data_5I7
#
_chem_comp.id 5I7
_chem_comp.name "(phenylmethyl) ~{N}-[(2~{S})-6-[[(2~{R},3~{a}~{R},5~{R},6~{R},6~{a}~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-6-oxidanyl-2-tridecyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-2-yl]amino]-1-oxidanylidene-1-[2-(triethyl-$l^{4}-azanyl)ethylamino]hexan-2-yl]carbamate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C51 H86 N9 O16 P2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2021-07-20
_chem_comp.pdbx_modified_date 2024-08-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 1175.292
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5I7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7RIF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5I7 C02 C1 C 0 1 N N R N N N 23.998 -4.033 41.479 4.067 4.316 -0.271 C02 5I7 1
5I7 C03 C2 C 0 1 N N R N N N 24.751 -2.739 41.851 2.610 3.846 -0.462 C03 5I7 2
5I7 C04 C3 C 0 1 N N N N N N 24.712 -2.493 43.393 1.651 5.006 -0.190 C04 5I7 3
5I7 C11 C4 C 0 1 N N N N N N 25.798 -6.942 48.616 -5.982 3.853 -1.667 C11 5I7 4
5I7 C12 C5 C 0 1 N N R N N N 25.713 -6.709 50.150 -6.433 2.460 -2.110 C12 5I7 5
5I7 C13 C6 C 0 1 N N S N N N 27.125 -6.585 50.730 -7.836 2.529 -2.753 C13 5I7 6
5I7 C15 C7 C 0 1 N N R N N N 27.268 -8.012 51.337 -8.529 1.230 -2.282 C15 5I7 7
5I7 C17 C8 C 0 1 N N R N N N 25.787 -8.307 51.832 -7.463 0.531 -1.410 C17 5I7 8
5I7 C19 C9 C 0 1 Y N N N N N 24.477 -10.357 52.865 -8.648 -1.381 -0.250 C19 5I7 9
5I7 C21 C10 C 0 1 Y N N N N N 23.271 -10.862 54.675 -9.390 -3.480 -0.822 C21 5I7 10
5I7 C23 C11 C 0 1 Y N N N N N 23.498 -12.619 53.157 -9.739 -2.809 1.358 C23 5I7 11
5I7 C25 C12 C 0 1 Y N N N N N 24.265 -11.720 52.383 -9.119 -1.584 1.059 C25 5I7 12
5I7 C27 C13 C 0 1 Y N N N N N 25.472 -10.669 50.910 -8.236 0.396 0.989 C27 5I7 13
5I7 C33 C14 C 0 1 N N R N N N 26.097 -3.802 40.353 3.701 3.588 -2.525 C33 5I7 14
5I7 C35 C15 C 0 1 N N R N N N 24.630 -4.203 40.067 4.811 3.583 -1.421 C35 5I7 15
5I7 C37 C16 C 0 1 N N R N N N 25.072 -3.140 38.017 5.141 1.310 -2.114 C37 5I7 16
5I7 C38 C17 C 0 1 N N N N N N 25.076 -4.345 36.978 6.598 1.195 -2.566 C38 5I7 17
5I7 C39 C18 C 0 1 N N N N N N 23.652 -4.676 36.429 7.440 0.616 -1.427 C39 5I7 18
5I7 C40 C19 C 0 1 N N N N N N 23.471 -5.788 35.358 8.910 0.578 -1.849 C40 5I7 19
5I7 C41 C20 C 0 1 N N N N N N 24.534 -6.931 35.345 9.753 -0.000 -0.711 C41 5I7 20
5I7 C42 C21 C 0 1 N N N N N N 24.056 -8.390 35.076 11.223 -0.038 -1.132 C42 5I7 21
5I7 C43 C22 C 0 1 N N N N N N 24.777 -9.483 35.919 12.066 -0.617 0.006 C43 5I7 22
5I7 C44 C23 C 0 1 N N N N N N 24.384 -10.964 35.680 13.536 -0.654 -0.416 C44 5I7 23
5I7 C45 C24 C 0 1 N N N N N N 24.534 -11.905 36.922 14.378 -1.233 0.723 C45 5I7 24
5I7 C46 C25 C 0 1 N N N N N N 23.436 -11.755 38.016 15.849 -1.271 0.301 C46 5I7 25
5I7 C47 C26 C 0 1 N N N N N N 22.678 -13.053 38.460 16.691 -1.849 1.440 C47 5I7 26
5I7 C48 C27 C 0 1 N N N N N N 21.162 -13.095 38.101 18.161 -1.887 1.018 C48 5I7 27
5I7 C49 C28 C 0 1 N N N N N N 20.649 -14.301 37.262 19.004 -2.466 2.156 C49 5I7 28
5I7 C50 C29 C 0 1 N N N N N N 19.193 -14.736 37.520 20.474 -2.503 1.735 C50 5I7 29
5I7 C52 C30 C 0 1 N N N N N N 24.883 -0.650 38.293 3.227 0.096 -1.261 C52 5I7 30
5I7 C53 C31 C 0 1 N N N N N N 24.027 0.572 37.823 2.715 -1.293 -0.877 C53 5I7 31
5I7 C54 C32 C 0 1 N N N N N N 24.809 1.910 37.722 1.271 -1.185 -0.382 C54 5I7 32
5I7 C55 C33 C 0 1 N N N N N N 24.200 2.970 36.743 0.758 -2.575 0.002 C55 5I7 33
5I7 C56 C34 C 0 1 N N S N N N 24.338 4.502 37.157 -0.686 -2.467 0.496 C56 5I7 34
5I7 C58 C35 C 0 1 N N N N N N 23.858 6.828 36.189 -1.845 -1.033 2.089 C58 5I7 35
5I7 C60 C36 C 0 1 N N N N N N 23.565 8.971 34.955 -3.122 0.362 3.545 C60 5I7 36
5I7 C61 C37 C 0 1 Y N N N N N 23.162 9.585 33.589 -2.970 1.110 4.844 C61 5I7 37
5I7 C62 C38 C 0 1 Y N N N N N 22.343 10.733 33.510 -2.528 2.420 4.840 C62 5I7 38
5I7 C63 C39 C 0 1 Y N N N N N 21.963 11.307 32.293 -2.388 3.105 6.032 C63 5I7 39
5I7 C64 C40 C 0 1 Y N N N N N 22.387 10.759 31.082 -2.690 2.481 7.228 C64 5I7 40
5I7 C65 C41 C 0 1 Y N N N N N 23.191 9.629 31.143 -3.132 1.172 7.232 C65 5I7 41
5I7 C66 C42 C 0 1 Y N N N N N 23.566 9.061 32.366 -3.278 0.488 6.040 C66 5I7 42
5I7 C68 C43 C 0 1 N N N N N N 25.866 4.846 37.218 -1.232 -3.847 0.758 C68 5I7 43
5I7 C70 C44 C 0 1 N N N N N N 27.924 5.426 38.575 -1.828 -6.088 0.011 C70 5I7 44
5I7 C71 C45 C 0 1 N N N N N N 27.980 6.998 38.697 -1.792 -6.905 -1.283 C71 5I7 45
5I7 C73 C46 C 0 1 N N N N N N 28.756 9.061 37.430 -3.710 -8.146 -0.553 C73 5I7 46
5I7 C74 C47 C 0 1 N N N N N N 29.459 10.283 38.003 -4.563 -7.454 -1.617 C74 5I7 47
5I7 C75 C48 C 0 1 N N N N N N 30.326 7.926 39.085 -2.289 -9.034 -2.270 C75 5I7 48
5I7 C76 C49 C 0 1 N N N N N N 29.878 7.811 40.546 -2.843 -10.435 -2.004 C76 5I7 49
5I7 C77 C50 C 0 1 N N N N N N 29.731 6.870 36.847 -1.505 -8.915 -0.006 C77 5I7 50
5I7 C78 C51 C 0 1 N N N N N N 28.933 7.015 35.557 -0.061 -9.023 -0.500 C78 5I7 51
5I7 N18 N1 N 0 1 Y N N N N N 25.263 -9.708 51.919 -8.094 -0.126 -0.262 N18 5I7 52
5I7 N20 N2 N 0 1 Y N N N N N 23.980 -9.899 54.035 -8.804 -2.348 -1.149 N20 5I7 53
5I7 N22 N3 N 0 1 Y N N N N N 23.000 -12.153 54.341 -9.849 -3.715 0.393 N22 5I7 54
5I7 N24 N4 N 0 1 N N N N N N 23.189 -13.951 52.846 -10.222 -3.065 2.629 N24 5I7 55
5I7 N26 N5 N 0 1 Y N N N N N 24.906 -11.866 51.149 -8.837 -0.461 1.762 N26 5I7 56
5I7 N51 N6 N 0 1 N N N N N N 24.779 -1.831 37.382 4.614 -0.008 -1.736 N51 5I7 57
5I7 N57 N7 N 0 1 N N N N N N 23.673 5.427 36.200 -0.721 -1.685 1.735 N57 5I7 58
5I7 N69 N8 N 0 1 N N N N N N 26.510 5.071 38.480 -1.297 -4.747 -0.243 N69 5I7 59
5I7 N72 N9 N 1 1 N N N N N N 29.201 7.709 38.036 -2.324 -8.250 -1.028 N72 5I7 60
5I7 O01 O1 O 0 1 N N N N N N 22.616 -3.809 41.413 4.569 3.908 1.004 O01 5I7 61
5I7 O05 O2 O 0 1 N N N N N N 25.201 -3.579 44.053 0.303 4.535 -0.255 O05 5I7 62
5I7 O07 O3 O 0 1 N N N N N N 25.534 -5.659 45.687 -2.323 4.659 -0.295 O07 5I7 63
5I7 O09 O4 O 0 1 N N N N N N 27.542 -7.370 46.316 -4.558 5.619 0.702 O09 5I7 64
5I7 O10 O5 O 0 1 N N N N N N 26.527 -5.947 48.014 -4.639 3.787 -1.182 O10 5I7 65
5I7 O14 O6 O 0 1 N N N N N N 27.172 -5.611 51.743 -7.733 2.552 -4.178 O14 5I7 66
5I7 O16 O7 O 0 1 N N N N N N 28.076 -7.996 52.474 -8.875 0.412 -3.401 O16 5I7 67
5I7 O28 O8 O 0 1 N N N N N N 25.024 -7.732 50.824 -6.595 1.596 -0.964 O28 5I7 68
5I7 O29 O9 O 0 1 N N N N N N 27.808 -4.774 46.114 -3.846 6.135 -1.664 O29 5I7 69
5I7 O30 O10 O 0 1 N N N N N N 23.157 -4.971 45.084 -0.903 6.642 -0.944 O30 5I7 70
5I7 O31 O11 O 0 1 N N N N N N 24.524 -3.399 46.467 -0.970 6.020 1.501 O31 5I7 71
5I7 O32 O12 O 0 1 N N N N N N 26.084 -2.925 41.434 2.471 3.408 -1.819 O32 5I7 72
5I7 O36 O13 O 0 1 N N N N N N 24.131 -3.382 39.025 5.030 2.229 -1.015 O36 5I7 73
5I7 O59 O14 O 0 1 N N N N N N 23.414 7.529 35.062 -1.877 -0.314 3.227 O59 5I7 74
5I7 O67 O15 O 0 1 N N N N N N 24.387 7.422 37.113 -2.831 -1.092 1.380 O67 5I7 75
5I7 O79 O16 O 0 1 N N N N N N 26.523 4.935 36.199 -1.612 -4.148 1.869 O79 5I7 76
5I7 P06 P1 P 0 1 N N N N N N 24.508 -4.426 45.396 -0.972 5.489 -0.019 P06 5I7 77
5I7 P08 P2 P 0 1 N N N N N N 27.032 -5.948 46.321 -3.842 5.073 -0.632 P08 5I7 78
5I7 S34 S1 S 0 1 N N N N N N 26.755 -2.991 38.841 4.102 2.062 -3.460 S34 5I7 79
5I7 H1 H1 H 0 1 N N N N N N 24.279 -4.864 42.142 4.144 5.397 -0.388 H1 5I7 80
5I7 H2 H2 H 0 1 N N N N N N 24.286 -1.885 41.337 2.395 3.021 0.218 H2 5I7 81
5I7 H3 H3 H 0 1 N N N N N N 25.325 -1.613 43.637 1.846 5.414 0.802 H3 5I7 82
5I7 H4 H4 H 0 1 N N N N N N 23.673 -2.314 43.707 1.800 5.784 -0.939 H4 5I7 83
5I7 H5 H5 H 0 1 N N N N N N 24.782 -6.950 48.195 -6.030 4.537 -2.514 H5 5I7 84
5I7 H6 H6 H 0 1 N N N N N N 26.282 -7.911 48.424 -6.637 4.213 -0.873 H6 5I7 85
5I7 H7 H7 H 0 1 N N N N N N 25.197 -5.751 50.312 -5.715 2.034 -2.810 H7 5I7 86
5I7 H8 H8 H 0 1 N N N N N N 27.868 -6.421 49.936 -8.379 3.403 -2.394 H8 5I7 87
5I7 H9 H9 H 0 1 N N N N N N 27.581 -8.742 50.576 -9.414 1.463 -1.689 H9 5I7 88
5I7 H10 H10 H 0 1 N N N N N N 25.632 -7.794 52.792 -6.904 -0.194 -2.001 H10 5I7 89
5I7 H11 H11 H 0 1 N N N N N N 22.846 -10.548 55.617 -9.501 -4.244 -1.577 H11 5I7 90
5I7 H12 H12 H 0 1 N N N N N N 26.041 -10.461 50.016 -7.899 1.376 1.293 H12 5I7 91
5I7 H13 H13 H 0 1 N N N N N N 26.712 -4.696 40.535 3.711 4.485 -3.144 H13 5I7 92
5I7 H14 H14 H 0 1 N N N N N N 24.595 -5.265 39.783 5.723 4.093 -1.731 H14 5I7 93
5I7 H15 H15 H 0 1 N N N N N N 25.476 -5.239 37.478 6.658 0.537 -3.433 H15 5I7 94
5I7 H16 H16 H 0 1 N N N N N N 25.725 -4.077 36.132 6.975 2.182 -2.832 H16 5I7 95
5I7 H17 H17 H 0 1 N N N N N N 23.256 -3.747 35.992 7.332 1.242 -0.541 H17 5I7 96
5I7 H18 H18 H 0 1 N N N N N N 23.037 -4.965 37.294 7.101 -0.395 -1.201 H18 5I7 97
5I7 H19 H19 H 0 1 N N N N N N 23.489 -5.305 34.370 9.018 -0.048 -2.735 H19 5I7 98
5I7 H20 H20 H 0 1 N N N N N N 22.487 -6.251 35.522 9.250 1.589 -2.075 H20 5I7 99
5I7 H21 H21 H 0 1 N N N N N N 25.027 -6.927 36.329 9.645 0.626 0.175 H21 5I7 100
5I7 H22 H22 H 0 1 N N N N N N 25.269 -6.682 34.566 9.414 -1.011 -0.485 H22 5I7 101
5I7 H23 H23 H 0 1 N N N N N N 22.980 -8.443 35.297 11.331 -0.664 -2.018 H23 5I7 102
5I7 H24 H24 H 0 1 N N N N N N 24.223 -8.614 34.012 11.563 0.973 -1.358 H24 5I7 103
5I7 H25 H25 H 0 1 N N N N N N 25.855 -9.394 35.717 11.958 0.009 0.892 H25 5I7 104
5I7 H26 H26 H 0 1 N N N N N N 24.583 -9.260 36.978 11.726 -1.627 0.232 H26 5I7 105
5I7 H27 H27 H 0 1 N N N N N N 23.332 -10.989 35.360 13.644 -1.280 -1.302 H27 5I7 106
5I7 H28 H28 H 0 1 N N N N N N 25.022 -11.359 34.875 13.875 0.356 -0.641 H28 5I7 107
5I7 H29 H29 H 0 1 N N N N N N 24.515 -12.945 36.563 14.271 -0.607 1.609 H29 5I7 108
5I7 H30 H30 H 0 1 N N N N N N 25.508 -11.696 37.389 14.039 -2.244 0.949 H30 5I7 109
5I7 H31 H31 H 0 1 N N N N N N 23.917 -11.332 38.910 15.957 -1.896 -0.585 H31 5I7 110
5I7 H32 H32 H 0 1 N N N N N N 22.684 -11.048 37.634 16.188 -0.260 0.075 H32 5I7 111
5I7 H33 H33 H 0 1 N N N N N N 23.165 -13.913 37.977 16.583 -1.223 2.326 H33 5I7 112
5I7 H34 H34 H 0 1 N N N N N N 22.771 -13.144 39.552 16.352 -2.860 1.666 H34 5I7 113
5I7 H35 H35 H 0 1 N N N N N N 20.933 -12.180 37.535 18.269 -2.513 0.132 H35 5I7 114
5I7 H36 H36 H 0 1 N N N N N N 20.600 -13.091 39.047 18.501 -0.876 0.792 H36 5I7 115
5I7 H37 H37 H 0 1 N N N N N N 21.300 -15.161 37.477 18.896 -1.840 3.042 H37 5I7 116
5I7 H38 H38 H 0 1 N N N N N N 20.736 -14.032 36.199 18.665 -3.476 2.382 H38 5I7 117
5I7 H39 H39 H 0 1 N N N N N N 18.945 -15.591 36.874 20.582 -3.129 0.849 H39 5I7 118
5I7 H40 H40 H 0 1 N N N N N N 19.079 -15.028 38.574 20.814 -1.492 1.509 H40 5I7 119
5I7 H41 H41 H 0 1 N N N N N N 18.515 -13.899 37.296 21.074 -2.915 2.546 H41 5I7 120
5I7 H42 H42 H 0 1 N N N N N N 24.542 -0.951 39.295 2.602 0.508 -2.053 H42 5I7 121
5I7 H43 H43 H 0 1 N N N N N N 25.937 -0.339 38.343 3.190 0.751 -0.390 H43 5I7 122
5I7 H44 H44 H 0 1 N N N N N N 23.203 0.709 38.539 2.752 -1.948 -1.748 H44 5I7 123
5I7 H45 H45 H 0 1 N N N N N N 23.615 0.340 36.830 3.340 -1.706 -0.085 H45 5I7 124
5I7 H46 H46 H 0 1 N N N N N N 25.830 1.682 37.383 1.233 -0.531 0.488 H46 5I7 125
5I7 H47 H47 H 0 1 N N N N N N 24.847 2.358 38.726 0.645 -0.773 -1.174 H47 5I7 126
5I7 H48 H48 H 0 1 N N N N N N 23.127 2.749 36.641 0.796 -3.229 -0.869 H48 5I7 127
5I7 H49 H49 H 0 1 N N N N N N 24.694 2.844 35.769 1.383 -2.987 0.793 H49 5I7 128
5I7 H50 H50 H 0 1 N N N N N N 23.906 4.631 38.161 -1.294 -1.973 -0.262 H50 5I7 129
5I7 H51 H51 H 0 1 N N N N N N 24.622 9.216 35.138 -3.921 -0.373 3.640 H51 5I7 130
5I7 H52 H52 H 0 1 N N N N N N 22.941 9.436 35.733 -3.368 1.065 2.748 H52 5I7 131
5I7 H53 H53 H 0 1 N N N N N N 21.996 11.186 34.427 -2.292 2.907 3.906 H53 5I7 132
5I7 H54 H54 H 0 1 N N N N N N 21.334 12.185 32.290 -2.042 4.129 6.030 H54 5I7 133
5I7 H55 H55 H 0 1 N N N N N N 22.102 11.196 30.136 -2.576 3.016 8.160 H55 5I7 134
5I7 H56 H56 H 0 1 N N N N N N 23.535 9.177 30.225 -3.368 0.684 8.167 H56 5I7 135
5I7 H57 H57 H 0 1 N N N N N N 24.193 8.182 32.360 -3.624 -0.535 6.043 H57 5I7 136
5I7 H58 H58 H 0 1 N N N N N N 28.375 4.959 39.463 -2.856 -6.011 0.363 H58 5I7 137
5I7 H59 H59 H 0 1 N N N N N N 28.461 5.095 37.674 -1.220 -6.582 0.769 H59 5I7 138
5I7 H60 H60 H 0 1 N N N N N N 27.988 7.249 39.768 -2.399 -6.411 -2.041 H60 5I7 139
5I7 H61 H61 H 0 1 N N N N N N 27.068 7.401 38.232 -0.763 -6.982 -1.635 H61 5I7 140
5I7 H62 H62 H 0 1 N N N N N N 27.676 9.175 37.605 -3.736 -7.565 0.369 H62 5I7 141
5I7 H63 H63 H 0 1 N N N N N N 28.951 9.031 36.348 -4.105 -9.144 -0.363 H63 5I7 142
5I7 H64 H64 H 0 1 N N N N N N 29.077 11.190 37.512 -4.537 -8.035 -2.539 H64 5I7 143
5I7 H65 H65 H 0 1 N N N N N N 29.267 10.343 39.084 -5.592 -7.377 -1.265 H65 5I7 144
5I7 H66 H66 H 0 1 N N N N N N 30.542 10.199 37.827 -4.168 -6.455 -1.806 H66 5I7 145
5I7 H67 H67 H 0 1 N N N N N N 31.108 7.173 38.907 -1.260 -9.111 -2.622 H67 5I7 146
5I7 H68 H68 H 0 1 N N N N N N 30.744 8.932 38.934 -2.897 -8.540 -3.028 H68 5I7 147
5I7 H69 H69 H 0 1 N N N N N N 30.740 7.979 41.209 -2.235 -10.929 -1.246 H69 5I7 148
5I7 H70 H70 H 0 1 N N N N N N 29.104 8.565 40.752 -3.872 -10.358 -1.651 H70 5I7 149
5I7 H71 H71 H 0 1 N N N N N N 29.468 6.806 40.726 -2.818 -11.017 -2.925 H71 5I7 150
5I7 H72 H72 H 0 1 N N N N N N 29.715 5.810 37.142 -1.899 -9.913 0.184 H72 5I7 151
5I7 H73 H73 H 0 1 N N N N N N 30.767 7.179 36.645 -1.530 -8.333 0.916 H73 5I7 152
5I7 H74 H74 H 0 1 N N N N N N 29.382 6.386 34.775 0.334 -8.025 -0.689 H74 5I7 153
5I7 H75 H75 H 0 1 N N N N N N 27.894 6.698 35.731 0.547 -9.517 0.258 H75 5I7 154
5I7 H76 H76 H 0 1 N N N N N N 28.946 8.066 35.234 -0.035 -9.605 -1.422 H76 5I7 155
5I7 H77 H77 H 0 1 N N N N N N 22.633 -14.344 53.578 -10.648 -3.915 2.824 H77 5I7 156
5I7 H78 H78 H 0 1 N N N N N N 22.679 -13.983 51.987 -10.136 -2.395 3.326 H78 5I7 157
5I7 H79 H79 H 0 1 N N N N N N 25.424 -1.700 36.629 4.685 -0.659 -2.503 H79 5I7 158
5I7 H81 H81 H 0 1 N N N N N N 23.055 5.032 35.520 0.066 -1.637 2.300 H81 5I7 159
5I7 H82 H82 H 0 1 N N N N N N 25.975 4.982 39.320 -0.993 -4.506 -1.132 H82 5I7 160
5I7 H83 H83 H 0 1 N N N N N N 22.268 -3.711 42.292 4.082 4.276 1.754 H83 5I7 161
5I7 H84 H84 H 0 1 N N N N N N 28.478 -7.371 46.151 -4.591 4.974 1.422 H84 5I7 162
5I7 H85 H85 H 0 1 N N N N N N 28.056 -5.553 52.086 -8.585 2.595 -4.633 H85 5I7 163
5I7 H86 H86 H 0 1 N N N N N N 28.147 -8.876 52.825 -9.496 0.828 -4.015 H86 5I7 164
5I7 H87 H87 H 0 1 N N N N N N 23.640 -3.257 46.784 -1.013 5.317 2.164 H87 5I7 165
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5I7 C64 C65 DOUB Y N 1
5I7 C64 C63 SING Y N 2
5I7 C65 C66 SING Y N 3
5I7 C63 C62 DOUB Y N 4
5I7 C66 C61 DOUB Y N 5
5I7 C62 C61 SING Y N 6
5I7 C61 C60 SING N N 7
5I7 C60 O59 SING N N 8
5I7 O59 C58 SING N N 9
5I7 C42 C41 SING N N 10
5I7 C42 C43 SING N N 11
5I7 C41 C40 SING N N 12
5I7 C40 C39 SING N N 13
5I7 C78 C77 SING N N 14
5I7 C44 C43 SING N N 15
5I7 C44 C45 SING N N 16
5I7 C58 N57 SING N N 17
5I7 C58 O67 DOUB N N 18
5I7 O79 C68 DOUB N N 19
5I7 N57 C56 SING N N 20
5I7 C39 C38 SING N N 21
5I7 C55 C56 SING N N 22
5I7 C55 C54 SING N N 23
5I7 C77 N72 SING N N 24
5I7 C45 C46 SING N N 25
5I7 C38 C37 SING N N 26
5I7 C56 C68 SING N N 27
5I7 C68 N69 SING N N 28
5I7 C49 C50 SING N N 29
5I7 C49 C48 SING N N 30
5I7 N51 C37 SING N N 31
5I7 N51 C52 SING N N 32
5I7 C73 C74 SING N N 33
5I7 C73 N72 SING N N 34
5I7 C54 C53 SING N N 35
5I7 C53 C52 SING N N 36
5I7 C46 C47 SING N N 37
5I7 C37 S34 SING N N 38
5I7 C37 O36 SING N N 39
5I7 N72 C71 SING N N 40
5I7 N72 C75 SING N N 41
5I7 C48 C47 SING N N 42
5I7 N69 C70 SING N N 43
5I7 C70 C71 SING N N 44
5I7 S34 C33 SING N N 45
5I7 O36 C35 SING N N 46
5I7 C75 C76 SING N N 47
5I7 C35 C33 SING N N 48
5I7 C35 C02 SING N N 49
5I7 C33 O32 SING N N 50
5I7 O01 C02 SING N N 51
5I7 O32 C03 SING N N 52
5I7 C02 C03 SING N N 53
5I7 C03 C04 SING N N 54
5I7 C04 O05 SING N N 55
5I7 O05 P06 SING N N 56
5I7 O30 P06 DOUB N N 57
5I7 P06 O07 SING N N 58
5I7 P06 O31 SING N N 59
5I7 O07 P08 SING N N 60
5I7 O29 P08 DOUB N N 61
5I7 O09 P08 SING N N 62
5I7 P08 O10 SING N N 63
5I7 O10 C11 SING N N 64
5I7 C11 C12 SING N N 65
5I7 C12 C13 SING N N 66
5I7 C12 O28 SING N N 67
5I7 C13 C15 SING N N 68
5I7 C13 O14 SING N N 69
5I7 O28 C17 SING N N 70
5I7 C27 N26 DOUB Y N 71
5I7 C27 N18 SING Y N 72
5I7 N26 C25 SING Y N 73
5I7 C15 C17 SING N N 74
5I7 C15 O16 SING N N 75
5I7 C17 N18 SING N N 76
5I7 N18 C19 SING Y N 77
5I7 C25 C19 DOUB Y N 78
5I7 C25 C23 SING Y N 79
5I7 N24 C23 SING N N 80
5I7 C19 N20 SING Y N 81
5I7 C23 N22 DOUB Y N 82
5I7 N20 C21 DOUB Y N 83
5I7 N22 C21 SING Y N 84
5I7 C02 H1 SING N N 85
5I7 C03 H2 SING N N 86
5I7 C04 H3 SING N N 87
5I7 C04 H4 SING N N 88
5I7 C11 H5 SING N N 89
5I7 C11 H6 SING N N 90
5I7 C12 H7 SING N N 91
5I7 C13 H8 SING N N 92
5I7 C15 H9 SING N N 93
5I7 C17 H10 SING N N 94
5I7 C21 H11 SING N N 95
5I7 C27 H12 SING N N 96
5I7 C33 H13 SING N N 97
5I7 C35 H14 SING N N 98
5I7 C38 H15 SING N N 99
5I7 C38 H16 SING N N 100
5I7 C39 H17 SING N N 101
5I7 C39 H18 SING N N 102
5I7 C40 H19 SING N N 103
5I7 C40 H20 SING N N 104
5I7 C41 H21 SING N N 105
5I7 C41 H22 SING N N 106
5I7 C42 H23 SING N N 107
5I7 C42 H24 SING N N 108
5I7 C43 H25 SING N N 109
5I7 C43 H26 SING N N 110
5I7 C44 H27 SING N N 111
5I7 C44 H28 SING N N 112
5I7 C45 H29 SING N N 113
5I7 C45 H30 SING N N 114
5I7 C46 H31 SING N N 115
5I7 C46 H32 SING N N 116
5I7 C47 H33 SING N N 117
5I7 C47 H34 SING N N 118
5I7 C48 H35 SING N N 119
5I7 C48 H36 SING N N 120
5I7 C49 H37 SING N N 121
5I7 C49 H38 SING N N 122
5I7 C50 H39 SING N N 123
5I7 C50 H40 SING N N 124
5I7 C50 H41 SING N N 125
5I7 C52 H42 SING N N 126
5I7 C52 H43 SING N N 127
5I7 C53 H44 SING N N 128
5I7 C53 H45 SING N N 129
5I7 C54 H46 SING N N 130
5I7 C54 H47 SING N N 131
5I7 C55 H48 SING N N 132
5I7 C55 H49 SING N N 133
5I7 C56 H50 SING N N 134
5I7 C60 H51 SING N N 135
5I7 C60 H52 SING N N 136
5I7 C62 H53 SING N N 137
5I7 C63 H54 SING N N 138
5I7 C64 H55 SING N N 139
5I7 C65 H56 SING N N 140
5I7 C66 H57 SING N N 141
5I7 C70 H58 SING N N 142
5I7 C70 H59 SING N N 143
5I7 C71 H60 SING N N 144
5I7 C71 H61 SING N N 145
5I7 C73 H62 SING N N 146
5I7 C73 H63 SING N N 147
5I7 C74 H64 SING N N 148
5I7 C74 H65 SING N N 149
5I7 C74 H66 SING N N 150
5I7 C75 H67 SING N N 151
5I7 C75 H68 SING N N 152
5I7 C76 H69 SING N N 153
5I7 C76 H70 SING N N 154
5I7 C76 H71 SING N N 155
5I7 C77 H72 SING N N 156
5I7 C77 H73 SING N N 157
5I7 C78 H74 SING N N 158
5I7 C78 H75 SING N N 159
5I7 C78 H76 SING N N 160
5I7 N24 H77 SING N N 161
5I7 N24 H78 SING N N 162
5I7 N51 H79 SING N N 163
5I7 N57 H81 SING N N 164
5I7 N69 H82 SING N N 165
5I7 O01 H83 SING N N 166
5I7 O09 H84 SING N N 167
5I7 O14 H85 SING N N 168
5I7 O16 H86 SING N N 169
5I7 O31 H87 SING N N 170
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5I7 SMILES ACDLabs 12.01 "CC[N+](CC)(CC)CCNC(=O)C(NC(=O)OCc1ccccc1)CCCCNC1(OC2C(O)C(COP(=O)(O)OP(=O)(O)OCC3OC(n4cnc5c(N)ncnc54)C(O)C3O)OC2S1)CCCCCCCCCCCCC"
5I7 InChI InChI 1.03 "InChI=1S/C51H85N9O16P2S/c1-5-9-10-11-12-13-14-15-16-17-22-27-51(57-28-23-21-26-37(47(64)53-29-30-60(6-2,7-3)8-4)58-50(65)70-31-36-24-19-18-20-25-36)75-44-42(62)39(74-49(44)79-51)33-72-78(68,69)76-77(66,67)71-32-38-41(61)43(63)48(73-38)59-35-56-40-45(52)54-34-55-46(40)59/h18-20,24-25,34-35,37-39,41-44,48-49,57,61-63H,5-17,21-23,26-33H2,1-4H3,(H5-,52,53,54,55,58,64,65,66,67,68,69)/p+1/t37-,38+,39+,41+,42+,43+,44+,48+,49+,51+/m0/s1"
5I7 InChIKey InChI 1.03 DVXJRXQMZVZLQP-OACJPHNQSA-O
5I7 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCC[C@@]1(NCCCC[C@H](NC(=O)OCc2ccccc2)C(=O)NCC[N+](CC)(CC)CC)O[C@@H]3[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)O[C@@H]3S1"
5I7 SMILES CACTVS 3.385 "CCCCCCCCCCCCC[C]1(NCCCC[CH](NC(=O)OCc2ccccc2)C(=O)NCC[N+](CC)(CC)CC)O[CH]3[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)O[CH]3S1"
5I7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCC[C@]1(O[C@@H]2[C@@H]([C@H](O[C@@H]2S1)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)NCCCC[C@@H](C(=O)NCC[N+](CC)(CC)CC)NC(=O)OCc6ccccc6"
5I7 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCC1(OC2C(C(OC2S1)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)NCCCCC(C(=O)NCC[N+](CC)(CC)CC)NC(=O)OCc6ccccc6"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5I7 "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(2S)-6-{[(2R,3aR,5R,6R,6aR)-5-({[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-6-hydroxy-2-tridecyltetrahydro-2H-furo[2,3-d][1,3]oxathiol-2-yl]amino}-2-{[(benzyloxy)carbonyl]amino}hexanoyl]amino}-N,N,N-triethylethan-1-aminium (non-preferred name)"
5I7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(2~{S})-6-[[(2~{R},3~{a}~{R},5~{R},6~{R},6~{a}~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-6-oxidanyl-2-tridecyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-2-yl]amino]-2-(phenylmethoxycarbonylamino)hexanoyl]amino]ethyl-triethyl-azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5I7 "Create component" 2021-07-20 RCSB
5I7 "Initial release" 2024-08-07 RCSB
#