data_5L1 # _chem_comp.id 5L1 _chem_comp.name "11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H24 F2 N7 Pt" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-19 _chem_comp.pdbx_modified_date 2022-09-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 703.623 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5L1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7V3T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5L1 PT1 PT1 PT 0 0 N N N 2.457 0.581 -7.874 ? ? ? PT1 5L1 1 5L1 N7 N1 N 0 1 Y N N 3.156 -2.285 -7.132 ? ? ? N7 5L1 2 5L1 N6 N2 N 0 1 Y N N 3.909 -1.012 -5.570 ? ? ? N6 5L1 3 5L1 N5 N3 N 0 1 Y N N 4.554 1.313 -5.242 ? ? ? N5 5L1 4 5L1 N3 N4 N 0 1 Y N N 1.410 -1.180 -10.225 ? ? ? N3 5L1 5 5L1 C19 C1 C 0 1 Y N N 2.427 -0.514 -9.605 ? ? ? C19 5L1 6 5L1 N1 N5 N 0 1 Y N N 1.693 2.111 -8.995 ? ? ? N1 5L1 7 5L1 C28 C2 C 0 1 Y N N 3.227 -1.002 -6.763 ? ? ? C28 5L1 8 5L1 N4 N6 N 0 1 Y N N 3.490 -0.770 -10.405 ? ? ? N4 5L1 9 5L1 C25 C3 C 0 1 Y N N 4.258 0.140 -4.709 ? ? ? C25 5L1 10 5L1 N2 N7 N 0 1 Y N N -0.256 -1.331 -8.465 ? ? ? N2 5L1 11 5L1 C27 C4 C 0 1 Y N N 3.790 -3.110 -6.216 ? ? ? C27 5L1 12 5L1 C11 C5 C 0 1 Y N N 2.288 2.007 -6.428 ? ? ? C11 5L1 13 5L1 C17 C6 C 0 1 Y N N 1.848 -1.814 -11.384 ? ? ? C17 5L1 14 5L1 C18 C7 C 0 1 Y N N 3.147 -1.570 -11.480 ? ? ? C18 5L1 15 5L1 C15 C8 C 0 1 Y N N -0.939 -1.441 -10.788 ? ? ? C15 5L1 16 5L1 C24 C9 C 0 1 Y N N 4.208 -0.135 -3.357 ? ? ? C24 5L1 17 5L1 C26 C10 C 0 1 Y N N 4.270 -2.329 -5.247 ? ? ? C26 5L1 18 5L1 C16 C11 C 0 1 Y N N 0.003 -1.337 -9.781 ? ? ? C16 5L1 19 5L1 C14 C12 C 0 1 Y N N -2.243 -1.569 -10.396 ? ? ? C14 5L1 20 5L1 C29 C13 C 0 1 N N N 2.525 -2.809 -8.381 ? ? ? C29 5L1 21 5L1 C23 C14 C 0 1 Y N N 4.551 0.892 -2.495 ? ? ? C23 5L1 22 5L1 C20 C15 C 0 1 N N N 4.854 -0.289 -10.166 ? ? ? C20 5L1 23 5L1 C22 C16 C 0 1 Y N N 4.899 2.118 -3.008 ? ? ? C22 5L1 24 5L1 C5 C17 C 0 1 Y N N 1.393 3.265 -8.285 ? ? ? C5 5L1 25 5L1 C21 C18 C 0 1 Y N N 4.868 2.289 -4.367 ? ? ? C21 5L1 26 5L1 C6 C19 C 0 1 Y N N 1.780 3.199 -6.875 ? ? ? C6 5L1 27 5L1 F2 F1 F 0 1 N N N 2.989 2.909 -2.963 ? ? ? F2 5L1 28 5L1 C13 C20 C 0 1 Y N N -2.572 -1.589 -9.050 ? ? ? C13 5L1 29 5L1 C10 C21 C 0 1 Y N N 2.682 1.913 -5.112 ? ? ? C10 5L1 30 5L1 C12 C22 C 0 1 Y N N -1.574 -1.458 -8.122 ? ? ? C12 5L1 31 5L1 C1 C23 C 0 1 Y N N 1.375 2.023 -10.296 ? ? ? C1 5L1 32 5L1 F1 F2 F 0 1 N N N 1.101 5.453 -6.401 ? ? ? F1 5L1 33 5L1 C4 C24 C 0 1 Y N N 0.770 4.334 -8.964 ? ? ? C4 5L1 34 5L1 C9 C25 C 0 1 Y N N 2.557 3.005 -4.305 ? ? ? C9 5L1 35 5L1 C7 C26 C 0 1 Y N N 1.667 4.273 -5.958 ? ? ? C7 5L1 36 5L1 C8 C27 C 0 1 Y N N 2.062 4.189 -4.672 ? ? ? C8 5L1 37 5L1 C3 C28 C 0 1 Y N N 0.461 4.218 -10.278 ? ? ? C3 5L1 38 5L1 C2 C29 C 0 1 Y N N 0.752 3.063 -11.020 ? ? ? C2 5L1 39 5L1 H27 H1 H 0 1 N N N 3.879 -4.185 -6.276 ? ? ? H27 5L1 40 5L1 H17 H2 H 0 1 N N N 1.247 -2.392 -12.071 ? ? ? H17 5L1 41 5L1 H18 H3 H 0 1 N N N 3.812 -1.928 -12.252 ? ? ? H18 5L1 42 5L1 H15 H4 H 0 1 N N N -0.659 -1.422 -11.831 ? ? ? H15 5L1 43 5L1 H24 H5 H 0 1 N N N 3.915 -1.107 -2.989 ? ? ? H24 5L1 44 5L1 H26 H6 H 0 1 N N N 4.829 -2.649 -4.380 ? ? ? H26 5L1 45 5L1 H14 H7 H 0 1 N N N -3.021 -1.655 -11.140 ? ? ? H14 5L1 46 5L1 H3C H8 H 0 1 N N N 2.621 -3.904 -8.409 ? ? ? H3C 5L1 47 5L1 H3A H9 H 0 1 N N N 1.460 -2.534 -8.397 ? ? ? H3A 5L1 48 5L1 H3B H10 H 0 1 N N N 3.029 -2.374 -9.257 ? ? ? H3B 5L1 49 5L1 H23 H11 H 0 1 N N N 4.545 0.731 -1.427 ? ? ? H23 5L1 50 5L1 H2A H12 H 0 1 N N N 4.872 0.326 -9.254 ? ? ? H2A 5L1 51 5L1 H2B H13 H 0 1 N N N 5.529 -1.148 -10.042 ? ? ? H2B 5L1 52 5L1 H2C H14 H 0 1 N N N 5.184 0.317 -11.023 ? ? ? H2C 5L1 53 5L1 H22 H15 H 0 1 N N N 5.190 2.928 -2.355 ? ? ? H22 5L1 54 5L1 H21 H16 H 0 1 N N N 5.110 3.265 -4.761 ? ? ? H21 5L1 55 5L1 H13 H17 H 0 1 N N N -3.599 -1.706 -8.738 ? ? ? H13 5L1 56 5L1 H10 H18 H 0 1 N N N 3.084 0.988 -4.725 ? ? ? H10 5L1 57 5L1 H12 H19 H 0 1 N N N -1.839 -1.455 -7.075 ? ? ? H12 5L1 58 5L1 H1 H20 H 0 1 N N N 1.608 1.107 -10.818 ? ? ? H1 5L1 59 5L1 H4 H21 H 0 1 N N N 0.539 5.247 -8.435 ? ? ? H4 5L1 60 5L1 H8 H22 H 0 1 N N N 1.984 5.021 -3.987 ? ? ? H8 5L1 61 5L1 H3 H23 H 0 1 N N N -0.027 5.045 -10.773 ? ? ? H3 5L1 62 5L1 H2 H24 H 0 1 N N N 0.516 2.976 -12.070 ? ? ? H2 5L1 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5L1 C18 C17 DOUB Y N 1 5L1 C18 N4 SING Y N 2 5L1 C17 N3 SING Y N 3 5L1 C2 C1 DOUB Y N 4 5L1 C2 C3 SING Y N 5 5L1 C15 C14 DOUB Y N 6 5L1 C15 C16 SING Y N 7 5L1 N4 C20 SING N N 8 5L1 N4 C19 DOUB Y N 9 5L1 C14 C13 SING Y N 10 5L1 C1 N1 SING Y N 11 5L1 C3 C4 DOUB Y N 12 5L1 N3 C16 SING N N 13 5L1 N3 C19 SING Y N 14 5L1 C16 N2 DOUB Y N 15 5L1 C19 PT1 SING N N 16 5L1 C13 C12 DOUB Y N 17 5L1 N1 C5 DOUB Y N 18 5L1 N1 PT1 SING N N 19 5L1 C4 C5 SING Y N 20 5L1 N2 C12 SING Y N 21 5L1 C29 N7 SING N N 22 5L1 C5 C6 SING N N 23 5L1 PT1 C28 SING N N 24 5L1 PT1 C11 SING N N 25 5L1 N7 C28 SING Y N 26 5L1 N7 C27 SING Y N 27 5L1 C6 C11 DOUB Y N 28 5L1 C6 C7 SING Y N 29 5L1 C28 N6 DOUB Y N 30 5L1 C11 C10 SING Y N 31 5L1 F1 C7 SING N N 32 5L1 C27 C26 DOUB Y N 33 5L1 C7 C8 DOUB Y N 34 5L1 N6 C26 SING Y N 35 5L1 N6 C25 SING N N 36 5L1 N5 C25 DOUB Y N 37 5L1 N5 C21 SING Y N 38 5L1 C10 C9 DOUB Y N 39 5L1 C25 C24 SING Y N 40 5L1 C8 C9 SING Y N 41 5L1 C21 C22 DOUB Y N 42 5L1 C9 F2 SING N N 43 5L1 C24 C23 DOUB Y N 44 5L1 C22 C23 SING Y N 45 5L1 C27 H27 SING N N 46 5L1 C17 H17 SING N N 47 5L1 C18 H18 SING N N 48 5L1 C15 H15 SING N N 49 5L1 C24 H24 SING N N 50 5L1 C26 H26 SING N N 51 5L1 C14 H14 SING N N 52 5L1 C29 H3C SING N N 53 5L1 C29 H3A SING N N 54 5L1 C29 H3B SING N N 55 5L1 C23 H23 SING N N 56 5L1 C20 H2A SING N N 57 5L1 C20 H2B SING N N 58 5L1 C20 H2C SING N N 59 5L1 C22 H22 SING N N 60 5L1 C21 H21 SING N N 61 5L1 C13 H13 SING N N 62 5L1 C10 H10 SING N N 63 5L1 C12 H12 SING N N 64 5L1 C1 H1 SING N N 65 5L1 C4 H4 SING N N 66 5L1 C8 H8 SING N N 67 5L1 C3 H3 SING N N 68 5L1 C2 H2 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5L1 InChI InChI 1.03 "InChI=1S/C11H6F2N.2C9H9N3.Pt/c12-8-4-5-9(10(13)7-8)11-3-1-2-6-14-11;2*1-11-6-7-12(8-11)9-4-2-3-5-10-9;/h1-4,6-7H;2*2-7H,1H3;" 5L1 InChIKey InChI 1.03 DJBNBBNLCQGCGN-UHFFFAOYSA-N 5L1 SMILES_CANONICAL CACTVS 3.385 "Cn1cc[n](c2ccccn2)c1[Pt](c3cc(F)cc(F)c3c4ccccn4)c5n(cc[n]5C)c6ccccn6" 5L1 SMILES CACTVS 3.385 "Cn1cc[n](c2ccccn2)c1[Pt](c3cc(F)cc(F)c3c4ccccn4)c5n(cc[n]5C)c6ccccn6" 5L1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[N]1=C(N(C=C1)c2ccccn2)[Pt]3(c4cc(cc(c4C5=[N]3C=CC=C5)F)F)C6=[N](C=CN6C)c7ccccn7" 5L1 SMILES "OpenEye OEToolkits" 2.0.7 "C[N]1=C(N(C=C1)c2ccccn2)[Pt]3(c4cc(cc(c4C5=[N]3C=CC=C5)F)F)C6=[N](C=CN6C)c7ccccn7" # _pdbx_chem_comp_identifier.comp_id 5L1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "11,13-bis(fluoranyl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-8-(1-methyl-3-pyridin-2-yl-imidazol-2-yl)-7$l^{4}-aza-8$l^{4}-platinatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),3,5,10,12-hexaene" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5L1 "Create component" 2021-08-19 PDBJ 5L1 "Initial release" 2022-09-28 RCSB #