y N N ? ? ? -1.221 1.881 -0.105 N2 5AR 18 5AR C4 C24 C 0 1 Y N N ? ? ? -1.592 0.698 0.293 C4 5AR 19 5AR O1 O7 O 0 1 Y N N ? ? ? -0.606 -0.160 -0.020 O1 5AR 20 5AR C5 C25 C 0 1 Y N N ? ? ? 0.354 0.567 -0.615 C5 5AR 21 5AR C1 C26 C 0 1 N N N ? ? ? -2.890 0.354 0.978 C1 5AR 22 5AR C2 C27 C 0 1 N N N ? ? ? -3.943 -0.002 -0.073 C2 5AR 23 5AR C3 C28 C 0 1 N N N ? ? ? -5.260 -0.351 0.623 C3 5AR 24 5AR C6 C29 C 0 1 N N N ? ? ? -6.313 -0.707 -0.428 C6 5AR 25 5AR H34 H34 H 0 1 N N N ? ? ? -2.736 -0.498 1.641 H34 5AR 26 5AR H45 H45 H 0 1 N N N ? ? ? -3.231 1.210 1.560 H45 5AR 27 5AR H46 H46 H 0 1 N N N ? ? ? -4.097 0.850 -0.736 H46 5AR 28 5AR H47 H47 H 0 1 N N N ? ? ? -3.601 -0.858 -0.655 H47 5AR 29 5AR H48 H48 H 0 1 N N N ? ? ? -5.106 -1.203 1.286 H48 5AR 30 5AR H49 H49 H 0 1 N N N ? ? ? -5.602 0.505 1.205 H49 5AR 31 5AR H2 H2 H 0 1 N Y N 15.129 -53.746 133.330 -7.883 -0.288 0.837 H2 5AR 32 5AR OXT OXT O 0 1 N Y N 18.733 -58.304 136.440 5.703 0.958 0.636 OXT 5AR 33 5AR HXT HXT H 0 1 N Y N 19.286 -57.855 135.811 6.382 1.023 1.321 HXT 5AR 34 5AR H1 H1 H 0 1 N Y N 16.728 -56.382 139.062 3.253 -1.978 -1.659 H1 5AR 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5AR C6 N18 SING N N 1 5AR O01 C02 DOUB N N 2 5AR C02 C27 SING N N 3 5AR C28 C27 SING N N 4 5AR C28 C29 SING N N 5 5AR C27 N35 SING N N 6 5AR N18 H22 SING N N 7 5AR C6 H23 SING N N 8 5AR C6 H24 SING N N 9 5AR C27 H29 SING N N 10 5AR C28 H30 SING N N 11 5AR C28 H31 SING N N 12 5AR C29 H32 SING N N 13 5AR C29 H33 SING N N 14 5AR N35 H35 SING N N 15 5AR C29 C5 SING N N 16 5AR C5 N1 DOUB Y N 17 5AR N1 N2 SING Y N 18 5AR N2 C4 DOUB Y N 19 5AR C4 O1 SING Y N 20 5AR O1 C5 SING Y N 21 5AR C4 C1 SING N N 22 5AR C1 C2 SING N N 23 5AR C2 C3 SING N N 24 5AR C3 C6 SING N N 25 5AR C1 H34 SING N N 26 5AR C1 H45 SING N N 27 5AR C2 H46 SING N N 28 5AR C2 H47 SING N N 29 5AR C3 H48 SING N N 30 5AR C3 H49 SING N N 31 5AR N18 H2 SING N N 32 5AR C02 OXT SING N N 33 5AR OXT HXT SING N N 34 5AR N35 H1 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5AR SMILES ACDLabs 12.01 "O=C(C(N)CCc1nnc(o1)CCCCN)O" 5AR InChI InChI 1.03 "InChI=1S/C10H18N4O3/c11-6-2-1-3-8-13-14-9(17-8)5-4-7(12)10(15)16/h7H,1-6,11-12H2,(H,15,16)/t7-/m0/s1" 5AR InChIKey InChI 1.03 AXSUQOHGXNNCKE-ZETCQYMHSA-N 5AR SMILES_CANONICAL CACTVS 3.385 "NCCCCc1oc(CC[C@H](N)C(O)=O)nn1" 5AR SMILES CACTVS 3.385 "NCCCCc1oc(CC[CH](N)C(O)=O)nn1" 5AR SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C(CCN)Cc1nnc(o1)CC[C@@H](C(=O)O)N" 5AR SMILES "OpenEye OEToolkits" 1.9.2 "C(CCN)Cc1nnc(o1)CCC(C(=O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5AR "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-amino-4-[5-(4-aminobutyl)-1,3,4-oxadiazol-2-yl]butanoic acid" 5AR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-4-[5-(4-azanylbutyl)-1,3,4-oxadiazol-2-yl]butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5AR "Create component" 2015-08-31 RCSB 5AR "Initial release" 2016-02-10 RCSB 5AR "Other modification" 2020-06-27 RCSB ##