data_5KM # _chem_comp.id 5KM _chem_comp.name "2-[[(2~{R},3~{R},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxymethyl]quinoline-7-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H17 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-13 _chem_comp.pdbx_modified_date 2021-12-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 331.320 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5KM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7P11 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5KM C1 C1 C 0 1 N N R 14.391 -6.165 9.674 5.480 0.334 0.472 C1 5KM 1 5KM C2 C2 C 0 1 N N R 13.302 -5.371 8.968 4.086 -0.283 0.655 C2 5KM 2 5KM C3 C3 C 0 1 N N R 11.959 -5.763 9.573 3.048 0.724 0.147 C3 5KM 3 5KM C4 C4 C 0 1 N N N 9.637 -5.329 9.355 0.662 0.941 0.217 C4 5KM 4 5KM C5 C5 C 0 1 Y N N 8.636 -4.765 8.381 -0.615 0.157 0.055 C5 5KM 5 5KM C6 C6 C 0 1 Y N N 7.274 -3.032 7.686 -2.923 0.117 0.068 C6 5KM 6 5KM C7 C7 C 0 1 Y N N 6.798 -3.815 6.477 -2.923 -1.266 -0.239 C7 5KM 7 5KM O4 O1 O 0 1 N N N 6.365 0.801 7.799 -7.779 0.100 0.107 O4 5KM 8 5KM C11 C8 C 0 1 N N N 5.484 0.072 7.345 -6.624 0.779 0.247 C11 5KM 9 5KM O3 O2 O 0 1 N N N 4.225 0.477 7.185 -6.645 1.964 0.510 O3 5KM 10 5KM C10 C9 C 0 1 Y N N 5.899 -1.287 6.983 -5.332 0.081 0.081 C10 5KM 11 5KM C12 C10 C 0 1 Y N N 6.804 -1.773 7.895 -4.149 0.784 0.227 C12 5KM 12 5KM N N1 N 0 1 Y N N 8.153 -3.525 8.587 -1.764 0.770 0.202 N 5KM 13 5KM C9 C11 C 0 1 Y N N 5.433 -1.974 5.852 -5.316 -1.292 -0.225 C9 5KM 14 5KM C8 C12 C 0 1 Y N N 5.879 -3.277 5.572 -4.141 -1.954 -0.381 C8 5KM 15 5KM C13 C13 C 0 1 Y N N 7.341 -5.067 6.320 -1.691 -1.926 -0.408 C13 5KM 16 5KM C14 C14 C 0 1 Y N N 8.264 -5.512 7.270 -0.544 -1.201 -0.252 C14 5KM 17 5KM O2 O3 O 0 1 N N N 10.957 -4.966 8.945 1.781 0.075 0.015 O2 5KM 18 5KM O1 O4 O 0 1 N N N 13.510 -3.937 8.966 3.992 -1.494 -0.098 O1 5KM 19 5KM C15 C15 C 0 1 N N N 11.998 -5.614 11.086 3.480 1.257 -1.191 C15 5KM 20 5KM C16 C16 C 0 1 N N N 13.138 -5.713 11.763 4.708 1.151 -1.627 C16 5KM 21 5KM O5 O5 O 0 1 N N N 14.395 -5.916 11.076 5.694 0.549 -0.926 O5 5KM 22 5KM C C17 C 0 1 N N N 15.755 -5.807 9.144 6.543 -0.621 1.016 C 5KM 23 5KM O O6 O 0 1 N N N 16.622 -6.831 9.560 7.829 -0.004 0.925 O 5KM 24 5KM H1 H1 H 0 1 N N N 14.214 -7.235 9.489 5.533 1.285 1.003 H1 5KM 25 5KM H2 H2 H 0 1 N N N 13.290 -5.709 7.921 3.911 -0.491 1.710 H2 5KM 26 5KM H3 H3 H 0 1 N N N 11.778 -6.823 9.340 2.963 1.547 0.856 H3 5KM 27 5KM H4 H4 H 0 1 N N N 9.440 -4.924 10.359 0.688 1.747 -0.516 H4 5KM 28 5KM H5 H5 H 0 1 N N N 9.549 -6.425 9.378 0.705 1.362 1.222 H5 5KM 29 5KM H6 H6 H 0 1 N N N 5.998 1.654 8.001 -8.599 0.599 0.225 H6 5KM 30 5KM H7 H7 H 0 1 N N N 7.127 -1.182 8.739 -4.168 1.839 0.461 H7 5KM 31 5KM H8 H8 H 0 1 N N N 4.725 -1.497 5.190 -6.248 -1.825 -0.336 H8 5KM 32 5KM H9 H9 H 0 1 N N N 5.533 -3.829 4.710 -4.142 -3.008 -0.617 H9 5KM 33 5KM H10 H10 H 0 1 N N N 7.062 -5.691 5.484 -1.653 -2.980 -0.642 H10 5KM 34 5KM H11 H11 H 0 1 N N N 8.711 -6.486 7.134 0.418 -1.679 -0.367 H11 5KM 35 5KM H12 H12 H 0 1 N N N 14.356 -3.740 8.582 3.129 -1.926 -0.043 H12 5KM 36 5KM H13 H13 H 0 1 N N N 11.080 -5.424 11.622 2.748 1.746 -1.817 H13 5KM 37 5KM H14 H14 H 0 1 N N N 13.126 -5.641 12.841 4.946 1.564 -2.595 H14 5KM 38 5KM H15 H15 H 0 1 N N N 16.082 -4.841 9.556 6.325 -0.852 2.059 H15 5KM 39 5KM H16 H16 H 0 1 N N N 15.734 -5.749 8.046 6.539 -1.541 0.432 H16 5KM 40 5KM H17 H17 H 0 1 N N N 17.501 -6.649 9.248 8.554 -0.554 1.253 H17 5KM 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5KM C8 C9 DOUB Y N 1 5KM C8 C7 SING Y N 2 5KM C9 C10 SING Y N 3 5KM C13 C7 DOUB Y N 4 5KM C13 C14 SING Y N 5 5KM C7 C6 SING Y N 6 5KM C10 C11 SING N N 7 5KM C10 C12 DOUB Y N 8 5KM O3 C11 DOUB N N 9 5KM C14 C5 DOUB Y N 10 5KM C11 O4 SING N N 11 5KM C6 C12 SING Y N 12 5KM C6 N DOUB Y N 13 5KM C5 N SING Y N 14 5KM C5 C4 SING N N 15 5KM O2 C4 SING N N 16 5KM O2 C3 SING N N 17 5KM O1 C2 SING N N 18 5KM C2 C3 SING N N 19 5KM C2 C1 SING N N 20 5KM C O SING N N 21 5KM C C1 SING N N 22 5KM C3 C15 SING N N 23 5KM C1 O5 SING N N 24 5KM O5 C16 SING N N 25 5KM C15 C16 DOUB N N 26 5KM C1 H1 SING N N 27 5KM C2 H2 SING N N 28 5KM C3 H3 SING N N 29 5KM C4 H4 SING N N 30 5KM C4 H5 SING N N 31 5KM O4 H6 SING N N 32 5KM C12 H7 SING N N 33 5KM C9 H8 SING N N 34 5KM C8 H9 SING N N 35 5KM C13 H10 SING N N 36 5KM C14 H11 SING N N 37 5KM O1 H12 SING N N 38 5KM C15 H13 SING N N 39 5KM C16 H14 SING N N 40 5KM C H15 SING N N 41 5KM C H16 SING N N 42 5KM O H17 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5KM InChI InChI 1.03 "InChI=1S/C17H17NO6/c19-8-15-16(20)14(5-6-23-15)24-9-12-4-3-10-1-2-11(17(21)22)7-13(10)18-12/h1-7,14-16,19-20H,8-9H2,(H,21,22)/t14-,15-,16-/m1/s1" 5KM InChIKey InChI 1.03 ZGVBVJVFIXTFPT-BZUAXINKSA-N 5KM SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1OC=C[C@@H](OCc2ccc3ccc(cc3n2)C(O)=O)[C@H]1O" 5KM SMILES CACTVS 3.385 "OC[CH]1OC=C[CH](OCc2ccc3ccc(cc3n2)C(O)=O)[CH]1O" 5KM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc2c1ccc(n2)CO[C@@H]3C=CO[C@@H]([C@@H]3O)CO)C(=O)O" 5KM SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc2c1ccc(n2)COC3C=COC(C3O)CO)C(=O)O" # _pdbx_chem_comp_identifier.comp_id 5KM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(2~{R},3~{R},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxymethyl]quinoline-7-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5KM "Create component" 2021-07-13 PDBE 5KM "Initial release" 2021-12-15 RCSB ##