data_5GP # _chem_comp.id 5GP _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces CPG _chem_comp.formula_weight 363.221 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5GP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5GP P P P 0 1 N N N N N N 28.350 67.689 25.476 5.076 -0.808 -0.277 P 5GP 1 5GP O1P O1P O 0 1 N N N N N N 28.751 66.438 24.826 5.916 0.337 0.139 O1P 5GP 2 5GP O2P O2P O 0 1 N Y N N N N 27.100 67.524 26.318 4.843 -1.787 0.980 O2P 5GP 3 5GP O3P O3P O 0 1 N N N N N N 29.531 68.265 26.332 5.815 -1.615 -1.457 O3P 5GP 4 5GP "O5'" O5* O 0 1 N N N N N N 28.028 68.889 24.409 3.655 -0.266 -0.806 "O5'" 5GP 5 5GP "C5'" C5* C 0 1 N N N N N N 27.778 70.273 24.855 3.104 0.537 0.240 "C5'" 5GP 6 5GP "C4'" C4* C 0 1 N N R N N N 27.488 71.273 23.710 1.745 1.086 -0.200 "C4'" 5GP 7 5GP "O4'" O4* O 0 1 N N N N N N 26.324 72.100 24.160 0.792 0.011 -0.345 "O4'" 5GP 8 5GP "C3'" C3* C 0 1 N N S N N N 28.530 72.326 23.342 1.149 1.997 0.896 "C3'" 5GP 9 5GP "O3'" O3* O 0 1 N N N N N N 29.505 71.871 22.416 1.399 3.371 0.596 "O3'" 5GP 10 5GP "C2'" C2* C 0 1 N N R N N N 27.718 73.488 22.759 -0.368 1.698 0.850 "C2'" 5GP 11 5GP "O2'" O2* O 0 1 N N N N N N 27.482 73.333 21.343 -1.101 2.880 0.522 "O2'" 5GP 12 5GP "C1'" C1* C 0 1 N N R N N N 26.437 73.441 23.576 -0.506 0.640 -0.267 "C1'" 5GP 13 5GP N9 N9 N 0 1 Y N N N N N 26.175 74.503 24.598 -1.530 -0.346 0.088 N9 5GP 14 5GP C8 C8 C 0 1 Y N N N N N 25.184 75.459 24.638 -1.319 -1.538 0.717 C8 5GP 15 5GP N7 N7 N 0 1 Y N N N N N 25.150 76.194 25.730 -2.451 -2.160 0.875 N7 5GP 16 5GP C5 C5 C 0 1 Y N N N N N 26.225 75.666 26.473 -3.452 -1.407 0.358 C5 5GP 17 5GP C6 C6 C 0 1 N N N N N N 26.695 76.059 27.770 -4.853 -1.572 0.249 C6 5GP 18 5GP O6 O6 O 0 1 N N N N N N 26.257 76.940 28.501 -5.399 -2.574 0.677 O6 5GP 19 5GP N1 N1 N 0 1 N N N N N N 27.817 75.273 28.180 -5.571 -0.589 -0.338 N1 5GP 20 5GP C2 C2 C 0 1 N N N N N N 28.377 74.254 27.412 -4.949 0.524 -0.819 C2 5GP 21 5GP N2 N2 N 0 1 N N N N N N 29.431 73.644 27.993 -5.703 1.503 -1.415 N2 5GP 22 5GP N3 N3 N 0 1 N N N N N N 27.937 73.882 26.195 -3.648 0.689 -0.723 N3 5GP 23 5GP C4 C4 C 0 1 Y N N N N N 26.857 74.634 25.789 -2.874 -0.239 -0.150 C4 5GP 24 5GP HOP2 2HOP H 0 0 N N N N N N 27.339 67.489 27.237 4.292 -2.517 0.666 HOP2 5GP 25 5GP HOP3 3HOP H 0 0 N N N N N N 30.295 68.381 25.780 6.660 -1.922 -1.100 HOP3 5GP 26 5GP "H5'1" 1H5* H 0 0 N N N N N N 26.902 70.260 25.521 3.778 1.366 0.455 "H5'1" 5GP 27 5GP "H5'2" 2H5* H 0 0 N N N N N N 28.699 70.617 25.349 2.977 -0.071 1.136 "H5'2" 5GP 28 5GP "H4'" H4* H 0 1 N N N N N N 27.386 70.618 22.832 1.844 1.634 -1.137 "H4'" 5GP 29 5GP "H3'" H3* H 0 1 N N N N N N 29.118 72.608 24.228 1.561 1.739 1.872 "H3'" 5GP 30 5GP "HO3'" *HO3 H 0 0 N N N N N N 29.106 71.769 21.560 1.007 3.890 1.311 "HO3'" 5GP 31 5GP "H2'" H2* H 0 1 N N N N N N 28.233 74.457 22.827 -0.706 1.292 1.803 "H2'" 5GP 32 5GP "HO2'" *HO2 H 0 0 N N N N N N 26.547 73.299 21.179 -0.926 3.522 1.224 "HO2'" 5GP 33 5GP "H1'" H1* H 0 1 N N N N N N 25.646 73.674 22.848 -0.754 1.118 -1.215 "H1'" 5GP 34 5GP H8 H8 H 0 1 N N N N N N 24.482 75.596 23.828 -0.356 -1.910 1.037 H8 5GP 35 5GP HN1 HN1 H 0 1 N N N N N N 28.225 75.466 29.072 -6.533 -0.680 -0.425 HN1 5GP 36 5GP HN21 1HN2 H 0 0 N N N N N N 29.767 72.932 27.376 -5.275 2.303 -1.759 HN21 5GP 37 5GP HN22 2HN2 H 0 0 N N N N N N 29.812 73.867 28.890 -6.663 1.394 -1.497 HN22 5GP 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P O1P DOUB N N 1 5GP P O2P SING N N 2 5GP P O3P SING N N 3 5GP P "O5'" SING N N 4 5GP O2P HOP2 SING N N 5 5GP O3P HOP3 SING N N 6 5GP "O5'" "C5'" SING N N 7 5GP "C5'" "C4'" SING N N 8 5GP "C5'" "H5'1" SING N N 9 5GP "C5'" "H5'2" SING N N 10 5GP "C4'" "O4'" SING N N 11 5GP "C4'" "C3'" SING N N 12 5GP "C4'" "H4'" SING N N 13 5GP "O4'" "C1'" SING N N 14 5GP "C3'" "O3'" SING N N 15 5GP "C3'" "C2'" SING N N 16 5GP "C3'" "H3'" SING N N 17 5GP "O3'" "HO3'" SING N N 18 5GP "C2'" "O2'" SING N N 19 5GP "C2'" "C1'" SING N N 20 5GP "C2'" "H2'" SING N N 21 5GP "O2'" "HO2'" SING N N 22 5GP "C1'" N9 SING N N 23 5GP "C1'" "H1'" SING N N 24 5GP N9 C8 SING Y N 25 5GP N9 C4 SING Y N 26 5GP C8 N7 DOUB Y N 27 5GP C8 H8 SING N N 28 5GP N7 C5 SING Y N 29 5GP C5 C6 SING N N 30 5GP C5 C4 DOUB Y N 31 5GP C6 O6 DOUB N N 32 5GP C6 N1 SING N N 33 5GP N1 C2 SING N N 34 5GP N1 HN1 SING N N 35 5GP C2 N2 SING N N 36 5GP C2 N3 DOUB N N 37 5GP N2 HN21 SING N N 38 5GP N2 HN22 SING N N 39 5GP N3 C4 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5GP SMILES ACDLabs 10.04 "O=C1c2ncn(c2N=C(N)N1)C3OC(C(O)C3O)COP(=O)(O)O" 5GP SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" 5GP SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" 5GP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N=C(NC2=O)N" 5GP SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)O)O)O)N=C(NC2=O)N" 5GP InChI InChI 1.03 "InChI=1S/C10H14N5O8P/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(23-9)1-22-24(19,20)21/h2-3,5-6,9,16-17H,1H2,(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1" 5GP InChIKey InChI 1.03 RQFCJASXJCIDSX-UUOKFMHZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5GP "SYSTEMATIC NAME" ACDLabs 10.04 ;5'-guanylic acid ; 5GP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5GP "Create component" 1999-07-08 RCSB 5GP "Modify descriptor" 2011-06-04 RCSB 5GP "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 5GP ARG None "Covalent chemical modification" "Amino-acid side chain" "Any position" P NH1 ? ? 2 5GP HIS None "Covalent chemical modification" "Amino-acid side chain" "Any position" P NE2 ? ? #