data_5IA
#
_chem_comp.id 5IA
_chem_comp.name "2-{[(2S)-6-[(Z)-(1-{[(2R,3R,4R,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-4-hydroxy-2-sulfanyloxolan-3-yl]oxy}tetradecylidene)amino]-2-{[(benzyloxy)carbonyl]amino}hexanoyl]amino}-N,N,N-triethylethan-1-aminium (non-preferred name)"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C51 H86 N9 O16 P2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2021-07-20
_chem_comp.pdbx_modified_date 2024-08-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 1175.292
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5IA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7RIF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5IA C02 C1 C 0 1 N N R N N N 25.402 16.896 16.150 -0.599 -1.956 0.155 C02 5IA 1
5IA C03 C2 C 0 1 N N R N N N 25.991 15.561 15.573 0.905 -1.607 0.102 C03 5IA 2
5IA C04 C3 C 0 1 N N N N N N 25.689 15.476 14.040 1.429 -1.724 -1.331 C04 5IA 3
5IA C11 C4 C 0 1 N N N N N N 27.187 19.510 8.828 9.155 -0.562 -2.878 C11 5IA 4
5IA C12 C5 C 0 1 N N R N N N 27.097 19.267 7.235 10.020 0.250 -1.911 C12 5IA 5
5IA C13 C6 C 0 1 N N S N N N 28.526 19.185 6.546 11.441 0.437 -2.488 C13 5IA 6
5IA C15 C7 C 0 1 N N R N N N 28.864 20.653 6.009 12.364 0.339 -1.253 C15 5IA 7
5IA C17 C8 C 0 1 N N R N N N 27.433 21.016 5.655 11.392 0.103 -0.075 C17 5IA 8
5IA C19 C9 C 0 1 Y N N N N N 26.583 23.221 4.690 12.833 -0.497 1.917 C19 5IA 9
5IA C21 C10 C 0 1 Y N N N N N 25.478 23.702 2.763 14.179 0.626 3.404 C21 5IA 10
5IA C23 C11 C 0 1 Y N N N N N 25.922 25.571 4.197 13.996 -1.659 3.681 C23 5IA 11
5IA C25 C12 C 0 1 Y N N N N N 26.557 24.597 5.090 13.130 -1.702 2.575 C25 5IA 12
5IA C27 C13 C 0 1 Y N N N N N 27.611 23.450 6.697 11.778 -2.172 0.945 C27 5IA 13
5IA C33 C14 C 0 1 N N R N N N 27.545 16.445 16.981 0.047 -0.146 1.651 C33 5IA 14
5IA C35 C15 C 0 1 N N R N N N 26.161 17.022 17.490 -1.177 -0.972 1.197 C35 5IA 15
5IA C37 C16 C 0 1 N N N N N N 25.754 16.222 19.794 -2.985 -2.174 2.146 C37 5IA 16
5IA C38 C17 C 0 1 N N N N N N 26.224 17.426 20.716 -3.196 -3.654 1.956 C38 5IA 17
5IA C39 C18 C 0 1 N N N N N N 25.070 18.389 21.216 -4.692 -3.940 1.804 C39 5IA 18
5IA C40 C19 C 0 1 N N N N N N 25.369 19.913 20.952 -4.906 -5.443 1.612 C40 5IA 19
5IA C41 C20 C 0 1 N N N N N N 25.953 20.747 22.156 -6.402 -5.729 1.460 C41 5IA 20
5IA C42 C21 C 0 1 N N N N N N 26.778 22.053 21.743 -6.616 -7.232 1.267 C42 5IA 21
5IA C43 C22 C 0 1 N N N N N N 26.617 23.329 22.674 -8.111 -7.518 1.115 C43 5IA 22
5IA C44 C23 C 0 1 N N N N N N 26.807 24.711 21.938 -8.326 -9.020 0.923 C44 5IA 23
5IA C45 C24 C 0 1 N N N N N N 25.496 25.347 21.265 -9.822 -9.307 0.771 C45 5IA 24
5IA C46 C25 C 0 1 N N N N N N 25.541 25.539 19.687 -10.036 -10.809 0.578 C46 5IA 25
5IA C47 C26 C 0 1 N N N N N N 24.178 25.270 18.898 -11.532 -11.095 0.427 C47 5IA 26
5IA C48 C27 C 0 1 N N N N N N 23.090 26.420 18.916 -11.746 -12.598 0.234 C48 5IA 27
5IA C49 C28 C 0 1 N N N N N N 22.281 26.668 20.249 -13.242 -12.884 0.082 C49 5IA 28
5IA C50 C29 C 0 1 N N N N N N 22.347 28.145 20.726 -13.456 -14.387 -0.111 C50 5IA 29
5IA C52 C30 C 0 1 N N N N N N 25.387 13.758 19.465 -3.785 0.075 2.196 C52 5IA 30
5IA C53 C31 C 0 1 N N N N N N 25.657 12.381 20.206 -4.718 0.752 1.190 C53 5IA 31
5IA C54 C32 C 0 1 N N N N N N 25.045 11.092 19.470 -4.497 2.266 1.228 C54 5IA 32
5IA C55 C33 C 0 1 N N N N N N 24.220 10.125 20.444 -5.430 2.943 0.222 C55 5IA 33
5IA C56 C34 C 0 1 N N S N N N 24.167 8.586 19.982 -5.208 4.456 0.260 C56 5IA 34
5IA C58 C35 C 0 1 N N N N N N 23.335 6.339 21.054 -5.070 6.120 2.034 C58 5IA 35
5IA C60 C36 C 0 1 N N N N N N 22.759 4.144 22.179 -4.817 7.836 3.674 C60 5IA 36
5IA C61 C37 C 0 1 Y N N N N N 22.495 3.536 23.656 -5.347 8.212 5.034 C61 5IA 37
5IA C62 C38 C 0 1 Y N N N N N 21.747 2.339 23.814 -4.709 7.761 6.174 C62 5IA 38
5IA C63 C39 C 0 1 Y N N N N N 21.501 1.791 25.111 -5.196 8.106 7.421 C63 5IA 39
5IA C64 C40 C 0 1 Y N N N N N 22.008 2.431 26.273 -6.320 8.903 7.528 C64 5IA 40
5IA C65 C41 C 0 1 Y N N N N N 22.760 3.628 26.147 -6.958 9.354 6.387 C65 5IA 41
5IA C66 C42 C 0 1 Y N N N N N 22.995 4.158 24.847 -6.469 9.013 5.140 C66 5IA 42
5IA C68 C43 C 0 1 N N N N N N 25.657 7.947 19.903 -6.037 5.112 -0.815 C68 5IA 43
5IA C70 C44 C 0 1 N N N N N N 27.552 6.731 18.558 -6.647 5.424 -3.153 C70 5IA 44
5IA C71 C45 C 0 1 N N N N N N 27.486 5.125 18.761 -6.229 4.882 -4.522 C71 5IA 45
5IA C73 C46 C 0 1 N N N N N N 29.892 4.518 18.039 -8.457 5.228 -5.339 C73 5IA 46
5IA C74 C47 C 0 1 N N N N N N 29.217 4.036 16.711 -8.679 3.715 -5.378 C74 5IA 47
5IA C75 C48 C 0 1 N N N N N N 29.449 5.327 20.434 -6.824 6.975 -5.533 C75 5IA 48
5IA C76 C49 C 0 1 N N N N N N 28.711 5.097 21.783 -5.344 7.280 -5.772 C76 5IA 49
5IA C77 C50 C 0 1 N N N N N N 28.654 2.923 19.664 -6.635 5.001 -6.883 C77 5IA 50
5IA C78 C51 C 0 1 N N N N N N 30.026 2.141 19.844 -7.476 5.667 -7.974 C78 5IA 51
5IA N18 N1 N 0 1 Y N N N N N 27.248 22.495 5.679 11.980 -0.825 0.894 N18 5IA 52
5IA N20 N2 N 0 1 Y N N N N N 26.041 22.744 3.521 13.375 0.632 2.361 N20 5IA 53
5IA N22 N3 N 0 1 Y N N N N N 25.390 25.072 3.031 14.486 -0.481 4.055 N22 5IA 54
5IA N24 N4 N 0 1 N N N N N N 25.826 26.962 4.455 14.324 -2.814 4.369 N24 5IA 55
5IA N26 N5 N 0 1 Y N N N N N 27.213 24.687 6.347 12.454 -2.685 1.933 N26 5IA 56
5IA N51 N6 N 0 1 N N N N N N 25.809 14.973 20.296 -3.997 -1.374 2.159 N51 5IA 57
5IA N57 N7 N 0 1 N N N N N N 23.351 7.804 21.002 -5.609 4.975 1.570 N57 5IA 58
5IA N69 N8 N 0 1 N N N N N N 26.186 7.359 18.639 -5.842 4.787 -2.109 N69 5IA 59
5IA N72 N9 N 1 1 N N N N N N 28.870 4.461 19.239 -7.036 5.521 -5.569 N72 5IA 60
5IA O01 O1 O 0 1 N N N N N N 24.053 16.931 16.445 -0.785 -3.306 0.583 O01 5IA 61
5IA O05 O2 O 0 1 N N N N N N 26.437 16.407 13.389 2.829 -1.439 -1.350 O05 5IA 62
5IA O07 O3 O 0 1 N N N N N N 26.747 18.623 11.689 5.260 -1.230 -2.329 O07 5IA 63
5IA O09 O4 O 0 1 N N N N N N 29.185 19.780 11.390 6.995 -3.011 -3.184 O09 5IA 64
5IA O10 O5 O 0 1 N N N N N N 28.004 18.554 9.366 7.825 -0.655 -2.363 O10 5IA 65
5IA O14 O6 O 0 1 N N N N N N 28.499 18.306 5.477 11.564 1.719 -3.108 O14 5IA 66
5IA O16 O7 O 0 1 N N N N N N 29.718 20.716 4.888 13.089 1.557 -1.071 O16 5IA 67
5IA O28 O8 O 0 1 N N N N N N 26.518 20.369 6.548 10.213 -0.477 -0.678 O28 5IA 68
5IA O29 O9 O 0 1 N N N N N N 28.963 17.218 11.332 6.508 -0.913 -4.500 O29 5IA 69
5IA O30 O10 O 0 1 N N N N N N 25.787 16.299 10.828 3.559 -2.786 -3.356 O30 5IA 70
5IA O31 O11 O 0 1 N N N N N N 24.373 17.794 12.404 3.210 -0.309 -3.693 O31 5IA 71
5IA O32 O12 O 0 1 N N N N N N 27.389 15.643 15.856 0.982 -0.237 0.554 O32 5IA 72
5IA O36 O13 O 0 1 N N N N N N 25.339 16.344 18.503 -1.737 -1.686 2.302 O36 5IA 73
5IA O59 O14 O 0 1 N N N N N N 22.979 5.597 22.209 -5.438 6.598 3.238 O59 5IA 74
5IA O67 O15 O 0 1 N N N N N N 23.640 5.698 20.057 -4.253 6.722 1.366 O67 5IA 75
5IA O79 O16 O 0 1 N N N N N N 26.338 7.939 20.900 -6.878 5.932 -0.516 O79 5IA 76
5IA P06 P1 P 0 1 N N N N N N 25.693 17.301 11.939 3.711 -1.470 -2.697 P06 5IA 77
5IA P08 P2 P 0 1 N N N N N N 28.364 18.564 11.117 6.644 -1.441 -3.124 P08 5IA 78
5IA S34 S1 S 0 1 N N N N N N 28.248 15.478 18.354 0.767 -0.858 3.156 S34 5IA 79
5IA H1 H1 H 0 1 N N N N N N 25.693 17.727 15.491 -1.065 -1.797 -0.818 H1 5IA 80
5IA H2 H2 H 0 1 N N N N N N 25.527 14.705 16.086 1.469 -2.259 0.768 H2 5IA 81
5IA H3 H3 H 0 1 N N N N N N 24.621 15.672 13.863 1.259 -2.737 -1.697 H3 5IA 82
5IA H4 H4 H 0 1 N N N N N N 25.944 14.472 13.669 0.904 -1.014 -1.969 H4 5IA 83
5IA H5 H5 H 0 1 N N N N N N 27.602 20.509 9.028 9.135 -0.068 -3.849 H5 5IA 84
5IA H6 H6 H 0 1 N N N N N N 26.184 19.434 9.272 9.574 -1.562 -2.987 H6 5IA 85
5IA H7 H7 H 0 1 N N N N N N 26.547 18.334 7.045 9.560 1.218 -1.712 H7 5IA 86
5IA H8 H8 H 0 1 N N N N N N 29.274 18.898 7.300 11.671 -0.355 -3.201 H8 5IA 87
5IA H9 H9 H 0 1 N N N N N N 29.225 21.274 6.842 13.050 -0.502 -1.355 H9 5IA 88
5IA H10 H10 H 0 1 N N N N N N 27.240 20.664 4.631 11.144 1.049 0.407 H10 5IA 89
5IA H11 H11 H 0 1 N N N N N N 25.040 23.373 1.832 14.600 1.561 3.742 H11 5IA 90
5IA H12 H12 H 0 1 N N N N N N 28.130 23.206 7.612 11.151 -2.731 0.267 H12 5IA 91
5IA H13 H13 H 0 1 N N N N N N 28.238 17.279 16.798 -0.239 0.892 1.823 H13 5IA 92
5IA H14 H14 H 0 1 N N N N N N 26.287 18.085 17.743 -1.926 -0.326 0.739 H14 5IA 93
5IA H15 H15 H 0 1 N N N N N N 26.720 17.002 21.602 -2.670 -3.984 1.060 H15 5IA 94
5IA H16 H16 H 0 1 N N N N N N 26.946 18.029 20.145 -2.810 -4.190 2.823 H16 5IA 95
5IA H17 H17 H 0 1 N N N N N N 24.140 18.120 20.693 -5.217 -3.610 2.700 H17 5IA 96
5IA H18 H18 H 0 1 N N N N N N 24.937 18.242 22.298 -5.078 -3.404 0.938 H18 5IA 97
5IA H19 H19 H 0 1 N N N N N N 26.093 19.971 20.126 -4.380 -5.773 0.716 H19 5IA 98
5IA H20 H20 H 0 1 N N N N N N 24.425 20.388 20.646 -4.520 -5.979 2.478 H20 5IA 99
5IA H21 H21 H 0 1 N N N N N N 25.112 21.062 22.791 -6.927 -5.399 2.356 H21 5IA 100
5IA H22 H22 H 0 1 N N N N N N 26.621 20.090 22.732 -6.788 -5.193 0.593 H22 5IA 101
5IA H23 H23 H 0 1 N N N N N N 27.844 21.783 21.731 -6.090 -7.562 0.371 H23 5IA 102
5IA H24 H24 H 0 1 N N N N N N 26.461 22.339 20.729 -6.230 -7.768 2.134 H24 5IA 103
5IA H25 H25 H 0 1 N N N N N N 25.607 23.309 23.110 -8.637 -7.188 2.011 H25 5IA 104
5IA H26 H26 H 0 1 N N N N N N 27.365 23.263 23.478 -8.498 -6.981 0.249 H26 5IA 105
5IA H27 H27 H 0 1 N N N N N N 27.555 24.567 21.144 -7.800 -9.351 0.027 H27 5IA 106
5IA H28 H28 H 0 1 N N N N N N 27.189 25.433 22.675 -7.940 -9.557 1.789 H28 5IA 107
5IA H29 H29 H 0 1 N N N N N N 25.331 26.335 21.719 -10.347 -8.976 1.667 H29 5IA 108
5IA H30 H30 H 0 1 N N N N N N 24.646 24.690 21.499 -10.208 -8.770 -0.096 H30 5IA 109
5IA H31 H31 H 0 1 N N N N N N 26.300 24.850 19.288 -9.510 -11.139 -0.318 H31 5IA 110
5IA H32 H32 H 0 1 N N N N N N 25.845 26.577 19.485 -9.650 -11.345 1.445 H32 5IA 111
5IA H33 H33 H 0 1 N N N N N N 23.716 24.371 19.333 -12.057 -10.765 1.322 H33 5IA 112
5IA H34 H34 H 0 1 N N N N N N 24.437 25.077 17.847 -11.918 -10.559 -0.440 H34 5IA 113
5IA H35 H35 H 0 1 N N N N N N 23.606 27.360 18.669 -11.220 -12.928 -0.662 H35 5IA 114
5IA H36 H36 H 0 1 N N N N N N 22.357 26.187 18.130 -11.360 -13.134 1.100 H36 5IA 115
5IA H37 H37 H 0 1 N N N N N N 21.228 26.401 20.076 -13.767 -12.554 0.978 H37 5IA 116
5IA H38 H38 H 0 1 N N N N N N 22.698 26.025 21.038 -13.628 -12.348 -0.785 H38 5IA 117
5IA H39 H39 H 0 1 N N N N N N 21.768 28.257 21.655 -14.522 -14.590 -0.219 H39 5IA 118
5IA H40 H40 H 0 1 N N N N N N 23.395 28.424 20.911 -12.931 -14.717 -1.007 H40 5IA 119
5IA H41 H41 H 0 1 N N N N N N 21.925 28.800 19.950 -13.070 -14.923 0.756 H41 5IA 120
5IA H42 H42 H 0 1 N N N N N N 25.951 13.765 18.521 -2.750 0.297 1.938 H42 5IA 121
5IA H43 H43 H 0 1 N N N N N N 24.311 13.836 19.250 -3.999 0.448 3.197 H43 5IA 122
5IA H44 H44 H 0 1 N N N N N N 26.745 12.244 20.289 -4.505 0.379 0.188 H44 5IA 123
5IA H45 H45 H 0 1 N N N N N N 25.218 12.442 21.213 -5.753 0.530 1.448 H45 5IA 124
5IA H46 H46 H 0 1 N N N N N N 24.372 11.436 18.670 -4.710 2.639 2.229 H46 5IA 125
5IA H47 H47 H 0 1 N N N N N N 25.873 10.517 19.030 -3.461 2.488 0.970 H47 5IA 126
5IA H48 H48 H 0 1 N N N N N N 24.684 10.167 21.441 -5.216 2.569 -0.780 H48 5IA 127
5IA H49 H49 H 0 1 N N N N N N 23.188 10.500 20.504 -6.465 2.720 0.479 H49 5IA 128
5IA H50 H50 H 0 1 N N N N N N 23.698 8.523 18.989 -4.154 4.674 0.089 H50 5IA 129
5IA H51 H51 H 0 1 N N N N N N 21.885 3.931 21.546 -5.047 8.628 2.962 H51 5IA 130
5IA H52 H52 H 0 1 N N N N N N 23.649 3.660 21.750 -3.737 7.700 3.730 H52 5IA 131
5IA H53 H53 H 0 1 N N N N N N 21.358 1.835 22.941 -3.831 7.138 6.090 H53 5IA 132
5IA H54 H54 H 0 1 N N N N N N 20.925 0.883 25.208 -4.698 7.752 8.311 H54 5IA 133
5IA H55 H55 H 0 1 N N N N N N 21.822 2.008 27.249 -6.701 9.172 8.502 H55 5IA 134
5IA H56 H56 H 0 1 N N N N N N 23.147 4.128 27.022 -7.837 9.977 6.471 H56 5IA 135
5IA H57 H57 H 0 1 N N N N N N 23.573 5.065 24.754 -6.965 9.370 4.250 H57 5IA 136
5IA H58 H58 H 0 1 N N N N N N 27.986 6.948 17.571 -6.489 6.503 -3.126 H58 5IA 137
5IA H59 H59 H 0 1 N N N N N N 28.190 7.164 19.342 -7.701 5.207 -2.983 H59 5IA 138
5IA H60 H60 H 0 1 N N N N N N 26.719 4.905 19.518 -5.175 5.100 -4.692 H60 5IA 139
5IA H61 H61 H 0 1 N N N N N N 27.198 4.668 17.803 -6.387 3.804 -4.549 H61 5IA 140
5IA H62 H62 H 0 1 N N N N N N 30.750 3.867 18.264 -9.056 5.703 -6.117 H62 5IA 141
5IA H63 H63 H 0 1 N N N N N N 30.241 5.553 17.911 -8.755 5.615 -4.365 H63 5IA 142
5IA H64 H64 H 0 1 N N N N N N 29.947 4.084 15.890 -8.381 3.329 -6.352 H64 5IA 143
5IA H65 H65 H 0 1 N N N N N N 28.869 2.999 16.832 -8.080 3.240 -4.600 H65 5IA 144
5IA H66 H66 H 0 1 N N N N N N 28.360 4.686 16.479 -9.733 3.497 -5.207 H66 5IA 145
5IA H67 H67 H 0 1 N N N N N N 30.510 5.068 20.569 -7.122 7.361 -4.558 H67 5IA 146
5IA H68 H68 H 0 1 N N N N N N 29.362 6.391 20.167 -7.423 7.449 -6.310 H68 5IA 147
5IA H69 H69 H 0 1 N N N N N N 29.165 5.728 22.562 -4.745 6.805 -4.994 H69 5IA 148
5IA H70 H70 H 0 1 N N N N N N 27.649 5.361 21.670 -5.046 6.893 -6.747 H70 5IA 149
5IA H71 H71 H 0 1 N N N N N N 28.797 4.039 22.072 -5.186 8.358 -5.745 H71 5IA 150
5IA H72 H72 H 0 1 N N N N N N 28.104 2.894 20.616 -6.793 3.922 -6.910 H72 5IA 151
5IA H73 H73 H 0 1 N N N N N N 28.062 2.422 18.884 -5.581 5.218 -7.053 H73 5IA 152
5IA H74 H74 H 0 1 N N N N N N 29.820 1.100 20.133 -8.530 5.449 -7.804 H74 5IA 153
5IA H75 H75 H 0 1 N N N N N N 30.583 2.155 18.895 -7.318 6.745 -7.947 H75 5IA 154
5IA H76 H76 H 0 1 N N N N N N 30.625 2.627 20.628 -7.178 5.280 -8.949 H76 5IA 155
5IA H77 H77 H 0 1 N N N N N N 25.351 27.410 3.697 13.954 -3.666 4.090 H77 5IA 156
5IA H78 H78 H 0 1 N N N N N N 25.315 27.109 5.302 14.923 -2.771 5.131 H78 5IA 157
5IA H79 H79 H 0 1 N N N N N N 22.802 8.312 21.666 -6.261 4.495 2.103 H79 5IA 158
5IA H80 H80 H 0 1 N N N N N N 25.615 7.383 17.818 -5.169 4.131 -2.348 H80 5IA 159
5IA H81 H81 H 0 1 N N N N N N 23.825 17.789 16.784 -0.441 -3.966 -0.035 H81 5IA 160
5IA H82 H82 H 0 1 N N N N N N 30.049 19.519 11.688 7.100 -3.424 -2.316 H82 5IA 161
5IA H83 H83 H 0 1 N N N N N N 28.299 17.432 5.790 12.437 1.890 -3.487 H83 5IA 162
5IA H84 H84 H 0 1 N N N N N N 30.601 20.483 5.149 13.670 1.782 -1.810 H84 5IA 163
5IA H85 H85 H 0 1 N N N N N N 23.684 17.380 11.898 3.281 0.582 -3.326 H85 5IA 164
5IA H86 H86 H 0 1 N N N N N N 28.323 16.367 19.300 1.801 -0.038 3.414 H86 5IA 165
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5IA C21 N22 DOUB Y N 1
5IA C21 N20 SING Y N 2
5IA N22 C23 SING Y N 3
5IA N20 C19 DOUB Y N 4
5IA C23 N24 SING N N 5
5IA C23 C25 DOUB Y N 6
5IA C19 C25 SING Y N 7
5IA C19 N18 SING Y N 8
5IA O16 C15 SING N N 9
5IA C25 N26 SING Y N 10
5IA O14 C13 SING N N 11
5IA C17 N18 SING N N 12
5IA C17 C15 SING N N 13
5IA C17 O28 SING N N 14
5IA N18 C27 SING Y N 15
5IA C15 C13 SING N N 16
5IA N26 C27 DOUB Y N 17
5IA C13 C12 SING N N 18
5IA O28 C12 SING N N 19
5IA C12 C11 SING N N 20
5IA C11 O10 SING N N 21
5IA O10 P08 SING N N 22
5IA O30 P06 DOUB N N 23
5IA P08 O29 DOUB N N 24
5IA P08 O09 SING N N 25
5IA P08 O07 SING N N 26
5IA O07 P06 SING N N 27
5IA P06 O31 SING N N 28
5IA P06 O05 SING N N 29
5IA O05 C04 SING N N 30
5IA C04 C03 SING N N 31
5IA C03 O32 SING N N 32
5IA C03 C02 SING N N 33
5IA O32 C33 SING N N 34
5IA C02 O01 SING N N 35
5IA C02 C35 SING N N 36
5IA C74 C73 SING N N 37
5IA C33 C35 SING N N 38
5IA C33 S34 SING N N 39
5IA C35 O36 SING N N 40
5IA C73 N72 SING N N 41
5IA O36 C37 SING N N 42
5IA C70 N69 SING N N 43
5IA C70 C71 SING N N 44
5IA N69 C68 SING N N 45
5IA C71 N72 SING N N 46
5IA C47 C48 SING N N 47
5IA C47 C46 SING N N 48
5IA C48 C49 SING N N 49
5IA N72 C77 SING N N 50
5IA N72 C75 SING N N 51
5IA C52 C53 SING N N 52
5IA C52 N51 SING N N 53
5IA C54 C53 SING N N 54
5IA C54 C55 SING N N 55
5IA C77 C78 SING N N 56
5IA C46 C45 SING N N 57
5IA C37 N51 DOUB N N 58
5IA C37 C38 SING N N 59
5IA C68 C56 SING N N 60
5IA C68 O79 DOUB N N 61
5IA C56 C55 SING N N 62
5IA C56 N57 SING N N 63
5IA O67 C58 DOUB N N 64
5IA C49 C50 SING N N 65
5IA C75 C76 SING N N 66
5IA C38 C39 SING N N 67
5IA C40 C39 SING N N 68
5IA C40 C41 SING N N 69
5IA N57 C58 SING N N 70
5IA C58 O59 SING N N 71
5IA C45 C44 SING N N 72
5IA C42 C41 SING N N 73
5IA C42 C43 SING N N 74
5IA C44 C43 SING N N 75
5IA C60 O59 SING N N 76
5IA C60 C61 SING N N 77
5IA C61 C62 DOUB Y N 78
5IA C61 C66 SING Y N 79
5IA C62 C63 SING Y N 80
5IA C66 C65 DOUB Y N 81
5IA C63 C64 DOUB Y N 82
5IA C65 C64 SING Y N 83
5IA C02 H1 SING N N 84
5IA C03 H2 SING N N 85
5IA C04 H3 SING N N 86
5IA C04 H4 SING N N 87
5IA C11 H5 SING N N 88
5IA C11 H6 SING N N 89
5IA C12 H7 SING N N 90
5IA C13 H8 SING N N 91
5IA C15 H9 SING N N 92
5IA C17 H10 SING N N 93
5IA C21 H11 SING N N 94
5IA C27 H12 SING N N 95
5IA C33 H13 SING N N 96
5IA C35 H14 SING N N 97
5IA C38 H15 SING N N 98
5IA C38 H16 SING N N 99
5IA C39 H17 SING N N 100
5IA C39 H18 SING N N 101
5IA C40 H19 SING N N 102
5IA C40 H20 SING N N 103
5IA C41 H21 SING N N 104
5IA C41 H22 SING N N 105
5IA C42 H23 SING N N 106
5IA C42 H24 SING N N 107
5IA C43 H25 SING N N 108
5IA C43 H26 SING N N 109
5IA C44 H27 SING N N 110
5IA C44 H28 SING N N 111
5IA C45 H29 SING N N 112
5IA C45 H30 SING N N 113
5IA C46 H31 SING N N 114
5IA C46 H32 SING N N 115
5IA C47 H33 SING N N 116
5IA C47 H34 SING N N 117
5IA C48 H35 SING N N 118
5IA C48 H36 SING N N 119
5IA C49 H37 SING N N 120
5IA C49 H38 SING N N 121
5IA C50 H39 SING N N 122
5IA C50 H40 SING N N 123
5IA C50 H41 SING N N 124
5IA C52 H42 SING N N 125
5IA C52 H43 SING N N 126
5IA C53 H44 SING N N 127
5IA C53 H45 SING N N 128
5IA C54 H46 SING N N 129
5IA C54 H47 SING N N 130
5IA C55 H48 SING N N 131
5IA C55 H49 SING N N 132
5IA C56 H50 SING N N 133
5IA C60 H51 SING N N 134
5IA C60 H52 SING N N 135
5IA C62 H53 SING N N 136
5IA C63 H54 SING N N 137
5IA C64 H55 SING N N 138
5IA C65 H56 SING N N 139
5IA C66 H57 SING N N 140
5IA C70 H58 SING N N 141
5IA C70 H59 SING N N 142
5IA C71 H60 SING N N 143
5IA C71 H61 SING N N 144
5IA C73 H62 SING N N 145
5IA C73 H63 SING N N 146
5IA C74 H64 SING N N 147
5IA C74 H65 SING N N 148
5IA C74 H66 SING N N 149
5IA C75 H67 SING N N 150
5IA C75 H68 SING N N 151
5IA C76 H69 SING N N 152
5IA C76 H70 SING N N 153
5IA C76 H71 SING N N 154
5IA C77 H72 SING N N 155
5IA C77 H73 SING N N 156
5IA C78 H74 SING N N 157
5IA C78 H75 SING N N 158
5IA C78 H76 SING N N 159
5IA N24 H77 SING N N 160
5IA N24 H78 SING N N 161
5IA N57 H79 SING N N 162
5IA N69 H80 SING N N 163
5IA O01 H81 SING N N 164
5IA O09 H82 SING N N 165
5IA O14 H83 SING N N 166
5IA O16 H84 SING N N 167
5IA O31 H85 SING N N 168
5IA S34 H86 SING N N 169
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5IA SMILES ACDLabs 12.01 "Nc1ncnc2c1ncn2C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(S)C(O/C(=N\CCCCC(NC(=O)OCc3ccccc3)C(=O)NCC[N+](CC)(CC)CC)CCCCCCCCCCCCC)C2O)C(O)C1O"
5IA InChI InChI 1.03 "InChI=1S/C51H85N9O16P2S/c1-5-9-10-11-12-13-14-15-16-17-21-27-40(53-28-23-22-26-37(48(64)54-29-30-60(6-2,7-3)8-4)58-51(65)70-31-36-24-19-18-20-25-36)75-45-43(62)39(74-50(45)79)33-72-78(68,69)76-77(66,67)71-32-38-42(61)44(63)49(73-38)59-35-57-41-46(52)55-34-56-47(41)59/h18-20,24-25,34-35,37-39,42-45,49-50,61-63H,5-17,21-23,26-33H2,1-4H3,(H6-,52,54,55,56,58,64,65,66,67,68,69,79)/p+1/b53-40-/t37-,38+,39+,42+,43+,44+,45+,49+,50+/m0/s1"
5IA InChIKey InChI 1.03 NDEIYVWRFNKRPD-LQYQRRKDSA-O
5IA SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCC(O[C@H]1[C@@H](S)O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@H]1O)=NCCCC[C@H](NC(=O)OCc5ccccc5)C(=O)NCC[N+](CC)(CC)CC"
5IA SMILES CACTVS 3.385 "CCCCCCCCCCCCCC(O[CH]1[CH](S)O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH]1O)=NCCCC[CH](NC(=O)OCc5ccccc5)C(=O)NCC[N+](CC)(CC)CC"
5IA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCC/C(=N/CCCC[C@@H](C(=O)NCC[N+](CC)(CC)CC)NC(=O)OCc1ccccc1)/O[C@@H]2[C@@H]([C@H](O[C@@H]2S)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O"
5IA SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCC(=NCCCCC(C(=O)NCC[N+](CC)(CC)CC)NC(=O)OCc1ccccc1)OC2C(C(OC2S)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5IA "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(2S)-6-[(Z)-(1-{[(2R,3R,4R,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-4-hydroxy-2-sulfanyloxolan-3-yl]oxy}tetradecylidene)amino]-2-{[(benzyloxy)carbonyl]amino}hexanoyl]amino}-N,N,N-triethylethan-1-aminium (non-preferred name)"
5IA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(2~{S})-6-[(~{Z})-1-[(2~{R},3~{R},4~{R},5~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-4-oxidanyl-2-sulfanyl-oxolan-3-yl]oxytetradecylideneamino]-2-(phenylmethoxycarbonylamino)hexanoyl]amino]ethyl-triethyl-azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5IA "Create component" 2021-07-20 RCSB
5IA "Initial release" 2024-08-07 RCSB
#