data_5GF # _chem_comp.id 5GF _chem_comp.name 5-fluoro-beta-D-glucopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H11 F O6" _chem_comp.mon_nstd_parent_comp_id BGC _chem_comp.pdbx_synonyms "5-fluoro-beta-D-glucose; 5-fluoro-D-glucose; 5-fluoro-glucose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-09-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 198.146 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5GF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4BA0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 5GF 5-fluoro-beta-D-glucose PDB ? 2 5GF 5-fluoro-D-glucose PDB ? 3 5GF 5-fluoro-glucose PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5GF O5 O5 O 0 1 N N N N N N 29.917 78.994 35.776 0.248 -1.401 0.098 O5 5GF 1 5GF C1 C1 C 0 1 N N R N N N 28.934 78.547 34.828 -1.131 -1.232 -0.238 C1 5GF 2 5GF F F F 0 1 N N N N N N 29.915 80.840 37.044 0.999 -0.275 -1.773 F 5GF 3 5GF C2 C2 C 0 1 N N R N N N 27.620 79.358 34.765 -1.652 0.064 0.388 C2 5GF 4 5GF O2 O2 O 0 1 N N N N N N 27.563 80.180 33.591 -3.014 0.266 0.005 O2 5GF 5 5GF C3 C3 C 0 1 N N R N N N 27.367 80.214 35.997 -0.803 1.239 -0.107 C3 5GF 6 5GF O3 O3 O 0 1 N N N N N N 25.954 80.370 36.195 -1.235 2.443 0.529 O3 5GF 7 5GF C4 C4 C 0 1 N N S N N N 27.991 79.516 37.192 0.666 0.975 0.241 C4 5GF 8 5GF O4 O4 O 0 1 N N N N N N 27.579 80.161 38.404 1.477 2.030 -0.280 O4 5GF 9 5GF C6 C6 C 0 1 N N N N N N 30.212 78.860 38.183 2.546 -0.656 0.013 C6 5GF 10 5GF O6 O6 O 0 1 N N N N N N 29.874 77.473 38.200 2.646 -0.738 1.436 O6 5GF 11 5GF C5 C5 C 0 1 N N S N N N 29.511 79.571 37.027 1.098 -0.356 -0.380 C5 5GF 12 5GF O1 O1 O 0 1 N Y N N N N 28.696 77.243 35.000 -1.883 -2.339 0.262 O1 5GF 13 5GF H1 H1 H 0 1 N N N N N N 29.391 78.669 33.835 -1.237 -1.180 -1.322 H1 5GF 14 5GF H2 H2 H 0 1 N N N N N N 26.800 78.627 34.709 -1.585 -0.003 1.474 H2 5GF 15 5GF HO1 HO1 H 0 1 N Y N N N N 28.046 76.954 34.371 -1.606 -3.195 -0.092 HO1 5GF 16 5GF HO2 HO2 H 0 1 N Y N N N N 26.746 80.664 33.582 -3.609 -0.444 0.282 HO2 5GF 17 5GF H3 H3 H 0 1 N N N N N N 27.845 81.195 35.860 -0.911 1.338 -1.187 H3 5GF 18 5GF HO3 HO3 H 0 1 N Y N N N N 25.799 80.905 36.965 -2.160 2.668 0.357 HO3 5GF 19 5GF H4 H4 H 0 1 N N N N N N 27.673 78.463 37.197 0.781 0.928 1.324 H4 5GF 20 5GF HO4 HO4 H 0 1 N Y N N N N 27.973 79.720 39.148 1.255 2.905 0.067 HO4 5GF 21 5GF H61 H61 H 0 1 N N N N N N 29.900 79.320 39.132 3.194 0.141 -0.352 H61 5GF 22 5GF H62 H62 H 0 1 N N N N N N 31.301 78.965 38.065 2.852 -1.605 -0.428 H62 5GF 23 5GF HO6 HO6 H 0 1 N Y N N N N 30.318 77.047 38.924 3.538 -0.927 1.757 HO6 5GF 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GF O5 C1 SING N N 1 5GF O5 C5 SING N N 2 5GF C1 C2 SING N N 3 5GF C1 O1 SING N N 4 5GF F C5 SING N N 5 5GF C2 O2 SING N N 6 5GF C2 C3 SING N N 7 5GF C3 O3 SING N N 8 5GF C3 C4 SING N N 9 5GF C4 O4 SING N N 10 5GF C4 C5 SING N N 11 5GF C6 O6 SING N N 12 5GF C6 C5 SING N N 13 5GF C1 H1 SING N N 14 5GF C2 H2 SING N N 15 5GF O1 HO1 SING N N 16 5GF O2 HO2 SING N N 17 5GF C3 H3 SING N N 18 5GF O3 HO3 SING N N 19 5GF C4 H4 SING N N 20 5GF O4 HO4 SING N N 21 5GF C6 H61 SING N N 22 5GF C6 H62 SING N N 23 5GF O6 HO6 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5GF SMILES ACDLabs 12.01 "FC1(OC(O)C(O)C(O)C1O)CO" 5GF InChI InChI 1.03 "InChI=1S/C6H11FO6/c7-6(1-8)4(11)2(9)3(10)5(12)13-6/h2-5,8-12H,1H2/t2-,3-,4+,5-,6-/m1/s1" 5GF InChIKey InChI 1.03 YQZCKDSOGGIGPL-VFUOTHLCSA-N 5GF SMILES_CANONICAL CACTVS 3.385 "OC[C@@]1(F)O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O" 5GF SMILES CACTVS 3.385 "OC[C]1(F)O[CH](O)[CH](O)[CH](O)[CH]1O" 5GF SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C([C@@]1([C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)F)O" 5GF SMILES "OpenEye OEToolkits" 1.9.2 "C(C1(C(C(C(C(O1)O)O)O)O)F)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5GF "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S,6S)-6-fluoro-6-(hydroxymethyl)tetrahydro-2H-pyran-2,3,4,5-tetrol (non-preferred name)" 5GF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R,3R,4R,5S,6S)-6-fluoranyl-6-(hydroxymethyl)oxane-2,3,4,5-tetrol" # _pdbx_chem_comp_related.comp_id 5GF _pdbx_chem_comp_related.related_comp_id BGC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 5GF C1 BGC C1 "Carbohydrate core" 2 5GF C2 BGC C2 "Carbohydrate core" 3 5GF C3 BGC C3 "Carbohydrate core" 4 5GF C4 BGC C4 "Carbohydrate core" 5 5GF C5 BGC C5 "Carbohydrate core" 6 5GF C6 BGC C6 "Carbohydrate core" 7 5GF O1 BGC O1 "Carbohydrate core" 8 5GF O2 BGC O2 "Carbohydrate core" 9 5GF O3 BGC O3 "Carbohydrate core" 10 5GF O4 BGC O4 "Carbohydrate core" 11 5GF O5 BGC O5 "Carbohydrate core" 12 5GF O6 BGC O6 "Carbohydrate core" 13 5GF H1 BGC H1 "Carbohydrate core" 14 5GF H2 BGC H2 "Carbohydrate core" 15 5GF H3 BGC H3 "Carbohydrate core" 16 5GF H4 BGC H4 "Carbohydrate core" 17 5GF H61 BGC H61 "Carbohydrate core" 18 5GF H62 BGC H62 "Carbohydrate core" 19 5GF HO1 BGC HO1 "Carbohydrate core" 20 5GF HO2 BGC HO2 "Carbohydrate core" 21 5GF HO3 BGC HO3 "Carbohydrate core" 22 5GF HO4 BGC HO4 "Carbohydrate core" 23 5GF HO6 BGC HO6 "Carbohydrate core" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 5GF "CARBOHYDRATE ISOMER" D PDB ? 5GF "CARBOHYDRATE RING" pyranose PDB ? 5GF "CARBOHYDRATE ANOMER" beta PDB ? 5GF "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5GF "Create component" 2012-09-09 EBI 5GF "Modify name" 2012-09-10 EBI 5GF "Initial release" 2012-11-09 RCSB 5GF "Modify descriptor" 2014-09-05 RCSB 5GF "Other modification" 2020-07-03 RCSB 5GF "Modify parent residue" 2020-07-17 RCSB 5GF "Modify name" 2020-07-17 RCSB 5GF "Modify synonyms" 2020-07-17 RCSB 5GF "Modify linking type" 2020-07-17 RCSB 5GF "Modify leaving atom flag" 2020-07-17 RCSB 5GF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 5GF _pdbx_chem_comp_pcm.modified_residue_id ASP _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OD2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #