data_5CI # _chem_comp.id 5CI _chem_comp.name "8-bromo-5'-{[3-carboxy-2-(carboxymethyl)-2-hydroxypropanoyl]amino}-5'-deoxyadenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H19 Br N6 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-01-06 _chem_comp.pdbx_modified_date 2012-03-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 519.261 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5CI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3V8N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5CI O41 O41 O 0 1 N N N 11.077 9.628 16.625 -6.903 -3.039 -0.054 O41 5CI 1 5CI C51 C51 C 0 1 N N N 11.066 10.321 15.607 -5.939 -2.293 0.509 C51 5CI 2 5CI O31 O31 O 0 1 N N N 10.793 11.525 15.541 -5.782 -2.313 1.707 O31 5CI 3 5CI C41 C41 C 0 1 N N N 11.372 9.596 14.320 -5.052 -1.432 -0.353 C41 5CI 4 5CI C31 C31 C 0 1 N N N 12.857 9.434 14.091 -4.152 -0.574 0.539 C31 5CI 5 5CI C21 C21 C 0 1 N N N 13.236 7.973 14.257 -5.015 0.383 1.365 C21 5CI 6 5CI C11 C11 C 0 1 N N N 14.234 7.737 15.394 -5.751 1.319 0.441 C11 5CI 7 5CI O21 O21 O 0 1 N N N 15.091 8.604 15.605 -5.626 1.209 -0.756 O21 5CI 8 5CI O11 O11 O 0 1 N N N 14.148 6.661 15.990 -6.545 2.275 0.948 O11 5CI 9 5CI O71 O71 O 0 1 N N N 13.537 10.202 15.054 -3.406 -1.420 1.416 O71 5CI 10 5CI C61 C61 C 0 1 N N N 13.101 10.029 12.719 -3.203 0.220 -0.321 C61 5CI 11 5CI O51 O51 O 0 1 N N N 12.700 11.162 12.530 -3.469 0.426 -1.487 O51 5CI 12 5CI "N5'" N5* N 0 1 N N N 13.678 9.304 11.768 -2.060 0.702 0.205 N5* 5CI 13 5CI "C5'" C5* C 0 1 N N N 13.841 9.876 10.416 -1.191 1.565 -0.599 C5* 5CI 14 5CI "C4'" C4* C 0 1 N N R 15.262 9.753 9.826 0.031 1.970 0.228 C4* 5CI 15 5CI "O4'" O4* O 0 1 N N N 15.660 8.418 9.634 0.847 0.817 0.492 O4* 5CI 16 5CI "C3'" C3* C 0 1 N N S 15.299 10.261 8.393 0.892 2.972 -0.565 C3* 5CI 17 5CI "O3'" O3* O 0 1 N N N 15.313 11.673 8.317 0.999 4.210 0.142 O3* 5CI 18 5CI "C2'" C2* C 0 1 N N R 16.619 9.683 7.941 2.275 2.284 -0.670 C2* 5CI 19 5CI "O2'" O2* O 0 1 N N N 17.659 10.591 8.172 3.330 3.228 -0.475 O2* 5CI 20 5CI "C1'" C1* C 0 1 N N R 16.823 8.496 8.851 2.220 1.264 0.500 C1* 5CI 21 5CI N9 N9 N 0 1 Y N N 16.913 7.206 8.141 3.131 0.144 0.252 N9 5CI 22 5CI C8 C8 C 0 1 Y N N 16.018 6.610 7.358 2.932 -0.877 -0.631 C8 5CI 23 5CI BR8 BR8 BR 0 0 N N N 14.329 7.239 6.811 1.412 -1.074 -1.738 BR8 5CI 24 5CI N7 N7 N 0 1 Y N N 16.477 5.453 6.956 3.945 -1.695 -0.599 N7 5CI 25 5CI C5 C5 C 0 1 Y N N 17.669 5.293 7.473 4.854 -1.253 0.303 C5 5CI 26 5CI C4 C4 C 0 1 Y N N 17.942 6.396 8.225 4.343 -0.068 0.860 C4 5CI 27 5CI N3 N3 N 0 1 Y N N 19.093 6.476 8.870 5.055 0.573 1.780 N3 5CI 28 5CI C2 C2 C 0 1 Y N N 19.963 5.514 8.785 6.222 0.106 2.172 C2 5CI 29 5CI N1 N1 N 0 1 Y N N 19.740 4.447 8.074 6.741 -1.005 1.681 N1 5CI 30 5CI C6 C6 C 0 1 Y N N 18.614 4.300 7.403 6.104 -1.711 0.752 C6 5CI 31 5CI N6 N6 N 0 1 N N N 18.412 3.219 6.687 6.658 -2.872 0.241 N6 5CI 32 5CI H1 H1 H 0 1 N N N 10.840 10.162 17.374 -7.446 -3.575 0.539 H1 5CI 33 5CI H2 H2 H 0 1 N N N 10.945 10.167 13.482 -4.435 -2.067 -0.988 H2 5CI 34 5CI H3 H3 H 0 1 N N N 10.909 8.599 14.357 -5.669 -0.785 -0.976 H3 5CI 35 5CI H4 H4 H 0 1 N N N 12.323 7.396 14.467 -5.734 -0.190 1.950 H4 5CI 36 5CI H5 H5 H 0 1 N N N 13.685 7.619 13.318 -4.378 0.960 2.035 H5 5CI 37 5CI H6 H6 H 0 1 N N N 14.841 6.600 16.636 -6.996 2.852 0.317 H6 5CI 38 5CI H7 H7 H 0 1 N N N 14.252 9.693 15.419 -2.835 -2.054 0.960 H7 5CI 39 5CI H8 H8 H 0 1 N N N 14.000 8.378 11.966 -1.812 0.477 1.115 H8 5CI 40 5CI H9 H9 H 0 1 N N N 13.582 10.944 10.463 -0.865 1.026 -1.488 H9 5CI 41 5CI H10 H10 H 0 1 N N N 13.144 9.359 9.740 -1.740 2.458 -0.896 H10 5CI 42 5CI H11 H11 H 0 1 N N N 15.977 10.312 10.448 -0.290 2.420 1.168 H11 5CI 43 5CI H12 H12 H 0 1 N N N 14.471 9.827 7.813 0.471 3.136 -1.557 H12 5CI 44 5CI H13 H13 H 0 1 N N N 14.475 12.014 8.605 1.530 4.878 -0.312 H13 5CI 45 5CI H14 H14 H 0 1 N N N 16.565 9.364 6.890 2.384 1.774 -1.627 H14 5CI 46 5CI H15 H15 H 0 1 N N N 18.481 10.212 7.882 3.349 3.938 -1.132 H15 5CI 47 5CI H16 H16 H 0 1 N N N 17.716 8.652 9.474 2.458 1.751 1.446 H16 5CI 48 5CI H17 H17 H 0 1 N N N 20.897 5.603 9.319 6.775 0.651 2.922 H17 5CI 49 5CI H18 H18 H 0 1 N N N 19.206 2.616 6.761 6.182 -3.379 -0.435 H18 5CI 50 5CI H19 H19 H 0 1 N N N 17.600 2.743 7.024 7.522 -3.178 0.559 H19 5CI 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CI N6 C6 SING N N 1 5CI BR8 C8 SING N N 2 5CI N7 C8 DOUB Y N 3 5CI N7 C5 SING Y N 4 5CI C8 N9 SING Y N 5 5CI C6 C5 DOUB Y N 6 5CI C6 N1 SING Y N 7 5CI C5 C4 SING Y N 8 5CI "C2'" "O2'" SING N N 9 5CI "C2'" "C3'" SING N N 10 5CI "C2'" "C1'" SING N N 11 5CI N1 C2 DOUB Y N 12 5CI N9 C4 SING Y N 13 5CI N9 "C1'" SING N N 14 5CI C4 N3 DOUB Y N 15 5CI "O3'" "C3'" SING N N 16 5CI "C3'" "C4'" SING N N 17 5CI C2 N3 SING Y N 18 5CI "C1'" "O4'" SING N N 19 5CI "O4'" "C4'" SING N N 20 5CI "C4'" "C5'" SING N N 21 5CI "C5'" "N5'" SING N N 22 5CI "N5'" C61 SING N N 23 5CI O51 C61 DOUB N N 24 5CI C61 C31 SING N N 25 5CI C31 C21 SING N N 26 5CI C31 C41 SING N N 27 5CI C31 O71 SING N N 28 5CI C21 C11 SING N N 29 5CI C41 C51 SING N N 30 5CI C11 O21 DOUB N N 31 5CI C11 O11 SING N N 32 5CI O31 C51 DOUB N N 33 5CI C51 O41 SING N N 34 5CI O41 H1 SING N N 35 5CI C41 H2 SING N N 36 5CI C41 H3 SING N N 37 5CI C21 H4 SING N N 38 5CI C21 H5 SING N N 39 5CI O11 H6 SING N N 40 5CI O71 H7 SING N N 41 5CI "N5'" H8 SING N N 42 5CI "C5'" H9 SING N N 43 5CI "C5'" H10 SING N N 44 5CI "C4'" H11 SING N N 45 5CI "C3'" H12 SING N N 46 5CI "O3'" H13 SING N N 47 5CI "C2'" H14 SING N N 48 5CI "O2'" H15 SING N N 49 5CI "C1'" H16 SING N N 50 5CI C2 H17 SING N N 51 5CI N6 H18 SING N N 52 5CI N6 H19 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5CI SMILES ACDLabs 12.01 "O=C(O)CC(O)(C(=O)NCC3OC(n2c(Br)nc1c(ncnc12)N)C(O)C3O)CC(=O)O" 5CI InChI InChI 1.03 "InChI=1S/C16H19BrN6O9/c17-15-22-8-11(18)20-4-21-12(8)23(15)13-10(29)9(28)5(32-13)3-19-14(30)16(31,1-6(24)25)2-7(26)27/h4-5,9-10,13,28-29,31H,1-3H2,(H,19,30)(H,24,25)(H,26,27)(H2,18,20,21)/t5-,9-,10-,13-/m1/s1" 5CI InChIKey InChI 1.03 QQTQAKWRRPPHOE-MSTPSEHLSA-N 5CI SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n([C@@H]3O[C@H](CNC(=O)C(O)(CC(O)=O)CC(O)=O)[C@@H](O)[C@H]3O)c(Br)nc12" 5CI SMILES CACTVS 3.370 "Nc1ncnc2n([CH]3O[CH](CNC(=O)C(O)(CC(O)=O)CC(O)=O)[CH](O)[CH]3O)c(Br)nc12" 5CI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(c(n2)Br)[C@H]3[C@@H]([C@@H]([C@H](O3)CNC(=O)C(CC(=O)O)(CC(=O)O)O)O)O)N" 5CI SMILES "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(c(n2)Br)C3C(C(C(O3)CNC(=O)C(CC(=O)O)(CC(=O)O)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5CI "SYSTEMATIC NAME" ACDLabs 12.01 "8-bromo-5'-{[3-carboxy-2-(carboxymethyl)-2-hydroxypropanoyl]amino}-5'-deoxyadenosine" 5CI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[[(2R,3S,4R,5R)-5-(6-azanyl-8-bromanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylcarbamoyl]-3-oxidanyl-pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5CI "Create component" 2012-01-06 RCSB #