data_5FD # _chem_comp.id 5FD _chem_comp.name "5'-FLUORO-5'-DEOXYADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 F N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-12-16 _chem_comp.pdbx_modified_date 2022-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 269.232 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5FD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RQR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5FD "O2'" "O2'" O 0 1 N Y N 16.916 28.183 63.306 -0.835 2.369 -0.732 "O2'" 5FD 1 5FD "C2'" "C2'" C 0 1 N N R 17.104 29.609 63.373 -1.363 1.042 -0.786 "C2'" 5FD 2 5FD "C3'" "C3'" C 0 1 N N S 17.208 30.069 64.832 -2.895 1.048 -0.567 "C3'" 5FD 3 5FD "O3'" "O3'" O 0 1 N N N 17.396 28.938 65.704 -3.303 2.254 0.082 "O3'" 5FD 4 5FD "C4'" "C4'" C 0 1 N N S 15.826 30.690 65.063 -3.151 -0.168 0.345 "C4'" 5FD 5 5FD "C5'" "C5'" C 0 1 N N N 15.812 31.813 66.044 -4.117 -1.137 -0.340 "C5'" 5FD 6 5FD F19 F19 F 0 1 N N N 15.919 31.338 67.310 -4.432 -2.180 0.539 F19 5FD 7 5FD "O4'" "O4'" O 0 1 N N N 15.555 31.316 63.825 -1.885 -0.812 0.563 "O4'" 5FD 8 5FD "C1'" "C1'" C 0 1 N N R 15.840 30.342 62.869 -0.866 0.200 0.417 "C1'" 5FD 9 5FD N9 N9 N 0 1 Y N N 16.116 31.051 61.656 0.431 -0.412 0.117 N9 5FD 10 5FD C8 C8 C 0 1 Y N N 17.149 31.877 61.425 0.636 -1.669 -0.367 C8 5FD 11 5FD N7 N7 N 0 1 Y N N 17.099 32.351 60.184 1.911 -1.885 -0.516 N7 5FD 12 5FD C5 C5 C 0 1 Y N N 16.026 31.797 59.632 2.602 -0.783 -0.139 C5 5FD 13 5FD C4 C4 C 0 1 Y N N 15.388 30.977 60.565 1.661 0.177 0.267 C4 5FD 14 5FD N3 N3 N 0 1 Y N N 14.266 30.284 60.284 2.088 1.365 0.683 N3 5FD 15 5FD C2 C2 C 0 1 Y N N 13.706 30.368 59.092 3.374 1.643 0.714 C2 5FD 16 5FD N1 N1 N 0 1 Y N N 14.294 31.181 58.119 4.296 0.774 0.339 N1 5FD 17 5FD C6 C6 C 0 1 Y N N 15.480 31.910 58.379 3.964 -0.441 -0.084 C6 5FD 18 5FD N6 N6 N 0 1 N N N 16.068 32.685 57.469 4.937 -1.344 -0.475 N6 5FD 19 5FD HO2 HO2 H 0 1 N N N 16.853 27.914 62.397 -1.187 2.960 -1.412 HO2 5FD 20 5FD "H2'" "H2'" H 0 1 N N N 17.987 29.934 62.803 -1.107 0.562 -1.730 "H2'" 5FD 21 5FD "H3''" "H3''" H 0 0 N N N 18.001 30.822 64.950 -3.417 0.932 -1.516 "H3''" 5FD 22 5FD HO3 HO3 H 0 1 N N N 17.459 29.238 66.603 -4.255 2.311 0.245 HO3 5FD 23 5FD "H4'" "H4'" H 0 1 N N N 15.086 29.918 65.322 -3.570 0.163 1.295 "H4'" 5FD 24 5FD "H5'1" "H5'1" H 0 0 N N N 16.657 32.485 65.837 -5.028 -0.608 -0.617 "H5'1" 5FD 25 5FD "H5'2" "H5'2" H 0 0 N N N 14.868 32.369 65.944 -3.648 -1.546 -1.235 "H5'2" 5FD 26 5FD "H1'" "H1'" H 0 1 N N N 15.014 29.626 62.743 -0.803 0.814 1.316 "H1'" 5FD 27 5FD HC8 HC8 H 0 1 N N N 17.914 32.122 62.147 -0.143 -2.382 -0.592 HC8 5FD 28 5FD HC2 HC2 H 0 1 N N N 12.805 29.815 58.871 3.688 2.618 1.057 HC2 5FD 29 5FD HN2 HN2 H 0 1 N N N 15.544 32.656 56.618 5.874 -1.097 -0.433 HN2 5FD 30 5FD H1 H1 H 0 1 N N N 16.105 33.626 57.806 4.682 -2.225 -0.792 H1 5FD 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5FD "O2'" "C2'" SING N N 1 5FD "O2'" HO2 SING N N 2 5FD "C2'" "C3'" SING N N 3 5FD "C2'" "C1'" SING N N 4 5FD "C2'" "H2'" SING N N 5 5FD "C3'" "O3'" SING N N 6 5FD "C3'" "C4'" SING N N 7 5FD "C3'" "H3''" SING N N 8 5FD "O3'" HO3 SING N N 9 5FD "C4'" "C5'" SING N N 10 5FD "C4'" "O4'" SING N N 11 5FD "C4'" "H4'" SING N N 12 5FD "C5'" F19 SING N N 13 5FD "C5'" "H5'1" SING N N 14 5FD "C5'" "H5'2" SING N N 15 5FD "O4'" "C1'" SING N N 16 5FD "C1'" N9 SING N N 17 5FD "C1'" "H1'" SING N N 18 5FD N9 C8 SING Y N 19 5FD N9 C4 SING Y N 20 5FD C8 N7 DOUB Y N 21 5FD C8 HC8 SING N N 22 5FD N7 C5 SING Y N 23 5FD C5 C4 DOUB Y N 24 5FD C5 C6 SING Y N 25 5FD C4 N3 SING Y N 26 5FD N3 C2 DOUB Y N 27 5FD C2 N1 SING Y N 28 5FD C2 HC2 SING N N 29 5FD N1 C6 DOUB Y N 30 5FD C6 N6 SING N N 31 5FD HN2 N6 SING N N 32 5FD N6 H1 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5FD SMILES ACDLabs 12.01 "Nc1ncnc2c1ncn2C1OC(CF)C(O)C1O" 5FD InChI InChI 1.03 "InChI=1S/C10H12FN5O3/c11-1-4-6(17)7(18)10(19-4)16-3-15-5-8(12)13-2-14-9(5)16/h2-4,6-7,10,17-18H,1H2,(H2,12,13,14)/t4-,6-,7-,10-/m1/s1" 5FD InChIKey InChI 1.03 QPVLKMICBYRPSX-KQYNXXCUSA-N 5FD SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CF)[C@@H](O)[C@H]3O" 5FD SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CF)[CH](O)[CH]3O" 5FD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CF)O)O)N" 5FD SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CF)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5FD "SYSTEMATIC NAME" ACDLabs 12.01 "5'-deoxy-5'-fluoroadenosine" 5FD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-(fluoranylmethyl)oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5FD "Create component" 2003-12-16 RCSB 5FD "Modify descriptor" 2011-06-04 RCSB 5FD "Other modification" 2022-06-06 RCSB ##