data_5LH # _chem_comp.id 5LH _chem_comp.name "(phenylmethyl) ~{N}-[(9~{S},12~{S},15~{S})-9-(hydroxymethyl)-12-(2-methylpropyl)-6,11,14-tris(oxidanylidene)-1,5,10,13,18,19-hexazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate" _chem_comp.type peptide-like _chem_comp.pdbx_type ATOMP _chem_comp.formula "C27 H39 N7 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-10-20 _chem_comp.pdbx_modified_date 2016-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 557.642 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5E0H _chem_comp.pdbx_subcomponent_list "PHQ 5LE LEU GAU" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5LH C26 C8 C 0 1 N N N -22.337 40.526 -16.422 -1.860 1.580 -1.432 C1 PHQ 1 5LH O27 O1 O 0 1 N N N -22.786 40.407 -17.796 -2.143 2.619 -1.995 O1 PHQ 2 5LH O35 O2 O 0 1 N N N -22.007 41.621 -16.057 -2.797 0.627 -1.266 O2 PHQ 3 5LH C1 C21 C 0 1 N N N ? ? ? -4.125 0.912 -1.780 C2 PHQ 4 5LH C2 C27 C 0 1 Y N N ? ? ? -5.032 -0.260 -1.505 C3 PHQ 5 5LH C3 C22 C 0 1 Y N N ? ? ? -5.751 -0.316 -0.326 C4 PHQ 6 5LH C4 C23 C 0 1 Y N N ? ? ? -6.583 -1.391 -0.075 C5 PHQ 7 5LH C5 C24 C 0 1 Y N N ? ? ? -6.696 -2.410 -1.002 C6 PHQ 8 5LH C6 C25 C 0 1 Y N N ? ? ? -5.977 -2.354 -2.181 C7 PHQ 9 5LH C7 C26 C 0 1 Y N N ? ? ? -5.148 -1.276 -2.435 C8 PHQ 10 5LH N16 N1 N 0 1 N N N -23.262 33.186 -13.520 -0.723 -2.568 2.516 N16 5LE 11 5LH C17 C1 C 0 1 N N N -23.903 34.083 -12.615 -1.329 -1.461 3.294 C17 5LE 12 5LH C18 C2 C 0 1 N N N -24.990 34.863 -13.517 -2.100 -0.555 2.331 C18 5LE 13 5LH C19 C3 C 0 1 N N N -25.640 35.862 -12.581 -2.467 0.749 3.042 C19 5LE 14 5LH N20 N2 N 0 1 Y N N -24.982 37.049 -12.921 -1.939 1.885 2.283 N20 5LE 15 5LH C21 C4 C 0 1 Y N N -23.753 37.492 -12.514 -0.980 1.825 1.329 C21 5LE 16 5LH C22 C5 C 0 1 Y N N -23.470 38.744 -13.127 -0.802 3.094 0.893 C22 5LE 17 5LH C23 C6 C 0 1 N N N -22.272 39.666 -13.017 0.160 3.556 -0.170 C23 5LE 18 5LH C24 C7 C 0 1 N N S -21.483 39.615 -14.288 0.412 2.415 -1.158 C24 5LE 19 5LH N25 N3 N 0 1 N N N -22.289 39.352 -15.499 -0.607 1.379 -0.978 N25 5LE 20 5LH C36 C9 C 0 1 N N N -20.456 38.531 -14.109 1.777 1.827 -0.909 C36 5LE 21 5LH O37 O3 O 0 1 N N N -20.571 37.462 -14.691 2.305 1.923 0.179 O37 5LE 22 5LH N38 N4 N 0 1 Y N N -24.582 38.953 -13.892 -1.649 3.858 1.593 N38 5LE 23 5LH N39 N5 N 0 1 Y N N -25.437 37.966 -13.778 -2.307 3.112 2.408 N39 5LE 24 5LH N11 N6 N 0 1 N N N -19.387 38.862 -13.208 2.408 1.181 -1.938 N LEU 25 5LH C06 C10 C 0 1 N N S -18.306 37.980 -12.935 3.744 0.632 -1.603 CA LEU 26 5LH C05 C11 C 0 1 N N N -18.815 36.787 -12.184 3.616 -0.859 -1.420 C LEU 27 5LH O12 O4 O 0 1 N N N -19.798 36.867 -11.387 3.719 -1.606 -2.370 O LEU 28 5LH C07 C12 C 0 1 N N N -17.274 38.680 -12.099 4.250 1.267 -0.306 CB LEU 29 5LH C08 C13 C 0 1 N N N -16.750 39.961 -12.830 5.719 0.894 -0.096 CG LEU 30 5LH C10 C14 C 0 1 N N N -15.823 39.625 -13.986 6.568 1.520 -1.204 CD1 LEU 31 5LH C09 C15 C 0 1 N N N -16.088 40.854 -11.796 6.188 1.417 1.263 CD2 LEU 32 5LH N04 N7 N 0 1 N N N -18.127 35.542 -12.401 3.385 -1.353 -0.172 N GAU 33 5LH C03 C16 C 0 1 N N S -18.608 34.383 -11.743 3.265 -2.822 -0.062 CA GAU 34 5LH C13 C17 C 0 1 N N N -19.367 33.573 -12.750 2.773 -3.173 1.343 CB GAU 35 5LH C14 C18 C 0 1 N N N -20.848 34.150 -12.879 1.263 -3.416 1.309 CG GAU 36 5LH C15 C19 C 0 1 N N N -21.800 33.164 -13.709 0.565 -2.347 2.110 CD GAU 37 5LH O40 O5 O 0 1 N N N -21.369 32.358 -14.536 1.131 -1.310 2.384 OE1 GAU 38 5LH C02 C20 C 0 1 N N N -17.443 33.609 -11.227 2.263 -3.333 -1.099 C GAU 39 5LH O01 O6 O 0 1 N N N -16.870 34.382 -10.339 2.022 -4.725 -0.882 OXT GAU 40 5LH H13 H13 H 0 1 N N N ? ? ? -4.521 1.801 -1.289 H21 PHQ 41 5LH H34 H34 H 0 1 N N N ? ? ? -4.069 1.085 -2.855 H22 PHQ 42 5LH H35 H35 H 0 1 N N N ? ? ? -5.663 0.480 0.398 H41 PHQ 43 5LH H36 H36 H 0 1 N N N ? ? ? -7.145 -1.435 0.847 H51 PHQ 44 5LH H37 H37 H 0 1 N N N ? ? ? -7.345 -3.250 -0.805 H61 PHQ 45 5LH H38 H38 H 0 1 N N N ? ? ? -6.064 -3.150 -2.906 H71 PHQ 46 5LH H39 H39 H 0 1 N N N ? ? ? -4.586 -1.232 -3.356 H81 PHQ 47 5LH H2 H2 H 0 1 N N N -24.397 33.529 -11.804 -2.011 -1.868 4.040 H22 5LE 48 5LH H3 H3 H 0 1 N N N -23.176 34.788 -12.187 -0.544 -0.889 3.789 H23 5LE 49 5LH H4 H4 H 0 1 N N N -24.497 35.382 -14.353 -1.479 -0.334 1.464 H24 5LE 50 5LH H5 H5 H 0 1 N N N -25.739 34.161 -13.912 -3.010 -1.061 2.007 H25 5LE 51 5LH H6 H6 H 0 1 N N N -26.722 35.938 -12.766 -3.552 0.832 3.112 H26 5LE 52 5LH H7 H7 H 0 1 N N N -25.465 35.596 -11.528 -2.037 0.750 4.044 H27 5LE 53 5LH H8 H8 H 0 1 N N N -23.098 36.971 -11.832 -0.461 0.943 0.986 H28 5LE 54 5LH H10 H10 H 0 1 N N N -22.617 40.696 -12.841 -0.266 4.408 -0.700 H29 5LE 55 5LH H9 H9 H 0 1 N N N -21.637 39.344 -12.178 1.101 3.850 0.294 H30 5LE 56 5LH H11 H11 H 0 1 N N N -20.959 40.574 -14.413 0.363 2.800 -2.177 H31 5LE 57 5LH H1 H1 H 0 1 N N N -23.825 32.548 -14.046 -1.201 -3.388 2.314 H2 5LE 58 5LH H12 H12 H 0 1 N N N -22.751 38.484 -15.680 -0.380 0.547 -0.533 H1 5LE 59 5LH H14 H14 H 0 1 N N N -19.404 39.752 -12.753 2.011 1.090 -2.818 H LEU 60 5LH H15 H15 H 0 1 N N N -17.842 37.644 -13.874 4.440 0.843 -2.414 HA LEU 61 5LH H16 H16 H 0 1 N N N -17.724 38.970 -11.138 4.156 2.351 -0.372 HB2 LEU 62 5LH H17 H17 H 0 1 N N N -16.431 37.997 -11.918 3.658 0.902 0.533 HB3 LEU 63 5LH H18 H18 H 0 1 N N N -17.623 40.494 -13.235 5.826 -0.190 -0.124 HG LEU 64 5LH H19 H19 H 0 1 N N N -15.483 40.554 -14.466 6.299 1.077 -2.162 HD11 LEU 65 5LH H20 H20 H 0 1 N N N -14.953 39.068 -13.608 6.387 2.595 -1.237 HD12 LEU 66 5LH H21 H21 H 0 1 N N N -16.362 39.009 -14.721 7.623 1.336 -1.001 HD13 LEU 67 5LH H22 H22 H 0 1 N N N -16.800 41.066 -10.984 5.583 0.971 2.053 HD21 LEU 68 5LH H23 H23 H 0 1 N N N -15.204 40.345 -11.385 7.234 1.152 1.414 HD22 LEU 69 5LH H24 H24 H 0 1 N N N -15.781 41.798 -12.270 6.081 2.502 1.292 HD23 LEU 70 5LH H25 H25 H 0 1 N N N -17.329 35.496 -13.002 3.303 -0.774 0.601 H GAU 71 5LH H26 H26 H 0 1 N N N -19.273 34.654 -10.910 4.237 -3.282 -0.236 HA GAU 72 5LH H27 H27 H 0 1 N N N -19.408 32.524 -12.422 3.278 -4.074 1.691 HB2 GAU 73 5LH H28 H28 H 0 1 N N N -18.863 33.633 -13.726 2.992 -2.348 2.022 HB3 GAU 74 5LH H29 H29 H 0 1 N N N -20.808 35.122 -13.392 0.913 -3.389 0.277 HG2 GAU 75 5LH H30 H30 H 0 1 N N N -21.267 34.285 -11.871 1.042 -4.392 1.742 HG3 GAU 76 5LH H31 H31 H 0 1 N N N -17.781 32.673 -10.759 1.326 -2.783 -1.002 HO1 GAU 77 5LH H32 H32 H 0 1 N N N -16.743 33.379 -12.044 2.668 -3.186 -2.100 HO2 GAU 78 5LH H33 H33 H 0 1 N N N -16.114 33.938 -9.972 1.395 -5.117 -1.505 HXT GAU 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5LH O27 C26 DOUB N N 1 5LH C26 O35 SING N N 2 5LH C26 N25 SING N N 3 5LH N25 C24 SING N N 4 5LH O37 C36 DOUB N N 5 5LH O40 C15 DOUB N N 6 5LH C24 C36 SING N N 7 5LH C24 C23 SING N N 8 5LH C36 N11 SING N N 9 5LH C10 C08 SING N N 10 5LH N38 N39 DOUB Y N 11 5LH N38 C22 SING Y N 12 5LH N39 N20 SING Y N 13 5LH C15 N16 SING N N 14 5LH C15 C14 SING N N 15 5LH N16 C17 SING N N 16 5LH C18 C17 SING N N 17 5LH C18 C19 SING N N 18 5LH N11 C06 SING N N 19 5LH C22 C23 SING N N 20 5LH C22 C21 DOUB Y N 21 5LH C06 C05 SING N N 22 5LH C06 C07 SING N N 23 5LH N20 C19 SING N N 24 5LH N20 C21 SING Y N 25 5LH C14 C13 SING N N 26 5LH C08 C07 SING N N 27 5LH C08 C09 SING N N 28 5LH C13 C03 SING N N 29 5LH N04 C05 SING N N 30 5LH N04 C03 SING N N 31 5LH C05 O12 DOUB N N 32 5LH C03 C02 SING N N 33 5LH C02 O01 SING N N 34 5LH N16 H1 SING N N 35 5LH C17 H2 SING N N 36 5LH C17 H3 SING N N 37 5LH C18 H4 SING N N 38 5LH C18 H5 SING N N 39 5LH C19 H6 SING N N 40 5LH C19 H7 SING N N 41 5LH C21 H8 SING N N 42 5LH C23 H9 SING N N 43 5LH C23 H10 SING N N 44 5LH C24 H11 SING N N 45 5LH N25 H12 SING N N 46 5LH N11 H14 SING N N 47 5LH C06 H15 SING N N 48 5LH C07 H16 SING N N 49 5LH C07 H17 SING N N 50 5LH C08 H18 SING N N 51 5LH C10 H19 SING N N 52 5LH C10 H20 SING N N 53 5LH C10 H21 SING N N 54 5LH C09 H22 SING N N 55 5LH C09 H23 SING N N 56 5LH C09 H24 SING N N 57 5LH N04 H25 SING N N 58 5LH C03 H26 SING N N 59 5LH C13 H27 SING N N 60 5LH C13 H28 SING N N 61 5LH C14 H29 SING N N 62 5LH C14 H30 SING N N 63 5LH C02 H31 SING N N 64 5LH C02 H32 SING N N 65 5LH O01 H33 SING N N 66 5LH O35 C1 SING N N 67 5LH C1 C2 SING N N 68 5LH C2 C3 DOUB Y N 69 5LH C3 C4 SING Y N 70 5LH C4 C5 DOUB Y N 71 5LH C5 C6 SING Y N 72 5LH C6 C7 DOUB Y N 73 5LH C7 C2 SING Y N 74 5LH C1 H13 SING N N 75 5LH C1 H34 SING N N 76 5LH C3 H35 SING N N 77 5LH C4 H36 SING N N 78 5LH C5 H37 SING N N 79 5LH C6 H38 SING N N 80 5LH C7 H39 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5LH InChI InChI 1.03 "InChI=1S/C27H39N7O6/c1-18(2)13-22-25(37)29-20(16-35)9-10-24(36)28-11-6-12-34-15-21(32-33-34)14-23(26(38)30-22)31-27(39)40-17-19-7-4-3-5-8-19/h3-5,7-8,15,18,20,22-23,35H,6,9-14,16-17H2,1-2H3,(H,28,36)(H,29,37)(H,30,38)(H,31,39)/t20-,22-,23-/m0/s1" 5LH InChIKey InChI 1.03 SAMHMGNFOZHCAI-PMVMPFDFSA-N 5LH SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@@H]1NC(=O)[C@H](Cc2cn(CCCNC(=O)CC[C@@H](CO)NC1=O)nn2)NC(=O)OCc3ccccc3" 5LH SMILES CACTVS 3.385 "CC(C)C[CH]1NC(=O)[CH](Cc2cn(CCCNC(=O)CC[CH](CO)NC1=O)nn2)NC(=O)OCc3ccccc3" 5LH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC(C)C[C@H]1C(=O)N[C@@H](CCC(=O)NCCCn2cc(nn2)C[C@@H](C(=O)N1)NC(=O)OCc3ccccc3)CO" 5LH SMILES "OpenEye OEToolkits" 2.0.4 "CC(C)CC1C(=O)NC(CCC(=O)NCCCn2cc(nn2)CC(C(=O)N1)NC(=O)OCc3ccccc3)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5LH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(phenylmethyl) ~{N}-[(9~{S},12~{S},15~{S})-9-(hydroxymethyl)-12-(2-methylpropyl)-6,11,14-tris(oxidanylidene)-1,5,10,13,18,19-hexazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5LH "Create component" 2015-10-20 RCSB 5LH "Modify subcomponent list" 2015-10-20 RCSB 5LH "Other modification" 2015-10-20 RCSB 5LH "Initial release" 2016-05-04 RCSB #