data_5BV # _chem_comp.id 5BV _chem_comp.name "(2R,3R)-3-(glycyloxy)-2-methylnonanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H23 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-09-03 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 245.315 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5BV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DIR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5BV O34 O34 O 0 1 N N N N N N -50.455 3.759 15.203 2.070 1.096 -1.065 O34 5BV 1 5BV O35 O35 O 0 1 N N N Y N N -49.444 2.554 16.803 0.792 0.575 0.660 O35 5BV 2 5BV O O46 O 0 1 N N N Y N Y -48.976 -0.446 15.400 3.569 -1.954 -0.704 O46 5BV 3 5BV N N31 N 0 1 N N N Y Y N -47.996 5.249 15.179 2.873 3.469 -0.287 N31 5BV 4 5BV C32 C32 C 0 1 N N N Y N N -48.537 4.689 16.400 1.967 2.746 0.614 C32 5BV 5 5BV C33 C33 C 0 1 N N N Y N N -49.585 3.635 16.069 1.614 1.412 0.008 C33 5BV 6 5BV C36 C36 C 0 1 N N R Y N N -50.571 1.649 16.882 0.496 -0.693 0.017 C36 5BV 7 5BV C37 C37 C 0 1 N N N N N N -51.570 2.233 17.873 -0.904 -1.157 0.425 C37 5BV 8 5BV C38 C38 C 0 1 N N N N N N -52.953 2.348 17.244 -1.945 -0.175 -0.116 C38 5BV 9 5BV C39 C39 C 0 1 N N N N N N -53.992 2.428 18.361 -3.345 -0.639 0.292 C39 5BV 10 5BV C40 C40 C 0 1 N N N N N N -53.823 3.740 19.127 -4.386 0.343 -0.249 C40 5BV 11 5BV C41 C41 C 0 1 N N N N N N -54.659 3.700 20.405 -5.785 -0.121 0.159 C41 5BV 12 5BV C42 C42 C 0 1 N N N N N N -54.261 4.872 21.300 -6.826 0.861 -0.382 C42 5BV 13 5BV C43 C43 C 0 1 N N R Y N N -50.009 0.367 17.439 1.526 -1.738 0.449 C43 5BV 14 5BV C44 C44 C 0 1 N N N N N N -51.095 -0.709 17.474 1.214 -3.073 -0.229 C44 5BV 15 5BV C C45 C 0 1 N N N Y N Y -48.823 -0.127 16.576 2.904 -1.280 0.048 C45 5BV 16 5BV H H1 H 0 1 N N N Y Y N -47.309 5.940 15.404 2.466 3.570 -1.205 H1 5BV 17 5BV H2 H2 H 0 1 N Y N Y Y N -47.573 4.522 14.638 3.125 4.367 0.097 H2 5BV 18 5BV H4 H4 H 0 1 N N N Y N N -47.725 4.226 16.980 2.458 2.590 1.575 H4 5BV 19 5BV H5 H5 H 0 1 N N N Y N N -49.001 5.490 16.994 1.058 3.330 0.762 H5 5BV 20 5BV H6 H6 H 0 1 N N N Y N N -51.040 1.485 15.901 0.536 -0.569 -1.065 H6 5BV 21 5BV H7 H7 H 0 1 N N N N N N -51.628 1.578 18.755 -1.092 -2.149 0.014 H7 5BV 22 5BV H8 H8 H 0 1 N N N N N N -51.230 3.233 18.181 -0.971 -1.195 1.512 H8 5BV 23 5BV H9 H9 H 0 1 N N N N N N -53.004 3.256 16.625 -1.757 0.817 0.295 H9 5BV 24 5BV H10 H10 H 0 1 N N N N N N -53.150 1.465 16.618 -1.878 -0.136 -1.203 H10 5BV 25 5BV H11 H11 H 0 1 N N N N N N -55.001 2.386 17.926 -3.533 -1.631 -0.119 H11 5BV 26 5BV H12 H12 H 0 1 N N N N N N -53.854 1.582 19.050 -3.412 -0.678 1.379 H12 5BV 27 5BV H13 H13 H 0 1 N N N N N N -52.763 3.878 19.387 -4.198 1.335 0.162 H13 5BV 28 5BV H14 H14 H 0 1 N N N N N N -54.158 4.577 18.497 -4.318 0.381 -1.337 H14 5BV 29 5BV H15 H15 H 0 1 N N N N N N -55.726 3.777 20.150 -5.973 -1.113 -0.252 H15 5BV 30 5BV H16 H16 H 0 1 N N N N N N -54.477 2.753 20.935 -5.853 -0.160 1.246 H16 5BV 31 5BV H17 H17 H 0 1 N N N N N N -54.860 4.849 22.223 -6.638 1.852 0.029 H17 5BV 32 5BV H18 H18 H 0 1 N N N N N N -53.194 4.794 21.554 -6.759 0.899 -1.469 H18 5BV 33 5BV H19 H19 H 0 1 N N N N N N -54.443 5.818 20.768 -7.823 0.530 -0.092 H19 5BV 34 5BV H20 H20 H 0 1 N N N Y N N -49.650 0.544 18.463 1.485 -1.862 1.532 H20 5BV 35 5BV H21 H21 H 0 1 N N N N N N -51.939 -0.359 18.087 1.254 -2.949 -1.311 H21 5BV 36 5BV H22 H22 H 0 1 N N N N N N -51.444 -0.911 16.451 1.948 -3.818 0.080 H22 5BV 37 5BV H23 H23 H 0 1 N N N N N N -50.683 -1.631 17.909 0.216 -3.404 0.062 H23 5BV 38 5BV OXT O1 O 0 1 N Y N Y N Y -47.617 -0.222 17.169 3.394 -0.125 0.525 O1 5BV 39 5BV HXT H3 H 0 1 N Y N Y N Y -46.982 -0.554 16.545 4.283 0.126 0.239 H3 5BV 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BV N C32 SING N N 1 5BV O34 C33 DOUB N N 2 5BV O C DOUB N N 3 5BV C33 C32 SING N N 4 5BV C33 O35 SING N N 5 5BV C C43 SING N N 6 5BV O35 C36 SING N N 7 5BV C36 C43 SING N N 8 5BV C36 C37 SING N N 9 5BV C38 C37 SING N N 10 5BV C38 C39 SING N N 11 5BV C43 C44 SING N N 12 5BV C39 C40 SING N N 13 5BV C40 C41 SING N N 14 5BV C41 C42 SING N N 15 5BV N H SING N N 16 5BV N H2 SING N N 17 5BV C32 H4 SING N N 18 5BV C32 H5 SING N N 19 5BV C36 H6 SING N N 20 5BV C37 H7 SING N N 21 5BV C37 H8 SING N N 22 5BV C38 H9 SING N N 23 5BV C38 H10 SING N N 24 5BV C39 H11 SING N N 25 5BV C39 H12 SING N N 26 5BV C40 H13 SING N N 27 5BV C40 H14 SING N N 28 5BV C41 H15 SING N N 29 5BV C41 H16 SING N N 30 5BV C42 H17 SING N N 31 5BV C42 H18 SING N N 32 5BV C42 H19 SING N N 33 5BV C43 H20 SING N N 34 5BV C44 H21 SING N N 35 5BV C44 H22 SING N N 36 5BV C44 H23 SING N N 37 5BV C OXT SING N N 38 5BV OXT HXT SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5BV SMILES ACDLabs 12.01 "O=C(OC(C(C)C(=O)O)CCCCCC)CN" 5BV InChI InChI 1.03 "InChI=1S/C12H23NO4/c1-3-4-5-6-7-10(9(2)12(15)16)17-11(14)8-13/h9-10H,3-8,13H2,1-2H3,(H,15,16)/t9-,10-/m1/s1" 5BV InChIKey InChI 1.03 UBRONVWKPIWEHT-NXEZZACHSA-N 5BV SMILES_CANONICAL CACTVS 3.385 "CCCCCC[C@@H](OC(=O)CN)[C@@H](C)C(O)=O" 5BV SMILES CACTVS 3.385 "CCCCCC[CH](OC(=O)CN)[CH](C)C(O)=O" 5BV SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCCCCC[C@H]([C@@H](C)C(=O)O)OC(=O)CN" 5BV SMILES "OpenEye OEToolkits" 1.9.2 "CCCCCCC(C(C)C(=O)O)OC(=O)CN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5BV "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R)-3-(glycyloxy)-2-methylnonanoic acid" 5BV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R,3R)-3-(2-azanylethanoyloxy)-2-methyl-nonanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5BV "Create component" 2015-09-03 EBI 5BV "Initial release" 2016-03-02 RCSB 5BV "Modify backbone" 2023-11-03 PDBE 5BV "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 5BV _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #