data_5II # _chem_comp.id 5II _chem_comp.name "methyl 2-deoxy-2-methyl-alpha-D-mannopyranoside" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H16 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-18 _chem_comp.pdbx_modified_date 2022-01-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 192.210 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5II _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FE1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5II C9 C1 C 0 1 N N N -80.607 20.754 -46.743 1.563 -2.703 -0.966 C9 5II 1 5II O1 O1 O 0 1 N N N -80.421 19.315 -46.890 0.323 -1.994 -0.904 O1 5II 2 5II C1 C2 C 0 1 N N S -80.739 18.540 -45.714 -0.026 -1.547 0.408 C1 5II 3 5II C2 C3 C 0 1 N N S -80.438 17.064 -45.997 -1.466 -1.028 0.404 C2 5II 4 5II C7 C4 C 0 1 N N N -80.283 16.320 -44.683 -1.860 -0.602 1.820 C7 5II 5 5II C3 C5 C 0 1 N N R -81.546 16.513 -46.938 -1.564 0.175 -0.539 C3 5II 6 5II O3 O2 O 0 1 N N N -81.422 15.101 -47.047 -2.888 0.712 -0.493 O3 5II 7 5II C4 C6 C 0 1 N N S -82.919 16.896 -46.451 -0.562 1.244 -0.091 C4 5II 8 5II O4 O3 O 0 1 N N N -83.992 16.448 -47.329 -0.594 2.341 -1.005 O4 5II 9 5II C5 C7 C 0 1 N N R -83.051 18.406 -46.166 0.843 0.637 -0.068 C5 5II 10 5II O5 O4 O 0 1 N N N -82.070 18.816 -45.266 0.857 -0.495 0.804 O5 5II 11 5II C6 C8 C 0 1 N N N -84.380 18.757 -45.508 1.842 1.681 0.436 C6 5II 12 5II O6 O5 O 0 1 N N N -84.534 20.184 -45.386 3.167 1.154 0.348 O6 5II 13 5II H1 H1 H 0 1 N N N -80.341 21.257 -47.685 1.509 -3.586 -0.329 H1 5II 14 5II H2 H2 H 0 1 N N N -81.659 20.965 -46.499 1.756 -3.008 -1.994 H2 5II 15 5II H3 H3 H 0 1 N N N -79.962 21.126 -45.934 2.369 -2.055 -0.621 H3 5II 16 5II H4 H4 H 0 1 N N N -80.048 18.851 -44.917 0.060 -2.377 1.110 H4 5II 17 5II H5 H5 H 0 1 N N N -79.481 17.010 -46.537 -2.136 -1.816 0.061 H5 5II 18 5II H6 H6 H 0 1 N N N -79.479 16.783 -44.092 -1.190 0.188 2.161 H6 5II 19 5II H7 H7 H 0 1 N N N -81.227 16.369 -44.120 -2.885 -0.233 1.816 H7 5II 20 5II H8 H8 H 0 1 N Y N -80.031 15.269 -44.885 -1.784 -1.457 2.491 H8 5II 21 5II H9 H9 H 0 1 N N N -81.396 16.967 -47.928 -1.332 -0.139 -1.556 H9 5II 22 5II H10 H10 H 0 1 N Y N -80.550 14.882 -47.355 -3.020 1.482 -1.062 H10 5II 23 5II H11 H11 H 0 1 N N N -83.060 16.390 -45.485 -0.824 1.594 0.908 H11 5II 24 5II H12 H12 H 0 1 N Y N -84.829 16.718 -46.970 0.018 3.057 -0.783 H12 5II 25 5II H13 H13 H 0 1 N N N -82.966 18.954 -47.116 1.121 0.325 -1.074 H13 5II 26 5II H14 H14 H 0 1 N N N -85.202 18.358 -46.121 1.767 2.580 -0.175 H14 5II 27 5II H15 H15 H 0 1 N N N -84.416 18.304 -44.506 1.617 1.928 1.474 H15 5II 28 5II H16 H16 H 0 1 N Y N -85.368 20.379 -44.974 3.854 1.764 0.652 H16 5II 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5II O4 C4 SING N N 1 5II O3 C3 SING N N 2 5II C3 C4 SING N N 3 5II C3 C2 SING N N 4 5II O1 C9 SING N N 5 5II O1 C1 SING N N 6 5II C4 C5 SING N N 7 5II C5 C6 SING N N 8 5II C5 O5 SING N N 9 5II C2 C1 SING N N 10 5II C2 C7 SING N N 11 5II C1 O5 SING N N 12 5II C6 O6 SING N N 13 5II C9 H1 SING N N 14 5II C9 H2 SING N N 15 5II C9 H3 SING N N 16 5II C1 H4 SING N N 17 5II C2 H5 SING N N 18 5II C7 H6 SING N N 19 5II C7 H7 SING N N 20 5II C7 H8 SING N N 21 5II C3 H9 SING N N 22 5II O3 H10 SING N N 23 5II C4 H11 SING N N 24 5II O4 H12 SING N N 25 5II C5 H13 SING N N 26 5II C6 H14 SING N N 27 5II C6 H15 SING N N 28 5II O6 H16 SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5II InChI InChI 1.03 "InChI=1S/C8H16O5/c1-4-6(10)7(11)5(3-9)13-8(4)12-2/h4-11H,3H2,1-2H3/t4-,5+,6+,7+,8-/m0/s1" 5II InChIKey InChI 1.03 GNHGGSMJGHLAKR-WCMLQCRESA-N 5II SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1C" 5II SMILES CACTVS 3.385 "CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1C" 5II SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@@H]([C@H](O[C@@H]1OC)CO)O)O" 5II SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(OC1OC)CO)O)O" # _pdbx_chem_comp_identifier.comp_id 5II _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-methoxy-5-methyl-oxane-3,4-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 5II "CARBOHYDRATE ISOMER" D AUTHOR ? 5II "CARBOHYDRATE RING" pyranose PDB ? 5II "CARBOHYDRATE ANOMER" alpha AUTHOR ? 5II "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5II "Create component" 2021-08-18 PDBJ 5II "Modify leaving atom flag" 2021-08-31 PDBJ 5II "Initial release" 2022-02-02 RCSB ##