data_5AT # _chem_comp.id 5AT _chem_comp.name "5'-AMINO-5'-DEOXYTHYMIDINE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H15 N3 O4" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-08-12 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 241.244 _chem_comp.one_letter_code T _chem_comp.three_letter_code 5AT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1C95 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5AT "N5'" N5* N 0 1 N N N -0.472 0.811 13.110 2.334 -0.731 -3.804 "N5'" 5AT 1 5AT N1 N1 N 0 1 N N N -0.290 1.936 9.852 -0.241 -0.393 0.763 N1 5AT 2 5AT C6 C6 C 0 1 N N N 0.421 0.818 10.221 -0.373 -1.224 1.842 C6 5AT 3 5AT C2 C2 C 0 1 N N N 0.303 2.979 9.178 0.158 0.881 0.924 C2 5AT 4 5AT O2 O2 O 0 1 N N N -0.302 3.978 8.828 0.268 1.602 -0.047 O2 5AT 5 5AT N3 N3 N 0 1 N N N 1.639 2.808 8.927 0.436 1.368 2.147 N3 5AT 6 5AT C4 C4 C 0 1 N N N 2.419 1.725 9.272 0.314 0.583 3.236 C4 5AT 7 5AT O4 O4 O 0 1 N N N 3.613 1.720 8.995 0.566 1.023 4.343 O4 5AT 8 5AT C5 C5 C 0 1 N N N 1.729 0.665 9.971 -0.099 -0.761 3.080 C5 5AT 9 5AT C7 C7 C 0 1 N N N 2.508 -0.531 10.422 -0.240 -1.661 4.280 C7 5AT 10 5AT "C2'" C2* C 0 1 N N N -2.493 0.741 9.891 -1.670 -0.064 -1.213 "C2'" 5AT 11 5AT "C5'" C5* C 0 1 N N N -1.827 0.222 12.943 1.227 0.210 -3.588 "C5'" 5AT 12 5AT "C4'" C4* C 0 1 N N R -2.672 1.232 12.202 0.138 -0.465 -2.753 "C4'" 5AT 13 5AT "O4'" O4* O 0 1 N N N -1.797 2.219 11.608 0.619 -0.756 -1.421 "O4'" 5AT 14 5AT "C1'" C1* C 0 1 N N R -1.716 2.017 10.200 -0.537 -0.896 -0.580 "C1'" 5AT 15 5AT "C3'" C3* C 0 1 N N S -3.478 0.669 11.040 -1.043 0.506 -2.508 "C3'" 5AT 16 5AT "O3'" O3* O 0 1 N N N -4.638 1.474 10.800 -1.976 0.458 -3.590 "O3'" 5AT 17 5AT HN51 1HN5 H 0 0 N N N 0.218 0.506 12.506 3.025 -0.245 -4.356 HN51 5AT 18 5AT HN52 2HN5 H 0 0 N N N -0.488 1.724 13.562 2.751 -0.901 -2.901 HN52 5AT 19 5AT H6 H6 H 0 1 N N N -0.112 0.022 10.749 -0.694 -2.246 1.703 H6 5AT 20 5AT H3 H3 H 0 1 N N N 2.106 3.560 8.439 0.723 2.290 2.246 H3 5AT 21 5AT H71 H71 H 0 1 N N N 2.066 -0.931 11.334 0.023 -1.109 5.182 H71 5AT 22 5AT H72 H72 H 0 1 N N N 3.540 -0.240 10.617 -1.270 -2.009 4.356 H72 5AT 23 5AT H73 H73 H 0 1 N N N 2.487 -1.294 9.644 0.425 -2.518 4.172 H73 5AT 24 5AT "H2'" 1H2* H 0 1 N N N -1.853 -0.137 9.863 -2.524 -0.699 -1.449 "H2'" 5AT 25 5AT "H2''" 2H2* H 0 0 N N N -2.999 0.802 8.934 -1.968 0.744 -0.545 "H2''" 5AT 26 5AT "H5'" 1H5* H 0 1 N N N -2.289 0.025 13.895 0.813 0.511 -4.550 "H5'" 5AT 27 5AT "H5''" 2H5* H 0 0 N N N -1.753 -0.707 12.364 1.597 1.089 -3.060 "H5''" 5AT 28 5AT "H4'" H4* H 0 1 N N N -3.385 1.657 12.910 -0.208 -1.376 -3.241 "H4'" 5AT 29 5AT "H1'" H1* H 0 1 N N N -2.154 2.882 9.701 -0.833 -1.944 -0.527 "H1'" 5AT 30 5AT "H3'" H3* H 0 1 N N N -3.780 -0.354 11.248 -0.684 1.523 -2.351 "H3'" 5AT 31 5AT "HO3'" H3T H 0 0 N Y N -5.255 1.428 11.520 -2.728 1.011 -3.335 "HO3'" 5AT 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5AT "N5'" "C5'" SING N N 1 5AT "N5'" HN51 SING N N 2 5AT "N5'" HN52 SING N N 3 5AT N1 C6 SING N N 4 5AT N1 C2 SING N N 5 5AT N1 "C1'" SING N N 6 5AT C6 C5 DOUB N N 7 5AT C6 H6 SING N N 8 5AT C2 O2 DOUB N N 9 5AT C2 N3 SING N N 10 5AT N3 C4 SING N N 11 5AT N3 H3 SING N N 12 5AT C4 O4 DOUB N N 13 5AT C4 C5 SING N N 14 5AT C5 C7 SING N N 15 5AT C7 H71 SING N N 16 5AT C7 H72 SING N N 17 5AT C7 H73 SING N N 18 5AT "C2'" "C1'" SING N N 19 5AT "C2'" "C3'" SING N N 20 5AT "C2'" "H2'" SING N N 21 5AT "C2'" "H2''" SING N N 22 5AT "C5'" "C4'" SING N N 23 5AT "C5'" "H5'" SING N N 24 5AT "C5'" "H5''" SING N N 25 5AT "C4'" "O4'" SING N N 26 5AT "C4'" "C3'" SING N N 27 5AT "C4'" "H4'" SING N N 28 5AT "O4'" "C1'" SING N N 29 5AT "C1'" "H1'" SING N N 30 5AT "C3'" "O3'" SING N N 31 5AT "C3'" "H3'" SING N N 32 5AT "O3'" "HO3'" SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5AT SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2)CN" 5AT SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@H]2C[C@H](O)[C@@H](CN)O2)C(=O)NC1=O" 5AT SMILES CACTVS 3.341 "CC1=CN([CH]2C[CH](O)[CH](CN)O2)C(=O)NC1=O" 5AT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CN)O" 5AT SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CN)O" 5AT InChI InChI 1.03 "InChI=1S/C10H15N3O4/c1-5-4-13(10(16)12-9(5)15)8-2-6(14)7(3-11)17-8/h4,6-8,14H,2-3,11H2,1H3,(H,12,15,16)/t6-,7+,8+/m0/s1" 5AT InChIKey InChI 1.03 PYWLBQPICCQJFF-XLPZGREQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5AT "SYSTEMATIC NAME" ACDLabs 10.04 "5'-amino-5'-deoxythymidine" 5AT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,4S,5R)-5-(aminomethyl)-4-hydroxy-oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5AT "Create component" 1999-08-12 RCSB 5AT "Modify descriptor" 2011-06-04 RCSB #