data_5D6 # _chem_comp.id 5D6 _chem_comp.name orthoformimycin _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H37 N3 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-09-08 _chem_comp.pdbx_modified_date 2016-09-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.575 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5D6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DM8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5D6 O3 O1 O 0 1 N N N 64.091 116.208 116.604 -3.269 -1.286 -0.999 O3 5D6 1 5D6 O5 O2 O 0 1 N N N 61.558 120.004 111.898 2.421 -2.880 0.432 O5 5D6 2 5D6 C9 C1 C 0 1 N N N 60.865 119.162 112.462 2.235 -1.684 0.304 C9 5D6 3 5D6 C10 C2 C 0 1 N N N 59.377 119.341 112.433 3.369 -0.787 0.088 C10 5D6 4 5D6 C20 C3 C 0 1 N N N 58.936 120.498 111.579 3.139 0.694 -0.071 C20 5D6 5 5D6 C11 C4 C 0 1 N N N 58.609 118.467 113.005 4.623 -1.286 0.030 C11 5D6 6 5D6 C12 C5 C 0 1 Y N N 57.205 118.165 112.860 5.774 -0.375 -0.021 C12 5D6 7 5D6 C17 C6 C 0 1 Y N N 56.803 116.859 112.464 6.863 -0.664 -0.853 C17 5D6 8 5D6 C16 C7 C 0 1 Y N N 55.577 116.480 112.335 7.935 0.189 -0.898 C16 5D6 9 5D6 C15 C8 C 0 1 Y N N 54.465 117.338 112.603 7.943 1.342 -0.116 C15 5D6 10 5D6 N2 N1 N 0 1 N N N 53.202 116.907 112.596 9.034 2.204 -0.164 N2 5D6 11 5D6 C19 C9 C 0 1 N N N 52.770 115.979 111.566 9.045 3.417 0.657 C19 5D6 12 5D6 C18 C10 C 0 1 N N N 52.171 117.798 113.101 10.171 1.900 -1.036 C18 5D6 13 5D6 C14 C11 C 0 1 Y N N 54.860 118.651 112.979 6.863 1.633 0.713 C14 5D6 14 5D6 C13 C12 C 0 1 Y N N 56.096 119.048 113.087 5.784 0.789 0.759 C13 5D6 15 5D6 N1 N2 N 0 1 N N N 61.364 118.097 113.107 0.984 -1.186 0.362 N1 5D6 16 5D6 C8 C13 C 0 1 N N S 62.764 117.933 113.474 -0.153 -2.085 0.579 C8 5D6 17 5D6 C21 C14 C 0 1 N N S 63.063 116.466 113.783 -0.608 -2.672 -0.761 C21 5D6 18 5D6 O6 O3 O 0 1 N N N 62.772 115.646 112.660 0.436 -3.475 -1.316 O6 5D6 19 5D6 C22 C15 C 0 1 N N R 62.261 116.008 114.990 -0.925 -1.514 -1.707 C22 5D6 20 5D6 O7 O4 O 0 1 N N N 62.260 114.584 115.077 -1.362 -2.042 -2.961 O7 5D6 21 5D6 C3 C16 C 0 1 N N R 62.783 116.686 116.249 -2.004 -0.619 -1.147 C3 5D6 22 5D6 C5 C17 C 0 1 N N R 63.294 118.768 114.748 -1.315 -1.304 1.187 C5 5D6 23 5D6 N N3 N 0 1 N N N 63.145 120.237 114.769 -0.914 -0.785 2.501 N 5D6 24 5D6 C7 C18 C 0 1 N N N 61.793 120.701 114.926 -2.006 -0.025 3.123 C7 5D6 25 5D6 C6 C19 C 0 1 N N N 64.037 120.937 115.692 -0.462 -1.872 3.380 C6 5D6 26 5D6 C4 C20 C 0 1 N N S 62.952 118.199 116.122 -1.716 -0.133 0.286 C4 5D6 27 5D6 O4 O5 O 0 1 N N N 64.115 118.465 116.908 -3.039 0.281 0.723 O4 5D6 28 5D6 C2 C21 C 0 1 N N R 64.917 117.363 116.673 -3.987 -0.461 -0.059 C2 5D6 29 5D6 O2 O6 O 0 1 N N N 65.598 117.267 117.863 -4.838 0.444 -0.766 O2 5D6 30 5D6 C1 C22 C 0 1 N N S 66.913 117.785 117.837 -5.883 1.003 0.032 C1 5D6 31 5D6 C C23 C 0 1 N N N 67.771 116.722 117.156 -7.068 0.073 0.032 C 5D6 32 5D6 O1 O7 O 0 1 N N N 68.863 117.018 116.689 -7.023 -0.962 -0.589 O1 5D6 33 5D6 O O8 O 0 1 N N N 67.222 115.502 117.086 -8.174 0.396 0.720 O 5D6 34 5D6 C23 C24 C 0 1 N N S 67.140 117.904 119.339 -6.297 2.358 -0.546 C23 5D6 35 5D6 O8 O9 O 0 1 N N N 68.258 117.113 119.758 -7.341 2.918 0.252 O8 5D6 36 5D6 C24 C25 C 0 1 N N N 67.301 119.364 119.799 -5.093 3.302 -0.546 C24 5D6 37 5D6 O9 O10 O 0 1 N N N 67.402 119.449 121.223 -5.448 4.527 -1.192 O9 5D6 38 5D6 H1 H1 H 0 1 N N N 57.839 120.573 111.601 3.236 1.182 0.899 H1 5D6 39 5D6 H2 H2 H 0 1 N N N 59.375 121.429 111.968 3.878 1.105 -0.759 H2 5D6 40 5D6 H3 H3 H 0 1 N N N 59.272 120.338 110.544 2.138 0.866 -0.466 H3 5D6 41 5D6 H4 H4 H 0 1 N N N 59.117 117.846 113.728 4.779 -2.354 0.021 H4 5D6 42 5D6 H5 H5 H 0 1 N N N 57.578 116.135 112.257 6.857 -1.558 -1.459 H5 5D6 43 5D6 H6 H6 H 0 1 N N N 55.381 115.469 112.010 8.775 -0.034 -1.539 H6 5D6 44 5D6 H7 H7 H 0 1 N N N 51.708 115.734 111.715 9.493 3.197 1.625 H7 5D6 45 5D6 H8 H8 H 0 1 N N N 52.905 116.441 110.577 9.626 4.191 0.155 H8 5D6 46 5D6 H9 H9 H 0 1 N N N 53.370 115.059 111.626 8.022 3.767 0.802 H9 5D6 47 5D6 H10 H10 H 0 1 N N N 52.599 118.456 113.872 9.832 1.846 -2.070 H10 5D6 48 5D6 H11 H11 H 0 1 N N N 51.778 118.409 112.275 10.922 2.683 -0.940 H11 5D6 49 5D6 H12 H12 H 0 1 N N N 51.355 117.204 113.538 10.605 0.943 -0.746 H12 5D6 50 5D6 H13 H13 H 0 1 N N N 54.081 119.369 113.190 6.873 2.528 1.317 H13 5D6 51 5D6 H14 H14 H 0 1 N N N 56.293 120.075 113.356 4.945 1.018 1.399 H14 5D6 52 5D6 H15 H15 H 0 1 N N N 60.730 117.364 113.353 0.836 -0.233 0.260 H15 5D6 53 5D6 H16 H16 H 0 1 N N N 63.389 118.229 112.618 0.141 -2.891 1.251 H16 5D6 54 5D6 H17 H17 H 0 1 N N N 64.131 116.382 114.030 -1.501 -3.280 -0.612 H17 5D6 55 5D6 H18 H18 H 0 1 N N N 62.964 114.740 112.871 0.213 -3.877 -2.166 H18 5D6 56 5D6 H19 H19 H 0 1 N N N 61.225 116.348 114.842 -0.021 -0.925 -1.865 H19 5D6 57 5D6 H20 H20 H 0 1 N N N 61.756 114.313 115.835 -0.708 -2.603 -3.401 H20 5D6 58 5D6 H21 H21 H 0 1 N N N 62.080 116.483 117.071 -2.127 0.248 -1.795 H21 5D6 59 5D6 H22 H22 H 0 1 N N N 64.383 118.623 114.685 -2.169 -1.970 1.309 H22 5D6 60 5D6 H24 H24 H 0 1 N N N 61.780 121.801 114.930 -2.873 -0.674 3.253 H24 5D6 61 5D6 H25 H25 H 0 1 N N N 61.179 120.331 114.092 -1.683 0.347 4.095 H25 5D6 62 5D6 H26 H26 H 0 1 N N N 61.385 120.326 115.876 -2.274 0.815 2.483 H26 5D6 63 5D6 H27 H27 H 0 1 N N N 63.850 122.019 115.634 0.393 -2.375 2.927 H27 5D6 64 5D6 H28 H28 H 0 1 N N N 63.850 120.587 116.718 -0.171 -1.461 4.347 H28 5D6 65 5D6 H29 H29 H 0 1 N N N 65.082 120.731 115.419 -1.273 -2.588 3.519 H29 5D6 66 5D6 H30 H30 H 0 1 N N N 62.068 118.710 116.530 -0.985 0.675 0.310 H30 5D6 67 5D6 H31 H31 H 0 1 N N N 65.572 117.474 115.796 -4.589 -1.090 0.596 H31 5D6 68 5D6 H32 H32 H 0 1 N N N 66.993 118.759 117.333 -5.527 1.138 1.054 H32 5D6 69 5D6 H33 H33 H 0 1 N N N 67.809 114.916 116.623 -8.909 -0.232 0.690 H33 5D6 70 5D6 H34 H34 H 0 1 N N N 66.239 117.512 119.833 -6.652 2.223 -1.568 H34 5D6 71 5D6 H35 H35 H 0 1 N N N 68.378 117.205 120.696 -7.095 3.065 1.175 H35 5D6 72 5D6 H36 H36 H 0 1 N N N 68.213 119.784 119.349 -4.792 3.507 0.481 H36 5D6 73 5D6 H37 H37 H 0 1 N N N 66.427 119.944 119.466 -4.265 2.836 -1.081 H37 5D6 74 5D6 H38 H38 H 0 1 N N N 67.500 120.358 121.480 -4.731 5.174 -1.228 H38 5D6 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5D6 C19 N2 SING N N 1 5D6 C20 C10 SING N N 2 5D6 O5 C9 DOUB N N 3 5D6 C16 C17 DOUB Y N 4 5D6 C16 C15 SING Y N 5 5D6 C10 C9 SING N N 6 5D6 C10 C11 DOUB N E 7 5D6 C9 N1 SING N N 8 5D6 C17 C12 SING Y N 9 5D6 N2 C15 SING N N 10 5D6 N2 C18 SING N N 11 5D6 C15 C14 DOUB Y N 12 5D6 O6 C21 SING N N 13 5D6 C12 C11 SING N N 14 5D6 C12 C13 DOUB Y N 15 5D6 C14 C13 SING Y N 16 5D6 N1 C8 SING N N 17 5D6 C8 C21 SING N N 18 5D6 C8 C5 SING N N 19 5D6 C21 C22 SING N N 20 5D6 C5 N SING N N 21 5D6 C5 C4 SING N N 22 5D6 N C7 SING N N 23 5D6 N C6 SING N N 24 5D6 C22 O7 SING N N 25 5D6 C22 C3 SING N N 26 5D6 C4 C3 SING N N 27 5D6 C4 O4 SING N N 28 5D6 C3 O3 SING N N 29 5D6 O3 C2 SING N N 30 5D6 C2 O4 SING N N 31 5D6 C2 O2 SING N N 32 5D6 O1 C DOUB N N 33 5D6 O C SING N N 34 5D6 C C1 SING N N 35 5D6 C1 O2 SING N N 36 5D6 C1 C23 SING N N 37 5D6 C23 O8 SING N N 38 5D6 C23 C24 SING N N 39 5D6 C24 O9 SING N N 40 5D6 C20 H1 SING N N 41 5D6 C20 H2 SING N N 42 5D6 C20 H3 SING N N 43 5D6 C11 H4 SING N N 44 5D6 C17 H5 SING N N 45 5D6 C16 H6 SING N N 46 5D6 C19 H7 SING N N 47 5D6 C19 H8 SING N N 48 5D6 C19 H9 SING N N 49 5D6 C18 H10 SING N N 50 5D6 C18 H11 SING N N 51 5D6 C18 H12 SING N N 52 5D6 C14 H13 SING N N 53 5D6 C13 H14 SING N N 54 5D6 N1 H15 SING N N 55 5D6 C8 H16 SING N N 56 5D6 C21 H17 SING N N 57 5D6 O6 H18 SING N N 58 5D6 C22 H19 SING N N 59 5D6 O7 H20 SING N N 60 5D6 C3 H21 SING N N 61 5D6 C5 H22 SING N N 62 5D6 C7 H24 SING N N 63 5D6 C7 H25 SING N N 64 5D6 C7 H26 SING N N 65 5D6 C6 H27 SING N N 66 5D6 C6 H28 SING N N 67 5D6 C6 H29 SING N N 68 5D6 C4 H30 SING N N 69 5D6 C2 H31 SING N N 70 5D6 C1 H32 SING N N 71 5D6 O H33 SING N N 72 5D6 C23 H34 SING N N 73 5D6 O8 H35 SING N N 74 5D6 C24 H36 SING N N 75 5D6 C24 H37 SING N N 76 5D6 O9 H38 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5D6 SMILES ACDLabs 12.01 "O1C(OC3C1C(C(C(NC(=O)C(=[C@H]c2ccc(cc2)N(C)C)C)C3N(C)C)O)O)OC(C(O)CO)C(=O)O" 5D6 InChI InChI 1.03 "InChI=1S/C25H37N3O10/c1-12(10-13-6-8-14(9-7-13)27(2)3)23(33)26-16-17(28(4)5)21-22(19(32)18(16)31)38-25(37-21)36-20(24(34)35)15(30)11-29/h6-10,15-22,25,29-32H,11H2,1-5H3,(H,26,33)(H,34,35)/b12-10+/t15-,16-,17+,18-,19+,20-,21-,22+,25+/m0/s1" 5D6 InChIKey InChI 1.03 LPVLOXICDYAAJH-LWTHLLSHSA-N 5D6 SMILES_CANONICAL CACTVS 3.385 "CN(C)[C@@H]1[C@H](NC(=O)\C(C)=C\c2ccc(cc2)N(C)C)[C@H](O)[C@@H](O)[C@H]3O[C@@H](O[C@@H]13)O[C@@H]([C@@H](O)CO)C(O)=O" 5D6 SMILES CACTVS 3.385 "CN(C)[CH]1[CH](NC(=O)C(C)=Cc2ccc(cc2)N(C)C)[CH](O)[CH](O)[CH]3O[CH](O[CH]13)O[CH]([CH](O)CO)C(O)=O" 5D6 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C/C(=C\c1ccc(cc1)N(C)C)/C(=O)N[C@H]2[C@H]([C@H]3[C@@H]([C@@H]([C@H]2O)O)O[C@@H](O3)O[C@@H]([C@H](CO)O)C(=O)O)N(C)C" 5D6 SMILES "OpenEye OEToolkits" 1.9.2 "CC(=Cc1ccc(cc1)N(C)C)C(=O)NC2C(C3C(C(C2O)O)OC(O3)OC(C(CO)O)C(=O)O)N(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5D6 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3S)-2-{[(2R,3aS,4R,5S,6S,7R,7aR)-4-(dimethylamino)-5-({(2E)-3-[4-(dimethylamino)phenyl]-2-methylprop-2-enoyl}amino)-6,7-dihydroxyhexahydro-1,3-benzodioxol-2-yl]oxy}-3,4-dihydroxybutanoic acid" 5D6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S,3S)-2-[[(2R,3aS,4R,5S,6S,7R,7aR)-4-(dimethylamino)-5-[[(E)-3-[4-(dimethylamino)phenyl]-2-methyl-prop-2-enoyl]amino]-6,7-bis(oxidanyl)-3a,4,5,6,7,7a-hexahydro-1,3-benzodioxol-2-yl]oxy]-3,4-bis(oxidanyl)butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5D6 "Create component" 2015-09-08 EBI 5D6 "Initial release" 2016-10-05 RCSB #