data_5ID # _chem_comp.id 5ID _chem_comp.name "(2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H13 I N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 5-IODOTUBERCIDIN _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-10-16 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 392.150 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5ID _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2C47 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5ID "O5'" "O5'" O 0 1 N N N 2.406 33.277 20.148 -4.584 -2.905 1.532 "O5'" 5ID 1 5ID "C5'" "C5'" C 0 1 N N N 3.690 32.661 20.403 -4.586 -2.277 0.248 "C5'" 5ID 2 5ID "C4'" "C4'" C 0 1 N N R 4.766 33.737 20.752 -4.115 -0.829 0.388 "C4'" 5ID 3 5ID "O4'" "O4'" O 0 1 N N N 5.031 34.425 19.544 -2.727 -0.788 0.786 "O4'" 5ID 4 5ID "C1'" "C1'" C 0 1 N N R 5.305 35.846 19.837 -2.263 0.529 0.415 "C1'" 5ID 5 5ID N9 N9 N 0 1 Y N N 4.405 36.771 19.001 -0.802 0.543 0.307 N9 5ID 6 5ID C8 C8 C 0 1 Y N N 3.190 36.428 18.577 -0.018 -0.563 0.098 C8 5ID 7 5ID C7 C7 C 0 1 Y N N 2.665 37.452 17.887 1.275 -0.202 0.050 C7 5ID 8 5ID C5 C5 C 0 1 Y N N 3.569 38.516 17.875 1.316 1.247 0.237 C5 5ID 9 5ID C6 C6 C 0 1 Y N N 3.602 39.816 17.346 2.331 2.213 0.297 C6 5ID 10 5ID N1 N1 N 0 1 Y N N 4.699 40.556 17.569 1.985 3.482 0.494 N1 5ID 11 5ID C2 C2 C 0 1 Y N N 5.731 40.065 18.244 0.718 3.827 0.636 C2 5ID 12 5ID N3 N3 N 0 1 Y N N 5.732 38.838 18.735 -0.266 2.955 0.592 N3 5ID 13 5ID C4 C4 C 0 1 Y N N 4.663 38.040 18.588 -0.020 1.661 0.399 C4 5ID 14 5ID N6 N6 N 0 1 N N N 2.595 40.348 16.630 3.659 1.856 0.148 N6 5ID 15 5ID "C2'" "C2'" C 0 1 N N R 4.980 36.098 21.336 -2.907 0.803 -0.962 "C2'" 5ID 16 5ID "O2'" "O2'" O 0 1 N N N 6.189 36.353 22.116 -3.292 2.174 -1.078 "O2'" 5ID 17 5ID "C3'" "C3'" C 0 1 N N S 4.228 34.810 21.729 -4.153 -0.113 -0.981 "C3'" 5ID 18 5ID "O3'" "O3'" O 0 1 N N N 4.423 34.427 23.114 -5.346 0.664 -1.106 "O3'" 5ID 19 5ID IAE IAE I 0 1 N N N 0.724 37.383 17.000 2.916 -1.470 -0.245 IAE 5ID 20 5ID "H5'" "H5'" H 0 1 N N N 1.751 32.622 19.936 -4.886 -3.814 1.399 "H5'" 5ID 21 5ID "H5'1" "1H5'" H 0 0 N N N 4.013 32.016 19.553 -5.596 -2.293 -0.162 "H5'1" 5ID 22 5ID "H5'2" "2H5'" H 0 0 N N N 3.621 31.877 21.193 -3.914 -2.815 -0.421 "H5'2" 5ID 23 5ID "H4'" "H4'" H 0 1 N N N 5.692 33.261 21.152 -4.733 -0.297 1.111 "H4'" 5ID 24 5ID "H1'" "H1'" H 0 1 N N N 6.378 36.076 19.636 -2.596 1.268 1.144 "H1'" 5ID 25 5ID H8 H8 H 0 1 N N N 2.696 35.460 18.763 -0.385 -1.573 -0.010 H8 5ID 26 5ID H2 H2 H 0 1 N N N 6.617 40.702 18.400 0.480 4.869 0.795 H2 5ID 27 5ID H6N1 1H6N H 0 0 N N N 2.619 41.292 16.246 4.351 2.535 0.188 H6N1 5ID 28 5ID H6N2 2H6N H 0 0 N N N 1.761 39.785 16.461 3.899 0.927 0.009 H6N2 5ID 29 5ID "H2'" "H2'" H 0 1 N N N 4.291 36.971 21.424 -2.221 0.531 -1.764 "H2'" 5ID 30 5ID HA HA H 0 1 N N N 6.652 37.146 21.874 -3.741 2.268 -1.929 HA 5ID 31 5ID "H3'" "H3'" H 0 1 N N N 3.138 34.956 21.543 -4.084 -0.838 -1.793 "H3'" 5ID 32 5ID HB HB H 0 1 N N N 4.093 35.086 23.714 -6.088 0.048 -1.050 HB 5ID 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5ID "O5'" "C5'" SING N N 1 5ID "O5'" "H5'" SING N N 2 5ID "C5'" "C4'" SING N N 3 5ID "C5'" "H5'1" SING N N 4 5ID "C5'" "H5'2" SING N N 5 5ID "C4'" "O4'" SING N N 6 5ID "C4'" "C3'" SING N N 7 5ID "C4'" "H4'" SING N N 8 5ID "O4'" "C1'" SING N N 9 5ID "C1'" N9 SING N N 10 5ID "C1'" "C2'" SING N N 11 5ID "C1'" "H1'" SING N N 12 5ID N9 C8 SING Y N 13 5ID N9 C4 SING Y N 14 5ID C8 C7 DOUB Y N 15 5ID C8 H8 SING N N 16 5ID C7 C5 SING Y N 17 5ID C7 IAE SING N N 18 5ID C5 C6 DOUB Y N 19 5ID C5 C4 SING Y N 20 5ID C6 N1 SING Y N 21 5ID C6 N6 SING N N 22 5ID N1 C2 DOUB Y N 23 5ID C2 N3 SING Y N 24 5ID C2 H2 SING N N 25 5ID N3 C4 DOUB Y N 26 5ID N6 H6N1 SING N N 27 5ID N6 H6N2 SING N N 28 5ID "C2'" "O2'" SING N N 29 5ID "C2'" "C3'" SING N N 30 5ID "C2'" "H2'" SING N N 31 5ID "O2'" HA SING N N 32 5ID "C3'" "O3'" SING N N 33 5ID "C3'" "H3'" SING N N 34 5ID "O3'" HB SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5ID SMILES ACDLabs 10.04 "Ic2c1c(ncnc1n(c2)C3OC(C(O)C3O)CO)N" 5ID SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cc(I)c12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O" 5ID SMILES CACTVS 3.341 "Nc1ncnc2n(cc(I)c12)[CH]3O[CH](CO)[CH](O)[CH]3O" 5ID SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c(c2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N)I" 5ID SMILES "OpenEye OEToolkits" 1.5.0 "c1c(c2c(ncnc2n1C3C(C(C(O3)CO)O)O)N)I" 5ID InChI InChI 1.03 "InChI=1S/C11H13IN4O4/c12-4-1-16(10-6(4)9(13)14-3-15-10)11-8(19)7(18)5(2-17)20-11/h1,3,5,7-8,11,17-19H,2H2,(H2,13,14,15)/t5-,7-,8-,11-/m1/s1" 5ID InChIKey InChI 1.03 WHSIXKUPQCKWBY-IOSLPCCCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5ID "SYSTEMATIC NAME" ACDLabs 10.04 "5-iodo-7-beta-D-ribofuranosyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine" 5ID "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R)-2-(4-amino-5-iodo-pyrrolo[2,3-d]pyrimidin-7-yl)-5-(hydroxymethyl)oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5ID "Create component" 2005-10-16 EBI 5ID "Modify descriptor" 2011-06-04 RCSB 5ID "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5ID _pdbx_chem_comp_synonyms.name 5-IODOTUBERCIDIN _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##