data_5GW # _chem_comp.id 5GW _chem_comp.name ;5-phenyluridine 5'-(trihydrogen diphosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H18 N2 O12 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-01-04 _chem_comp.pdbx_modified_date 2013-01-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.257 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5GW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3V0M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5GW CAM CAM C 0 1 Y N N 35.292 55.148 1.510 -5.595 -2.709 -0.355 CAM 5GW 1 5GW CAK CAK C 0 1 Y N N 36.477 55.721 1.971 -6.650 -3.335 -0.986 CAK 5GW 2 5GW CAJ CAJ C 0 1 Y N N 36.964 55.393 3.228 -7.615 -2.585 -1.634 CAJ 5GW 3 5GW CAL CAL C 0 1 Y N N 36.266 54.488 4.032 -7.529 -1.204 -1.652 CAL 5GW 4 5GW CAN CAN C 0 1 Y N N 35.086 53.919 3.572 -6.477 -0.567 -1.025 CAN 5GW 5 5GW CAU CAU C 0 1 Y N N 34.594 54.253 2.312 -5.502 -1.318 -0.370 CAU 5GW 6 5GW CAV CAV C 0 1 N N N 33.327 53.630 1.814 -4.370 -0.640 0.306 CAV 5GW 7 5GW CAO CAO C 0 1 N N N 32.855 52.425 2.343 -3.453 0.072 -0.410 CAO 5GW 8 5GW CAW CAW C 0 1 N N N 32.589 54.238 0.788 -4.212 -0.712 1.765 CAW 5GW 9 5GW OAA OAA O 0 1 N N N 33.008 55.391 0.252 -5.008 -1.333 2.445 OAA 5GW 10 5GW NAQ NAQ N 0 1 N N N 31.453 53.658 0.343 -3.165 -0.078 2.335 NAQ 5GW 11 5GW CAX CAX C 0 1 N N N 31.032 52.483 0.894 -2.290 0.604 1.576 CAX 5GW 12 5GW OAB OAB O 0 1 N N N 29.982 51.956 0.475 -1.356 1.167 2.112 OAB 5GW 13 5GW NBC NBC N 0 1 N N N 31.700 51.880 1.861 -2.422 0.686 0.242 NBC 5GW 14 5GW "C1'" "C1'" C 0 1 N N R 31.204 50.615 2.423 -1.436 1.444 -0.532 "C1'" 5GW 15 5GW "O4'" "O4'" O 0 1 N N N 31.756 50.480 3.767 -0.100 0.982 -0.234 "O4'" 5GW 16 5GW "C2'" "C2'" C 0 1 N N R 31.679 49.484 1.630 -1.444 2.929 -0.105 "C2'" 5GW 17 5GW "O2'" "O2'" O 0 1 N N N 30.763 48.440 1.728 -2.221 3.707 -1.017 "O2'" 5GW 18 5GW "C3'" "C3'" C 0 1 N N S 32.917 49.144 2.336 0.043 3.346 -0.168 "C3'" 5GW 19 5GW "O3'" "O3'" O 0 1 N N N 33.209 47.825 2.022 0.228 4.394 -1.121 "O3'" 5GW 20 5GW "C4'" "C4'" C 0 1 N N R 32.542 49.312 3.759 0.773 2.064 -0.625 "C4'" 5GW 21 5GW "C5'" "C5'" C 0 1 N N N 33.717 49.498 4.651 2.124 1.940 0.082 "C5'" 5GW 22 5GW "O5'" "O5'" O 0 1 N N N 34.653 50.429 4.240 2.833 0.813 -0.439 "O5'" 5GW 23 5GW PBE PBE P 0 1 N N N 36.094 49.948 3.719 4.296 0.383 0.077 PBE 5GW 24 5GW OAI OAI O 0 1 N N N 35.967 48.608 2.999 5.357 1.535 -0.296 OAI 5GW 25 5GW OAD OAD O 0 1 N N N 36.716 50.982 2.847 4.266 0.196 1.545 OAD 5GW 26 5GW OAT OAT O 0 1 N N N 36.862 49.786 5.049 4.730 -0.997 -0.631 OAT 5GW 27 5GW PBD PBD P 0 1 N N N 38.105 48.864 5.405 5.812 -2.138 -0.287 PBD 5GW 28 5GW OAG OAG O 0 1 N N N 37.872 47.435 5.082 6.139 -2.986 -1.616 OAG 5GW 29 5GW OAH OAH O 0 1 N N N 39.301 49.380 4.554 7.053 -1.507 0.213 OAH 5GW 30 5GW OAC OAC O 0 1 N N N 38.453 49.128 6.823 5.216 -3.119 0.842 OAC 5GW 31 5GW H1 H1 H 0 1 N N N 34.917 55.400 0.529 -4.844 -3.295 0.154 H1 5GW 32 5GW H2 H2 H 0 1 N N N 37.016 56.420 1.349 -6.722 -4.412 -0.975 H2 5GW 33 5GW H3 H3 H 0 1 N N N 37.882 55.837 3.585 -8.439 -3.079 -2.127 H3 5GW 34 5GW H4 H4 H 0 1 N N N 36.644 54.231 5.011 -8.285 -0.623 -2.159 H4 5GW 35 5GW H5 H5 H 0 1 N N N 34.549 53.216 4.192 -6.411 0.510 -1.040 H5 5GW 36 5GW H6 H6 H 0 1 N N N 33.402 51.927 3.130 -3.542 0.149 -1.483 H6 5GW 37 5GW H7 H7 H 0 1 N N N 30.923 54.088 -0.387 -3.045 -0.115 3.296 H7 5GW 38 5GW H8 H8 H 0 1 N N N 30.105 50.621 2.460 -1.639 1.353 -1.599 H8 5GW 39 5GW H9 H9 H 0 1 N N N 31.877 49.777 0.588 -1.828 3.035 0.910 H9 5GW 40 5GW H10 H10 H 0 1 N N N 29.966 48.673 1.267 -2.212 4.656 -0.831 H10 5GW 41 5GW H11 H11 H 0 1 N N N 33.732 49.830 2.061 0.394 3.655 0.816 H11 5GW 42 5GW H12 H12 H 0 1 N N N 34.009 47.564 2.462 -0.258 5.204 -0.914 H12 5GW 43 5GW H13 H13 H 0 1 N N N 31.956 48.444 4.094 0.909 2.069 -1.707 H13 5GW 44 5GW H14 H14 H 0 1 N N N 33.344 49.810 5.637 2.707 2.845 -0.087 H14 5GW 45 5GW H15 H15 H 0 1 N N N 34.226 48.527 4.742 1.964 1.805 1.151 H15 5GW 46 5GW H16 H16 H 0 1 N N N 36.314 48.687 2.118 5.429 1.711 -1.244 H16 5GW 47 5GW H17 H17 H 0 1 N N N 38.501 47.151 4.430 6.785 -3.693 -1.482 H17 5GW 48 5GW H18 H18 H 0 1 N N N 39.307 49.541 6.868 4.400 -3.568 0.583 H18 5GW 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GW OAA CAW DOUB N N 1 5GW NAQ CAW SING N N 2 5GW NAQ CAX SING N N 3 5GW OAB CAX DOUB N N 4 5GW CAW CAV SING N N 5 5GW CAX NBC SING N N 6 5GW CAM CAK DOUB Y N 7 5GW CAM CAU SING Y N 8 5GW "C2'" "O2'" SING N N 9 5GW "C2'" "C3'" SING N N 10 5GW "C2'" "C1'" SING N N 11 5GW CAV CAU SING N N 12 5GW CAV CAO DOUB N N 13 5GW NBC CAO SING N N 14 5GW NBC "C1'" SING N N 15 5GW CAK CAJ SING Y N 16 5GW "O3'" "C3'" SING N N 17 5GW CAU CAN DOUB Y N 18 5GW "C3'" "C4'" SING N N 19 5GW "C1'" "O4'" SING N N 20 5GW OAD PBE DOUB N N 21 5GW OAI PBE SING N N 22 5GW CAJ CAL DOUB Y N 23 5GW CAN CAL SING Y N 24 5GW PBE "O5'" SING N N 25 5GW PBE OAT SING N N 26 5GW "C4'" "O4'" SING N N 27 5GW "C4'" "C5'" SING N N 28 5GW "O5'" "C5'" SING N N 29 5GW OAH PBD DOUB N N 30 5GW OAT PBD SING N N 31 5GW OAG PBD SING N N 32 5GW PBD OAC SING N N 33 5GW CAM H1 SING N N 34 5GW CAK H2 SING N N 35 5GW CAJ H3 SING N N 36 5GW CAL H4 SING N N 37 5GW CAN H5 SING N N 38 5GW CAO H6 SING N N 39 5GW NAQ H7 SING N N 40 5GW "C1'" H8 SING N N 41 5GW "C2'" H9 SING N N 42 5GW "O2'" H10 SING N N 43 5GW "C3'" H11 SING N N 44 5GW "O3'" H12 SING N N 45 5GW "C4'" H13 SING N N 46 5GW "C5'" H14 SING N N 47 5GW "C5'" H15 SING N N 48 5GW OAI H16 SING N N 49 5GW OAG H17 SING N N 50 5GW OAC H18 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5GW SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OCC3OC(N2C(=O)NC(=O)C(c1ccccc1)=C2)C(O)C3O" 5GW InChI InChI 1.03 "InChI=1S/C15H18N2O12P2/c18-11-10(7-27-31(25,26)29-30(22,23)24)28-14(12(11)19)17-6-9(13(20)16-15(17)21)8-4-2-1-3-5-8/h1-6,10-12,14,18-19H,7H2,(H,25,26)(H,16,20,21)(H2,22,23,24)/t10-,11-,12-,14-/m1/s1" 5GW InChIKey InChI 1.03 YEGUYIFHFHBENO-HKUMRIAESA-N 5GW SMILES_CANONICAL CACTVS 3.370 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3ccccc3" 5GW SMILES CACTVS 3.370 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3ccccc3" 5GW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C2=CN(C(=O)NC2=O)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)O)O" 5GW SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C2=CN(C(=O)NC2=O)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5GW "SYSTEMATIC NAME" ACDLabs 12.01 ;5-phenyluridine 5'-(trihydrogen diphosphate) ; 5GW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)-5-phenyl-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5GW "Create component" 2012-01-04 RCSB 5GW "Initial release" 2013-01-18 RCSB #