data_5HD # _chem_comp.id 5HD _chem_comp.name "5-(2-hydroxyethyl)nonane-1,9-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H24 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-07-24 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 204.306 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5HD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3DWB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5HD C1 C1 C 0 1 N N N 72.210 18.099 52.759 -2.080 -0.613 0.199 C1 5HD 1 5HD C2 C2 C 0 1 N N N 73.610 18.229 53.355 -3.547 -0.681 -0.233 C2 5HD 2 5HD C3 C3 C 0 1 N N N 74.161 16.890 53.821 -4.192 -1.941 0.348 C3 5HD 3 5HD O14 O14 O 0 1 N N N 65.322 18.966 49.525 5.281 -2.477 -0.123 O14 5HD 4 5HD C13 C13 C 0 1 N N N 66.300 17.929 49.481 4.483 -1.398 0.369 C13 5HD 5 5HD C12 C12 C 0 1 N N N 67.431 18.311 50.410 3.092 -1.463 -0.265 C12 5HD 6 5HD C11 C11 C 0 1 N N N 68.382 17.145 50.677 2.237 -0.308 0.262 C11 5HD 7 5HD C10 C10 C 0 1 N N N 69.716 17.660 51.221 0.846 -0.373 -0.372 C10 5HD 8 5HD C6 C6 C 0 1 N N N 70.967 16.859 50.832 -0.008 0.782 0.154 C6 5HD 9 5HD C7 C7 C 0 1 N N N 70.970 16.543 49.325 0.588 2.112 -0.312 C7 5HD 10 5HD C8 C8 C 0 1 N N N 72.345 16.283 48.734 -0.183 3.268 0.327 C8 5HD 11 5HD O9 O9 O 0 1 N N N 72.231 16.250 47.313 0.448 4.505 -0.011 O9 5HD 12 5HD C5 C5 C 0 1 N N N 72.228 17.650 51.288 -1.435 0.646 -0.382 C5 5HD 13 5HD O4 O4 O 0 1 N N N 75.596 16.895 53.822 -5.561 -2.003 -0.055 O4 5HD 14 5HD H1 H1 H 0 1 N N N 71.716 19.080 52.816 -2.023 -0.582 1.287 H1 5HD 15 5HD H1A H1A H 0 1 N N N 71.673 17.331 53.335 -1.553 -1.494 -0.168 H1A 5HD 16 5HD H2 H2 H 0 1 N N N 74.282 18.636 52.586 -4.074 0.200 0.134 H2 5HD 17 5HD H2A H2A H 0 1 N N N 73.547 18.893 54.229 -3.604 -0.712 -1.321 H2A 5HD 18 5HD H3 H3 H 0 1 N N N 73.804 16.693 54.843 -3.664 -2.821 -0.019 H3 5HD 19 5HD H3A H3A H 0 1 N N N 73.814 16.108 53.130 -4.135 -1.910 1.436 H3A 5HD 20 5HD HO14 HO14 H 0 0 N N N 65.105 19.159 50.429 6.178 -2.498 0.237 HO14 5HD 21 5HD H13 H13 H 0 1 N N N 65.853 16.978 49.805 4.393 -1.477 1.452 H13 5HD 22 5HD H13A H13A H 0 0 N N N 66.676 17.804 48.455 4.955 -0.450 0.112 H13A 5HD 23 5HD H12 H12 H 0 1 N N N 68.002 19.129 49.947 3.182 -1.383 -1.348 H12 5HD 24 5HD H12A H12A H 0 0 N N N 66.991 18.615 51.371 2.619 -2.411 -0.008 H12A 5HD 25 5HD H11 H11 H 0 1 N N N 67.927 16.470 51.416 2.147 -0.387 1.345 H11 5HD 26 5HD H11A H11A H 0 0 N N N 68.563 16.608 49.734 2.710 0.640 0.005 H11A 5HD 27 5HD H10 H10 H 0 1 N N N 69.851 18.682 50.837 0.936 -0.294 -1.455 H10 5HD 28 5HD H10A H10A H 0 0 N N N 69.641 17.579 52.315 0.374 -1.321 -0.115 H10A 5HD 29 5HD H6 H6 H 0 1 N N N 70.970 15.885 51.343 -0.025 0.754 1.244 H6 5HD 30 5HD H7 H7 H 0 1 N N N 70.362 15.640 49.170 1.635 2.164 -0.016 H7 5HD 31 5HD H7A H7A H 0 1 N N N 70.573 17.434 48.817 0.513 2.182 -1.398 H7A 5HD 32 5HD H8 H8 H 0 1 N N N 73.036 17.085 49.033 -1.208 3.270 -0.042 H8 5HD 33 5HD H8A H8A H 0 1 N N N 72.736 15.323 49.101 -0.187 3.147 1.411 H8A 5HD 34 5HD HO9 HO9 H 0 1 N N N 71.313 16.243 47.069 0.012 5.284 0.362 HO9 5HD 35 5HD H5 H5 H 0 1 N N N 72.302 18.552 50.663 -1.409 0.573 -1.469 H5 5HD 36 5HD H5A H5A H 0 1 N N N 73.083 16.966 51.180 -2.017 1.520 -0.090 H5A 5HD 37 5HD HO4 HO4 H 0 1 N N N 75.914 16.896 52.927 -6.034 -2.779 0.278 HO4 5HD 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5HD C5 C1 SING N N 1 5HD C1 C2 SING N N 2 5HD C1 H1 SING N N 3 5HD C1 H1A SING N N 4 5HD C2 C3 SING N N 5 5HD C2 H2 SING N N 6 5HD C2 H2A SING N N 7 5HD C3 O4 SING N N 8 5HD C3 H3 SING N N 9 5HD C3 H3A SING N N 10 5HD C13 O14 SING N N 11 5HD O14 HO14 SING N N 12 5HD C13 C12 SING N N 13 5HD C13 H13 SING N N 14 5HD C13 H13A SING N N 15 5HD C12 C11 SING N N 16 5HD C12 H12 SING N N 17 5HD C12 H12A SING N N 18 5HD C11 C10 SING N N 19 5HD C11 H11 SING N N 20 5HD C11 H11A SING N N 21 5HD C6 C10 SING N N 22 5HD C10 H10 SING N N 23 5HD C10 H10A SING N N 24 5HD C7 C6 SING N N 25 5HD C6 C5 SING N N 26 5HD C6 H6 SING N N 27 5HD C8 C7 SING N N 28 5HD C7 H7 SING N N 29 5HD C7 H7A SING N N 30 5HD O9 C8 SING N N 31 5HD C8 H8 SING N N 32 5HD C8 H8A SING N N 33 5HD O9 HO9 SING N N 34 5HD C5 H5 SING N N 35 5HD C5 H5A SING N N 36 5HD O4 HO4 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5HD SMILES ACDLabs 10.04 "OCCCCC(CCO)CCCCO" 5HD SMILES_CANONICAL CACTVS 3.341 "OCCCCC(CCO)CCCCO" 5HD SMILES CACTVS 3.341 "OCCCCC(CCO)CCCCO" 5HD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CCO)CC(CCCCO)CCO" 5HD SMILES "OpenEye OEToolkits" 1.5.0 "C(CCO)CC(CCCCO)CCO" 5HD InChI InChI 1.03 "InChI=1S/C11H24O3/c12-8-3-1-5-11(7-10-14)6-2-4-9-13/h11-14H,1-10H2" 5HD InChIKey InChI 1.03 VICIXNZSEUYGFV-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5HD "SYSTEMATIC NAME" ACDLabs 10.04 "5-(2-hydroxyethyl)nonane-1,9-diol" 5HD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-(2-hydroxyethyl)nonane-1,9-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5HD "Create component" 2008-07-24 PDBJ 5HD "Modify descriptor" 2011-06-04 RCSB #