data_5GM # _chem_comp.id 5GM _chem_comp.name "(4S)-2,4-dimethyl-L-norleucine" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H17 N O2" _chem_comp.mon_nstd_parent_comp_id ILE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-09-24 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 159.226 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5GM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code UNDEFINED _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5GM N N N 0 1 N N N Y Y N 66.114 18.136 60.907 -0.820 1.562 0.414 N 5GM 1 5GM CA CA C 0 1 N N S Y N N 66.168 17.559 59.582 -0.862 0.234 -0.213 CA 5GM 2 5GM CB CB C 0 1 N N N N N N 66.853 16.238 59.669 0.292 -0.618 0.320 CB 5GM 3 5GM CC CC C 0 1 N N S N N N 66.976 15.526 58.359 1.623 0.003 -0.106 CC 5GM 4 5GM CD2 CD2 C 0 1 N N N N N N 68.154 14.614 58.523 1.804 1.352 0.594 CD2 5GM 5 5GM CD CD C 0 1 N N N N N N 65.741 14.729 58.015 2.770 -0.932 0.283 CD 5GM 6 5GM CE CE C 0 1 N N N N N N 65.895 13.939 56.926 4.089 -0.372 -0.252 CE 5GM 7 5GM CB2 CB2 C 0 1 N N N N N N 67.065 18.448 58.771 -0.729 0.382 -1.730 CB2 5GM 8 5GM C C C 0 1 N N N Y N Y 64.854 17.457 59.043 -2.173 -0.434 0.114 C 5GM 9 5GM O O O 0 1 N N N Y N Y 64.553 17.877 57.958 -2.215 -1.629 0.284 O 5GM 10 5GM H HAX H 0 1 N N N Y Y N 67.040 18.205 61.279 -1.532 2.165 0.031 HAX 5GM 11 5GM HBA HBA H 0 1 N N N N N N 67.864 16.399 60.071 0.241 -0.659 1.408 HBA 5GM 12 5GM HE6 HE6 H 0 1 N N N N N N 66.282 15.598 60.358 0.215 -1.627 -0.086 HE6 5GM 13 5GM HBD HBD H 0 1 N N N N N N 67.179 16.253 57.559 1.627 0.151 -1.186 HBD 5GM 14 5GM HE8 HE8 H 0 1 N N N N N N 68.313 14.049 57.593 1.079 2.065 0.202 HE8 5GM 15 5GM HE9 HE9 H 0 1 N N N N N N 69.051 15.210 58.747 1.650 1.228 1.666 HE9 5GM 16 5GM HBE HBE H 0 1 N N N N N N 67.963 13.914 59.350 2.813 1.723 0.412 HBE 5GM 17 5GM HE7 HE7 H 0 1 N N N N N N 65.487 14.092 58.875 2.822 -1.009 1.369 HE7 5GM 18 5GM HBB HBB H 0 1 N N N N N N 64.916 15.431 57.823 2.595 -1.919 -0.143 HBB 5GM 19 5GM HBC HBC H 0 1 N N N N N N 64.961 13.391 56.735 4.037 -0.294 -1.338 HBC 5GM 20 5GM HBF HBF H 0 1 N N N N N N 67.143 18.055 57.747 0.219 0.865 -1.967 HBF 5GM 21 5GM HFA HFA H 0 1 N N N N N N 66.645 19.464 58.742 -0.761 -0.604 -2.195 HFA 5GM 22 5GM HFB HFB H 0 1 N N N N N N 68.064 18.477 59.230 -1.551 0.989 -2.109 HFB 5GM 23 5GM H2 H2 H 0 1 N Y N Y Y N 65.707 19.048 60.857 -0.905 1.492 1.416 H2 5GM 24 5GM H1 H1 H 0 1 N Y N N N N 66.139 14.562 56.053 4.265 0.616 0.175 H1 5GM 25 5GM OXT OXT O 0 1 N Y N Y N Y 63.857 16.906 59.794 -3.292 0.299 0.216 OXT 5GM 26 5GM HXT HXT H 0 1 N Y N Y N Y 63.039 16.945 59.312 -4.109 -0.174 0.428 HXT 5GM 27 5GM H3 H3 H 0 1 N Y N N N N 66.710 13.223 57.105 4.906 -1.038 0.026 H3 5GM 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GM N CA SING N N 1 5GM CA C SING N N 2 5GM CA CB SING N N 3 5GM CA CB2 SING N N 4 5GM CB CC SING N N 5 5GM CC CD2 SING N N 6 5GM CC CD SING N N 7 5GM CD CE SING N N 8 5GM C O DOUB N N 9 5GM N H SING N N 10 5GM CB HBA SING N N 11 5GM CB HE6 SING N N 12 5GM CC HBD SING N N 13 5GM CD2 HE8 SING N N 14 5GM CD2 HE9 SING N N 15 5GM CD2 HBE SING N N 16 5GM CD HE7 SING N N 17 5GM CD HBB SING N N 18 5GM CE HBC SING N N 19 5GM CB2 HBF SING N N 20 5GM CB2 HFA SING N N 21 5GM CB2 HFB SING N N 22 5GM N H2 SING N N 23 5GM CE H1 SING N N 24 5GM C OXT SING N N 25 5GM OXT HXT SING N N 26 5GM CE H3 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5GM SMILES ACDLabs 12.01 "NC(C(=O)O)(CC(C)CC)C" 5GM InChI InChI 1.03 "InChI=1S/C8H17NO2/c1-4-6(2)5-8(3,9)7(10)11/h6H,4-5,9H2,1-3H3,(H,10,11)/t6-,8-/m0/s1" 5GM InChIKey InChI 1.03 YWAJMILGBXVJTJ-XPUUQOCRSA-N 5GM SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)C[C@](C)(N)C(O)=O" 5GM SMILES CACTVS 3.385 "CC[CH](C)C[C](C)(N)C(O)=O" 5GM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC[C@H](C)C[C@@](C)(C(=O)O)N" 5GM SMILES "OpenEye OEToolkits" 1.7.6 "CCC(C)CC(C)(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5GM "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-2,4-dimethyl-L-norleucine" 5GM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,4S)-2-azanyl-2,4-dimethyl-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5GM "Create component" 2015-09-24 RCSB 5GM "Initial release" 2016-07-20 RCSB 5GM "Other modification" 2016-07-20 RCSB 5GM "Modify backbone" 2023-11-03 PDBE 5GM "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 5GM LEU Norleucine "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 2 5GM LEU Methylation "Named protein modification" "Amino-acid side chain and backbone" "Any position" ? ? ? ? #