data_5FI
#
_chem_comp.id 5FI
_chem_comp.name "2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H21 F3 N6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-06-17
_chem_comp.pdbx_modified_date 2013-07-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 390.405
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5FI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4L46
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5FI C4 C4 C 0 1 Y N N 47.917 -17.056 12.692 4.647 -0.634 0.292 C4 5FI 1
5FI C5 C5 C 0 1 Y N N 47.452 -16.232 11.642 5.677 -1.010 -0.573 C5 5FI 2
5FI C6 C6 C 0 1 Y N N 46.871 -15.003 11.934 6.672 -1.836 -0.088 C6 5FI 3
5FI N1 N1 N 0 1 Y N N 46.753 -14.601 13.198 6.617 -2.242 1.173 N1 5FI 4
5FI N3 N3 N 0 1 Y N N 47.766 -16.569 13.958 4.662 -1.082 1.543 N3 5FI 5
5FI FAB FAB F 0 1 N N N 54.749 -21.516 5.588 -5.902 -2.632 0.108 FAB 5FI 6
5FI CBB CBB C 0 1 N N N 55.635 -21.601 6.566 -6.174 -1.348 -0.376 CBB 5FI 7
5FI FAC FAC F 0 1 N N N 56.382 -20.521 6.616 -6.224 -1.378 -1.774 FAC 5FI 8
5FI FAD FAD F 0 1 N N N 56.521 -22.594 6.328 -7.405 -0.911 0.125 FAD 5FI 9
5FI CAU CAU C 0 1 Y N N 54.861 -21.670 7.864 -5.087 -0.403 0.068 CAU 5FI 10
5FI CAE CAE C 0 1 Y N N 55.588 -21.539 9.027 -5.213 0.270 1.275 CAE 5FI 11
5FI CAF CAF C 0 1 Y N N 54.951 -21.597 10.261 -4.228 1.138 1.697 CAF 5FI 12
5FI CAI CAI C 0 1 Y N N 53.478 -21.838 7.926 -3.986 -0.221 -0.720 CAI 5FI 13
5FI CAX CAX C 0 1 Y N N 52.836 -21.904 9.159 -2.976 0.654 -0.313 CAX 5FI 14
5FI CAY CAY C 0 1 Y N N 53.571 -21.763 10.313 -3.105 1.339 0.907 CAY 5FI 15
5FI NAS NAS N 0 1 Y N N 52.737 -21.826 11.354 -1.969 2.115 1.030 NAS 5FI 16
5FI NAR NAR N 0 1 Y N N 51.560 -22.074 9.548 -1.793 1.038 -0.859 NAR 5FI 17
5FI CAV CAV C 0 1 Y N N 51.497 -22.029 10.892 -1.208 1.897 -0.076 CAV 5FI 18
5FI CAO CAO C 0 1 N N N 50.281 -22.148 11.786 0.124 2.546 -0.349 CAO 5FI 19
5FI NAZ NAZ N 0 1 N N N 49.832 -20.754 12.027 1.203 1.664 0.114 NAZ 5FI 20
5FI CAL CAL C 0 1 N N N 50.092 -20.124 13.348 2.499 2.357 0.084 CAL 5FI 21
5FI CAN CAN C 0 1 N N N 49.788 -18.632 13.281 3.581 1.434 0.648 CAN 5FI 22
5FI CAK CAK C 0 1 N N N 48.390 -20.714 11.879 1.251 0.429 -0.679 CAK 5FI 23
5FI CAM CAM C 0 1 N N N 48.040 -19.250 11.535 2.334 -0.495 -0.115 CAM 5FI 24
5FI NBA NBA N 0 1 N N N 48.568 -18.318 12.520 3.629 0.198 -0.146 NBA 5FI 25
5FI CAJ CAJ C 0 1 N N N 47.512 -16.591 10.195 5.703 -0.527 -2.000 CAJ 5FI 26
5FI CAA CAA C 0 1 N N N 48.842 -16.289 9.560 6.378 0.845 -2.063 CAA 5FI 27
5FI C2 C2 C 0 1 Y N N 47.190 -15.379 14.194 5.632 -1.869 1.964 C2 5FI 28
5FI H1 H1 H 0 1 N N N 46.514 -14.372 11.133 7.484 -2.148 -0.728 H1 5FI 29
5FI H2 H2 H 0 1 N N N 56.657 -21.391 8.980 -6.088 0.112 1.889 H2 5FI 30
5FI H3 H3 H 0 1 N N N 55.523 -21.514 11.173 -4.331 1.659 2.637 H3 5FI 31
5FI H4 H4 H 0 1 N N N 52.904 -21.917 7.015 -3.897 -0.753 -1.656 H4 5FI 32
5FI H7 H7 H 0 1 N N N 49.490 -22.726 11.285 0.231 2.719 -1.420 H7 5FI 33
5FI H8 H8 H 0 1 N N N 50.547 -22.636 12.735 0.179 3.498 0.179 H8 5FI 34
5FI H10 H10 H 0 1 N N N 49.450 -20.593 14.108 2.746 2.622 -0.944 H10 5FI 35
5FI H11 H11 H 0 1 N N N 51.148 -20.269 13.620 2.442 3.262 0.689 H11 5FI 36
5FI H12 H12 H 0 1 N N N 50.638 -18.124 12.802 4.548 1.935 0.600 H12 5FI 37
5FI H13 H13 H 0 1 N N N 49.666 -18.255 14.307 3.349 1.191 1.685 H13 5FI 38
5FI H14 H14 H 0 1 N N N 47.901 -21.014 12.817 0.284 -0.072 -0.631 H14 5FI 39
5FI H15 H15 H 0 1 N N N 48.070 -21.385 11.068 1.484 0.671 -1.716 H15 5FI 40
5FI H16 H16 H 0 1 N N N 48.465 -19.005 10.550 2.087 -0.759 0.913 H16 5FI 41
5FI H17 H17 H 0 1 N N N 46.946 -19.146 11.498 2.391 -1.400 -0.720 H17 5FI 42
5FI H18 H18 H 0 1 N N N 46.734 -16.024 9.662 6.260 -1.235 -2.614 H18 5FI 43
5FI H19 H19 H 0 1 N N N 47.314 -17.668 10.094 4.682 -0.447 -2.375 H19 5FI 44
5FI H20 H20 H 0 1 N N N 48.816 -16.577 8.499 6.332 1.226 -3.083 H20 5FI 45
5FI H21 H21 H 0 1 N N N 49.052 -15.212 9.643 5.862 1.534 -1.394 H21 5FI 46
5FI H22 H22 H 0 1 N N N 49.631 -16.857 10.075 7.419 0.751 -1.756 H22 5FI 47
5FI H23 H23 H 0 1 N N N 47.077 -15.042 15.214 5.618 -2.219 2.986 H23 5FI 48
5FI H5 H5 H 0 1 N N N 52.995 -21.737 12.316 -1.754 2.706 1.768 H5 5FI 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5FI FAB CBB SING N N 1
5FI FAD CBB SING N N 2
5FI CBB FAC SING N N 3
5FI CBB CAU SING N N 4
5FI CAU CAI DOUB Y N 5
5FI CAU CAE SING Y N 6
5FI CAI CAX SING Y N 7
5FI CAE CAF DOUB Y N 8
5FI CAX NAR SING Y N 9
5FI CAX CAY DOUB Y N 10
5FI NAR CAV DOUB Y N 11
5FI CAA CAJ SING N N 12
5FI CAJ C5 SING N N 13
5FI CAF CAY SING Y N 14
5FI CAY NAS SING Y N 15
5FI CAV NAS SING Y N 16
5FI CAV CAO SING N N 17
5FI CAM CAK SING N N 18
5FI CAM NBA SING N N 19
5FI C5 C6 DOUB Y N 20
5FI C5 C4 SING Y N 21
5FI CAO NAZ SING N N 22
5FI CAK NAZ SING N N 23
5FI C6 N1 SING Y N 24
5FI NAZ CAL SING N N 25
5FI NBA C4 SING N N 26
5FI NBA CAN SING N N 27
5FI C4 N3 DOUB Y N 28
5FI N1 C2 DOUB Y N 29
5FI CAN CAL SING N N 30
5FI N3 C2 SING Y N 31
5FI C6 H1 SING N N 32
5FI CAE H2 SING N N 33
5FI CAF H3 SING N N 34
5FI CAI H4 SING N N 35
5FI CAO H7 SING N N 36
5FI CAO H8 SING N N 37
5FI CAL H10 SING N N 38
5FI CAL H11 SING N N 39
5FI CAN H12 SING N N 40
5FI CAN H13 SING N N 41
5FI CAK H14 SING N N 42
5FI CAK H15 SING N N 43
5FI CAM H16 SING N N 44
5FI CAM H17 SING N N 45
5FI CAJ H18 SING N N 46
5FI CAJ H19 SING N N 47
5FI CAA H20 SING N N 48
5FI CAA H21 SING N N 49
5FI CAA H22 SING N N 50
5FI C2 H23 SING N N 51
5FI NAS H5 SING N N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5FI SMILES ACDLabs 12.01 "FC(F)(F)c1cc2nc(nc2cc1)CN4CCN(c3ncncc3CC)CC4"
5FI InChI InChI 1.03 "InChI=1S/C19H21F3N6/c1-2-13-10-23-12-24-18(13)28-7-5-27(6-8-28)11-17-25-15-4-3-14(19(20,21)22)9-16(15)26-17/h3-4,9-10,12H,2,5-8,11H2,1H3,(H,25,26)"
5FI InChIKey InChI 1.03 FBLPQCAQRNSVHB-UHFFFAOYSA-N
5FI SMILES_CANONICAL CACTVS 3.370 "CCc1cncnc1N2CCN(CC2)Cc3[nH]c4ccc(cc4n3)C(F)(F)F"
5FI SMILES CACTVS 3.370 "CCc1cncnc1N2CCN(CC2)Cc3[nH]c4ccc(cc4n3)C(F)(F)F"
5FI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCc1cncnc1N2CCN(CC2)Cc3[nH]c4ccc(cc4n3)C(F)(F)F"
5FI SMILES "OpenEye OEToolkits" 1.7.6 "CCc1cncnc1N2CCN(CC2)Cc3[nH]c4ccc(cc4n3)C(F)(F)F"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5FI "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole"
5FI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl]-5-(trifluoromethyl)-1H-benzimidazole"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5FI "Create component" 2013-06-17 PDBJ
5FI "Initial release" 2013-07-24 RCSB
#