data_5HV # _chem_comp.id 5HV _chem_comp.name ;N-[2-(diethylamino)ethyl]-2-{2-[(4-fluorobenzyl)sulfanyl]-4-oxo-4,5,6,7-tetrahydro-1H-cyclopenta[d]pyrimidin-1-yl}-N-{[ 4'-(trifluoromethyl)biphenyl-4-yl]methyl}acetamide ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H38 F4 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Darapladib _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-09-28 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 666.771 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5HV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5HV C01 C1 C 0 1 N N N ? ? ? -3.357 5.608 3.729 C01 5HV 1 5HV C05 C2 C 0 1 N N N ? ? ? -3.173 5.236 2.256 C05 5HV 2 5HV N08 N1 N 0 1 N N N ? ? ? -4.038 4.096 1.926 N08 5HV 3 5HV C09 C3 C 0 1 N N N ? ? ? -5.457 4.468 2.018 C09 5HV 4 5HV C12 C4 C 0 1 N N N ? ? ? -6.314 3.201 2.068 C12 5HV 5 5HV C16 C5 C 0 1 N N N ? ? ? -3.720 3.560 0.596 C16 5HV 6 5HV C19 C6 C 0 1 N N N ? ? ? -2.424 2.750 0.670 C19 5HV 7 5HV N22 N2 N 0 1 N N N ? ? ? -2.166 2.122 -0.629 N22 5HV 8 5HV C23 C7 C 0 1 N N N ? ? ? -1.377 2.830 -1.640 C23 5HV 9 5HV C26 C8 C 0 1 Y N N ? ? ? 0.081 2.490 -1.469 C26 5HV 10 5HV C27 C9 C 0 1 Y N N ? ? ? 0.619 1.406 -2.140 C27 5HV 11 5HV C29 C10 C 0 1 Y N N ? ? ? 1.954 1.090 -1.987 C29 5HV 12 5HV C31 C11 C 0 1 Y N N ? ? ? 2.760 1.864 -1.155 C31 5HV 13 5HV C32 C12 C 0 1 Y N N ? ? ? 2.213 2.954 -0.482 C32 5HV 14 5HV C34 C13 C 0 1 Y N N ? ? ? 0.878 3.265 -0.646 C34 5HV 15 5HV C36 C14 C 0 1 Y N N ? ? ? 4.195 1.529 -0.987 C36 5HV 16 5HV C37 C15 C 0 1 Y N N ? ? ? 5.001 2.303 -0.155 C37 5HV 17 5HV C39 C16 C 0 1 Y N N ? ? ? 6.336 1.987 -0.002 C39 5HV 18 5HV C41 C17 C 0 1 Y N N ? ? ? 6.874 0.904 -0.673 C41 5HV 19 5HV C42 C18 C 0 1 Y N N ? ? ? 6.078 0.132 -1.501 C42 5HV 20 5HV C44 C19 C 0 1 Y N N ? ? ? 4.741 0.435 -1.656 C44 5HV 21 5HV C46 C20 C 0 1 N N N ? ? ? 8.332 0.563 -0.502 C46 5HV 22 5HV F47 F1 F 0 1 N N N ? ? ? 8.481 -0.323 0.570 F47 5HV 23 5HV F48 F2 F 0 1 N N N ? ? ? 8.811 -0.035 -1.673 F48 5HV 24 5HV F49 F3 F 0 1 N N N ? ? ? 9.057 1.732 -0.245 F49 5HV 25 5HV C50 C21 C 0 1 N N N ? ? ? -2.654 0.894 -0.893 C50 5HV 26 5HV O51 O1 O 0 1 N N N ? ? ? -2.440 0.375 -1.968 O51 5HV 27 5HV C52 C22 C 0 1 N N N ? ? ? -3.465 0.166 0.148 C52 5HV 28 5HV N55 N3 N 0 1 N N N ? ? ? -3.877 -1.138 -0.378 N55 5HV 29 5HV C56 C23 C 0 1 N N N ? ? ? -5.057 -1.253 -1.060 C56 5HV 30 5HV C57 C24 C 0 1 N N N ? ? ? -6.103 -0.214 -1.397 C57 5HV 31 5HV C60 C25 C 0 1 N N N ? ? ? -7.362 -1.023 -1.779 C60 5HV 32 5HV C63 C26 C 0 1 N N N ? ? ? -6.750 -2.358 -2.258 C63 5HV 33 5HV C66 C27 C 0 1 N N N ? ? ? -5.421 -2.457 -1.543 C66 5HV 34 5HV C67 C28 C 0 1 N N N ? ? ? -4.567 -3.572 -1.329 C67 5HV 35 5HV O68 O2 O 0 1 N N N ? ? ? -4.875 -4.673 -1.758 O68 5HV 36 5HV N69 N4 N 0 1 N N N ? ? ? -3.421 -3.408 -0.655 N69 5HV 37 5HV C70 C29 C 0 1 N N N ? ? ? -3.079 -2.223 -0.190 C70 5HV 38 5HV S71 S1 S 0 1 N N N ? ? ? -1.561 -2.041 0.686 S71 5HV 39 5HV C72 C30 C 0 1 N N N ? ? ? -0.957 -3.746 0.625 C72 5HV 40 5HV C75 C31 C 0 1 Y N N ? ? ? 0.370 -3.834 1.334 C75 5HV 41 5HV C76 C32 C 0 1 Y N N ? ? ? 1.543 -3.632 0.631 C76 5HV 42 5HV C78 C33 C 0 1 Y N N ? ? ? 2.761 -3.713 1.279 C78 5HV 43 5HV C80 C34 C 0 1 Y N N ? ? ? 2.806 -3.996 2.634 C80 5HV 44 5HV F81 F4 F 0 1 N N N ? ? ? 3.995 -4.074 3.269 F81 5HV 45 5HV C82 C35 C 0 1 Y N N ? ? ? 1.630 -4.197 3.337 C82 5HV 46 5HV C84 C36 C 0 1 Y N N ? ? ? 0.413 -4.111 2.687 C84 5HV 47 5HV H1 H1 H 0 1 N N N ? ? ? -2.715 6.454 3.973 H1 5HV 48 5HV H2 H2 H 0 1 N N N ? ? ? -4.398 5.878 3.908 H2 5HV 49 5HV H3 H3 H 0 1 N N N ? ? ? -3.090 4.756 4.354 H3 5HV 50 5HV H4 H4 H 0 1 N N N ? ? ? -3.440 6.088 1.630 H4 5HV 51 5HV H5 H5 H 0 1 N N N ? ? ? -2.132 4.966 2.077 H5 5HV 52 5HV H7 H7 H 0 1 N N N ? ? ? -5.621 5.053 2.923 H7 5HV 53 5HV H8 H8 H 0 1 N N N ? ? ? -5.734 5.060 1.146 H8 5HV 54 5HV H9 H9 H 0 1 N N N ? ? ? -7.367 3.477 2.122 H9 5HV 55 5HV H10 H10 H 0 1 N N N ? ? ? -6.139 2.609 1.170 H10 5HV 56 5HV H11 H11 H 0 1 N N N ? ? ? -6.046 2.615 2.947 H11 5HV 57 5HV H12 H12 H 0 1 N N N ? ? ? -4.532 2.917 0.259 H12 5HV 58 5HV H13 H13 H 0 1 N N N ? ? ? -3.593 4.384 -0.107 H13 5HV 59 5HV H14 H14 H 0 1 N N N ? ? ? -1.596 3.411 0.925 H14 5HV 60 5HV H15 H15 H 0 1 N N N ? ? ? -2.521 1.978 1.433 H15 5HV 61 5HV H16 H16 H 0 1 N N N ? ? ? -1.706 2.529 -2.634 H16 5HV 62 5HV H17 H17 H 0 1 N N N ? ? ? -1.515 3.905 -1.522 H17 5HV 63 5HV H18 H18 H 0 1 N N N ? ? ? -0.007 0.807 -2.785 H18 5HV 64 5HV H19 H19 H 0 1 N N N ? ? ? 2.372 0.244 -2.512 H19 5HV 65 5HV H20 H20 H 0 1 N N N ? ? ? 2.833 3.558 0.165 H20 5HV 66 5HV H21 H21 H 0 1 N N N ? ? ? 0.454 4.112 -0.127 H21 5HV 67 5HV H22 H22 H 0 1 N N N ? ? ? 4.582 3.150 0.369 H22 5HV 68 5HV H23 H23 H 0 1 N N N ? ? ? 6.962 2.586 0.643 H23 5HV 69 5HV H24 H24 H 0 1 N N N ? ? ? 6.504 -0.713 -2.023 H24 5HV 70 5HV H25 H25 H 0 1 N N N ? ? ? 4.120 -0.171 -2.298 H25 5HV 71 5HV H26 H26 H 0 1 N N N ? ? ? -2.862 0.023 1.044 H26 5HV 72 5HV H27 H27 H 0 1 N N N ? ? ? -4.350 0.753 0.395 H27 5HV 73 5HV H28 H28 H 0 1 N N N ? ? ? -6.306 0.415 -0.530 H28 5HV 74 5HV H29 H29 H 0 1 N N N ? ? ? -5.774 0.396 -2.238 H29 5HV 75 5HV H30 H30 H 0 1 N N N ? ? ? -8.004 -1.177 -0.911 H30 5HV 76 5HV H31 H31 H 0 1 N N N ? ? ? -7.910 -0.534 -2.584 H31 5HV 77 5HV H32 H32 H 0 1 N N N ? ? ? -7.394 -3.191 -1.978 H32 5HV 78 5HV H33 H33 H 0 1 N N N ? ? ? -6.600 -2.340 -3.337 H33 5HV 79 5HV H34 H34 H 0 1 N N N ? ? ? -1.675 -4.404 1.115 H34 5HV 80 5HV H35 H35 H 0 1 N N N ? ? ? -0.835 -4.051 -0.414 H35 5HV 81 5HV H36 H36 H 0 1 N N N ? ? ? 1.508 -3.412 -0.426 H36 5HV 82 5HV H37 H37 H 0 1 N N N ? ? ? 3.677 -3.556 0.730 H37 5HV 83 5HV H38 H38 H 0 1 N N N ? ? ? 1.664 -4.418 4.394 H38 5HV 84 5HV H39 H39 H 0 1 N N N ? ? ? -0.504 -4.265 3.236 H39 5HV 85 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5HV O68 C67 DOUB N N 1 5HV C63 C60 SING N N 2 5HV C63 C66 SING N N 3 5HV C60 C57 SING N N 4 5HV C67 C66 SING N N 5 5HV C67 N69 SING N N 6 5HV C66 C56 DOUB N N 7 5HV C57 C56 SING N N 8 5HV C56 N55 SING N N 9 5HV N69 C70 DOUB N N 10 5HV N55 C70 SING N N 11 5HV N55 C52 SING N N 12 5HV C70 S71 SING N N 13 5HV C12 C09 SING N N 14 5HV O51 C50 DOUB N N 15 5HV C72 S71 SING N N 16 5HV C72 C75 SING N N 17 5HV C52 C50 SING N N 18 5HV C50 N22 SING N N 19 5HV C09 N08 SING N N 20 5HV C75 C84 DOUB Y N 21 5HV C75 C76 SING Y N 22 5HV C84 C82 SING Y N 23 5HV C16 N08 SING N N 24 5HV C16 C19 SING N N 25 5HV N22 C19 SING N N 26 5HV N22 C23 SING N N 27 5HV N08 C05 SING N N 28 5HV C76 C78 DOUB Y N 29 5HV C82 C80 DOUB Y N 30 5HV C05 C01 SING N N 31 5HV C23 C26 SING N N 32 5HV C78 C80 SING Y N 33 5HV C80 F81 SING N N 34 5HV C34 C26 DOUB Y N 35 5HV C34 C32 SING Y N 36 5HV C26 C27 SING Y N 37 5HV C32 C31 DOUB Y N 38 5HV C27 C29 DOUB Y N 39 5HV C31 C29 SING Y N 40 5HV C31 C36 SING N N 41 5HV C44 C36 DOUB Y N 42 5HV C44 C42 SING Y N 43 5HV C36 C37 SING Y N 44 5HV C42 C41 DOUB Y N 45 5HV C37 C39 DOUB Y N 46 5HV C41 C39 SING Y N 47 5HV C41 C46 SING N N 48 5HV F48 C46 SING N N 49 5HV C46 F47 SING N N 50 5HV C46 F49 SING N N 51 5HV C01 H1 SING N N 52 5HV C01 H2 SING N N 53 5HV C01 H3 SING N N 54 5HV C05 H4 SING N N 55 5HV C05 H5 SING N N 56 5HV C09 H7 SING N N 57 5HV C09 H8 SING N N 58 5HV C12 H9 SING N N 59 5HV C12 H10 SING N N 60 5HV C12 H11 SING N N 61 5HV C16 H12 SING N N 62 5HV C16 H13 SING N N 63 5HV C19 H14 SING N N 64 5HV C19 H15 SING N N 65 5HV C23 H16 SING N N 66 5HV C23 H17 SING N N 67 5HV C27 H18 SING N N 68 5HV C29 H19 SING N N 69 5HV C32 H20 SING N N 70 5HV C34 H21 SING N N 71 5HV C37 H22 SING N N 72 5HV C39 H23 SING N N 73 5HV C42 H24 SING N N 74 5HV C44 H25 SING N N 75 5HV C52 H26 SING N N 76 5HV C52 H27 SING N N 77 5HV C57 H28 SING N N 78 5HV C57 H29 SING N N 79 5HV C60 H30 SING N N 80 5HV C60 H31 SING N N 81 5HV C63 H32 SING N N 82 5HV C63 H33 SING N N 83 5HV C72 H34 SING N N 84 5HV C72 H35 SING N N 85 5HV C76 H36 SING N N 86 5HV C78 H37 SING N N 87 5HV C82 H38 SING N N 88 5HV C84 H39 SING N N 89 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5HV SMILES ACDLabs 12.01 "CCN(CC)CCN(Cc2ccc(c1ccc(C(F)(F)F)cc1)cc2)C(=O)CN3C(=NC(C4=C3CCC4)=O)SCc5ccc(cc5)F" 5HV InChI InChI 1.03 "InChI=1S/C36H38F4N4O2S/c1-3-42(4-2)20-21-43(22-25-8-12-27(13-9-25)28-14-16-29(17-15-28)36(38,39)40)33(45)23-44-32-7-5-6-31(32)34(46)41-35(44)47-24-26-10-18-30(37)19-11-26/h8-19H,3-7,20-24H2,1-2H3" 5HV InChIKey InChI 1.03 WDPFJWLDPVQCAJ-UHFFFAOYSA-N 5HV SMILES_CANONICAL CACTVS 3.385 "CCN(CC)CCN(Cc1ccc(cc1)c2ccc(cc2)C(F)(F)F)C(=O)CN3C4=C(CCC4)C(=O)N=C3SCc5ccc(F)cc5" 5HV SMILES CACTVS 3.385 "CCN(CC)CCN(Cc1ccc(cc1)c2ccc(cc2)C(F)(F)F)C(=O)CN3C4=C(CCC4)C(=O)N=C3SCc5ccc(F)cc5" 5HV SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCN(CC)CCN(Cc1ccc(cc1)c2ccc(cc2)C(F)(F)F)C(=O)CN3C4=C(CCC4)C(=O)N=C3SCc5ccc(cc5)F" 5HV SMILES "OpenEye OEToolkits" 1.9.2 "CCN(CC)CCN(Cc1ccc(cc1)c2ccc(cc2)C(F)(F)F)C(=O)CN3C4=C(CCC4)C(=O)N=C3SCc5ccc(cc5)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5HV "SYSTEMATIC NAME" ACDLabs 12.01 "N-[2-(diethylamino)ethyl]-2-{2-[(4-fluorobenzyl)sulfanyl]-4-oxo-4,5,6,7-tetrahydro-1H-cyclopenta[d]pyrimidin-1-yl}-N-{[4'-(trifluoromethyl)biphenyl-4-yl]methyl}acetamide" 5HV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[2-(diethylamino)ethyl]-2-[2-[(4-fluorophenyl)methylsulfanyl]-4-oxidanylidene-6,7-dihydro-5H-cyclopenta[d]pyrimidin-1-yl]-N-[[4-[4-(trifluoromethyl)phenyl]phenyl]methyl]ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5HV "Create component" 2015-09-28 RCSB 5HV "Initial release" 2016-06-15 RCSB 5HV "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5HV _pdbx_chem_comp_synonyms.name Darapladib _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##