data_5JP # _chem_comp.id 5JP _chem_comp.name N-methyl-L-serine _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C4 H9 N O3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-10-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 119.119 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5JP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5E2A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5JP O O1 O 0 1 N N N Y N Y 5.237 33.965 -16.107 1.209 -1.235 0.917 O 5JP 1 5JP C C1 C 0 1 N N N Y N Y 5.665 34.418 -15.031 1.087 -0.540 -0.064 C 5JP 2 5JP CA C2 C 0 1 N N S Y N N 6.530 35.628 -15.034 -0.285 -0.128 -0.530 CA 5JP 3 5JP CB C3 C 0 1 N N N N N N 5.586 36.800 -14.690 -0.391 1.398 -0.520 CB 5JP 4 5JP OG O2 O 0 1 N N N N N N 6.254 38.051 -14.688 -0.059 1.890 0.781 OG 5JP 5 5JP N N1 N 0 1 N N N Y Y N 7.138 35.898 -16.357 -1.299 -0.695 0.370 N 5JP 6 5JP CN C4 C 0 1 N N N N N N 8.537 36.345 -16.401 -2.589 -0.842 -0.317 CN 5JP 7 5JP OXT O3 O 0 1 N Y N Y N Y 5.289 33.907 -13.830 2.175 -0.131 -0.736 O1 5JP 8 5JP HA H1 H 0 1 N N N Y N N 7.310 35.543 -14.262 -0.451 -0.497 -1.543 H1 5JP 9 5JP HB2 H2 H 0 1 N N N N N N 4.778 36.833 -15.435 0.300 1.815 -1.253 H2 5JP 10 5JP HB3 H3 H 0 1 N N N N N N 5.158 36.627 -13.692 -1.409 1.694 -0.771 H3 5JP 11 5JP HG H4 H 0 1 N N N N N N 5.636 38.740 -14.472 -0.105 2.852 0.861 H4 5JP 12 5JP H H5 H 0 1 N Y N Y Y N 6.587 36.606 -16.798 -1.395 -0.136 1.204 H5 5JP 13 5JP H7 H7 H 0 1 N N N N N N 8.840 36.502 -17.447 -2.932 0.134 -0.659 H7 5JP 14 5JP H8 H8 H 0 1 N N N N N N 8.638 37.289 -15.845 -2.472 -1.506 -1.173 H8 5JP 15 5JP H9 H9 H 0 1 N N N N N N 9.181 35.579 -15.944 -3.321 -1.264 0.372 H9 5JP 16 5JP HXT H10 H 0 1 N Y N Y N Y 4.681 33.190 -13.967 3.034 -0.417 -0.396 H10 5JP 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5JP CN N SING N N 1 5JP N CA SING N N 2 5JP O C DOUB N N 3 5JP CA C SING N N 4 5JP CA CB SING N N 5 5JP CB OG SING N N 6 5JP C OXT SING N N 7 5JP CA HA SING N N 8 5JP CB HB2 SING N N 9 5JP CB HB3 SING N N 10 5JP OG HG SING N N 11 5JP N H SING N N 12 5JP CN H7 SING N N 13 5JP CN H8 SING N N 14 5JP CN H9 SING N N 15 5JP OXT HXT SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5JP SMILES ACDLabs 12.01 "O=C(O)C(CO)NC" 5JP InChI InChI 1.03 "InChI=1S/C4H9NO3/c1-5-3(2-6)4(7)8/h3,5-6H,2H2,1H3,(H,7,8)/t3-/m0/s1" 5JP InChIKey InChI 1.03 PSFABYLDRXJYID-VKHMYHEASA-N 5JP SMILES_CANONICAL CACTVS 3.385 "CN[C@@H](CO)C(O)=O" 5JP SMILES CACTVS 3.385 "CN[CH](CO)C(O)=O" 5JP SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN[C@@H](CO)C(=O)O" 5JP SMILES "OpenEye OEToolkits" 1.9.2 "CNC(CO)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5JP "SYSTEMATIC NAME" ACDLabs 12.01 N-methyl-L-serine 5JP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-(methylamino)-3-oxidanyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5JP "Create component" 2015-10-02 RCSB 5JP "Initial release" 2015-10-28 RCSB 5JP "Modify leaving atom flag" 2021-09-16 PDBE 5JP "Modify backbone" 2023-11-03 PDBE 5JP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 5JP _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type Methylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0432 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #