data_5DM # _chem_comp.id 5DM _chem_comp.name "N-[(2S)-2-amino-3-phenylpropyl]-D-methionine" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H22 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-02-17 _chem_comp.pdbx_modified_date 2013-05-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 282.402 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5DM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1E5O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5DM O O O 0 1 N N N 37.708 -12.110 4.498 1.496 -3.073 -0.558 O 5DM 1 5DM C1 C1 C 0 1 N N N 37.064 -11.553 5.390 2.363 -2.521 0.079 C1 5DM 2 5DM N1 N1 N 0 1 N N N 35.470 -9.701 5.674 0.988 -0.531 -0.157 N1 5DM 3 5DM SD SD S 0 1 N N N 34.537 -14.553 4.571 4.774 2.066 -0.473 SD 5DM 4 5DM CE CE C 0 1 N N N 35.102 -14.887 6.218 4.536 3.754 0.146 CE 5DM 5 5DM CA1 CA1 C 0 1 N N R 35.653 -11.041 5.122 2.240 -1.055 0.405 CA1 5DM 6 5DM CB1 CB1 C 0 1 N N N 34.632 -12.010 5.722 3.426 -0.298 -0.196 CB1 5DM 7 5DM CG1 CG1 C 0 1 N N N 33.910 -12.870 4.704 3.369 1.168 0.240 CG1 5DM 8 5DM C C C 0 1 N N N 34.928 -8.800 4.676 -0.138 -0.764 0.757 C 5DM 9 5DM N N N 0 1 N N N 35.585 -8.558 2.305 -1.617 -0.792 -1.194 N 5DM 10 5DM CA CA C 0 1 N N S 36.013 -8.393 3.683 -1.421 -0.206 0.139 CA 5DM 11 5DM CB CB C 0 1 N N N 37.084 -7.334 3.833 -2.612 -0.558 1.031 CB 5DM 12 5DM CG CG C 0 1 Y N N 37.454 -6.614 2.570 -3.857 0.095 0.488 CG 5DM 13 5DM CZ CZ C 0 1 Y N N 38.171 -5.250 0.250 -6.141 1.292 -0.508 CZ 5DM 14 5DM CD1 CD1 C 0 1 Y N N 37.019 -5.318 2.347 -4.644 -0.574 -0.431 CD1 5DM 15 5DM CD2 CD2 C 0 1 Y N N 38.260 -7.212 1.617 -4.216 1.360 0.914 CD2 5DM 16 5DM CE1 CE1 C 0 1 Y N N 37.367 -4.639 1.196 -5.786 0.025 -0.929 CE1 5DM 17 5DM CE2 CE2 C 0 1 Y N N 38.615 -6.543 0.461 -5.358 1.959 0.415 CE2 5DM 18 5DM HN1 HN1 H 0 1 N N N 34.839 -9.749 6.449 1.075 0.449 -0.381 HN1 5DM 19 5DM HE HE H 0 1 N N N 35.515 -15.905 6.265 3.576 4.136 -0.200 HE 5DM 20 5DM HEA HEA H 0 1 N N N 35.883 -14.162 6.492 4.553 3.747 1.236 HEA 5DM 21 5DM HEB HEB H 0 1 N N N 34.259 -14.801 6.919 5.337 4.394 -0.225 HEB 5DM 22 5DM HA1 HA1 H 0 1 N N N 35.498 -11.007 4.033 2.236 -0.923 1.487 HA1 5DM 23 5DM HB1 HB1 H 0 1 N N N 35.159 -12.675 6.422 4.357 -0.744 0.153 HB1 5DM 24 5DM HB1A HB1A H 0 0 N N N 33.881 -11.422 6.270 3.380 -0.355 -1.283 HB1A 5DM 25 5DM HG1 HG1 H 0 1 N N N 34.004 -12.389 3.719 3.415 1.226 1.327 HG1 5DM 26 5DM HG1A HG1A H 0 0 N N N 32.848 -12.920 4.987 2.438 1.615 -0.109 HG1A 5DM 27 5DM H H H 0 1 N N N 34.113 -9.305 4.136 -0.252 -1.835 0.927 H 5DM 28 5DM HA HA H 0 1 N N N 34.536 -7.901 5.174 0.055 -0.264 1.707 HA 5DM 29 5DM HN HN H 0 1 N N N 36.324 -8.281 1.691 -1.695 -1.796 -1.139 HN 5DM 30 5DM HNA HNA H 0 1 N N N 35.356 -9.517 2.140 -2.423 -0.391 -1.650 HNA 5DM 31 5DM HAA HAA H 0 1 N N N 36.652 -9.284 3.769 -1.340 0.877 0.051 HAA 5DM 32 5DM HB HB H 0 1 N N N 36.725 -6.588 4.557 -2.747 -1.640 1.048 HB 5DM 33 5DM HBA HBA H 0 1 N N N 37.990 -7.820 4.225 -2.427 -0.200 2.044 HBA 5DM 34 5DM HZ HZ H 0 1 N N N 38.450 -4.720 -0.649 -7.034 1.760 -0.897 HZ 5DM 35 5DM HD1 HD1 H 0 1 N N N 36.398 -4.831 3.085 -4.366 -1.565 -0.760 HD1 5DM 36 5DM HD2 HD2 H 0 1 N N N 38.617 -8.218 1.779 -3.604 1.881 1.635 HD2 5DM 37 5DM HE1 HE1 H 0 1 N N N 37.012 -3.632 1.034 -6.398 -0.496 -1.650 HE1 5DM 38 5DM HE2 HE2 H 0 1 N N N 39.238 -7.029 -0.276 -5.635 2.950 0.744 HE2 5DM 39 5DM OXT OXT O 0 1 N Y N ? ? ? 3.432 -3.215 0.499 OXT 5DM 40 5DM HXT HXT H 0 1 N Y N ? ? ? 3.464 -4.154 0.268 HXT 5DM 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5DM O C1 DOUB N N 1 5DM C1 CA1 SING N N 2 5DM N1 CA1 SING N N 3 5DM N1 C SING N N 4 5DM N1 HN1 SING N N 5 5DM SD CE SING N N 6 5DM SD CG1 SING N N 7 5DM CE HE SING N N 8 5DM CE HEA SING N N 9 5DM CE HEB SING N N 10 5DM CA1 CB1 SING N N 11 5DM CA1 HA1 SING N N 12 5DM CB1 CG1 SING N N 13 5DM CB1 HB1 SING N N 14 5DM CB1 HB1A SING N N 15 5DM CG1 HG1 SING N N 16 5DM CG1 HG1A SING N N 17 5DM C CA SING N N 18 5DM C H SING N N 19 5DM C HA SING N N 20 5DM N CA SING N N 21 5DM N HN SING N N 22 5DM N HNA SING N N 23 5DM CA CB SING N N 24 5DM CA HAA SING N N 25 5DM CB CG SING N N 26 5DM CB HB SING N N 27 5DM CB HBA SING N N 28 5DM CG CD1 DOUB Y N 29 5DM CG CD2 SING Y N 30 5DM CZ CE1 DOUB Y N 31 5DM CZ CE2 SING Y N 32 5DM CZ HZ SING N N 33 5DM CD1 CE1 SING Y N 34 5DM CD1 HD1 SING N N 35 5DM CD2 CE2 DOUB Y N 36 5DM CD2 HD2 SING N N 37 5DM CE1 HE1 SING N N 38 5DM CE2 HE2 SING N N 39 5DM C1 OXT SING N N 40 5DM OXT HXT SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5DM SMILES ACDLabs 12.01 "O=C(O)C(NCC(N)Cc1ccccc1)CCSC" 5DM InChI InChI 1.03 "InChI=1S/C14H22N2O2S/c1-19-8-7-13(14(17)18)16-10-12(15)9-11-5-3-2-4-6-11/h2-6,12-13,16H,7-10,15H2,1H3,(H,17,18)/t12-,13+/m0/s1" 5DM InChIKey InChI 1.03 NHMOMUGXIBIDTK-QWHCGFSZSA-N 5DM SMILES_CANONICAL CACTVS 3.370 "CSCC[C@@H](NC[C@@H](N)Cc1ccccc1)C(O)=O" 5DM SMILES CACTVS 3.370 "CSCC[CH](NC[CH](N)Cc1ccccc1)C(O)=O" 5DM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CSCC[C@H](C(=O)O)NC[C@H](Cc1ccccc1)N" 5DM SMILES "OpenEye OEToolkits" 1.7.6 "CSCCC(C(=O)O)NCC(Cc1ccccc1)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5DM "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S)-2-amino-3-phenylpropyl]-D-methionine" 5DM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-[[(2S)-2-azanyl-3-phenyl-propyl]amino]-4-methylsulfanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5DM "Create component" 2011-02-17 RCSB 5DM "Modify aromatic_flag" 2011-06-04 RCSB 5DM "Modify descriptor" 2011-06-04 RCSB 5DM "Other modification" 2013-05-23 RCSB #