data_5LV # _chem_comp.id 5LV _chem_comp.name "8-[[1-(3-azanylpropyl)piperidin-4-yl]amino]-5-[5-(hydroxymethyl)pyridin-3-yl]-3-methyl-1~{H}-1,7-naphthyridin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H30 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "8-((1-(3-aminopropyl)piperidin-4-yl)amino)-5-(5-(hydroxymethyl)pyridin-3-yl)-3-methyl-1,7-naphthyridin-2(1H)-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-13 _chem_comp.pdbx_modified_date 2021-10-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 422.523 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5LV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7P4S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5LV N1 N1 N 0 1 N N N 13.706 -8.734 20.073 -1.459 -1.321 -0.565 N1 5LV 1 5LV N3 N2 N 0 1 N N N 8.055 -13.076 15.034 -9.267 1.946 1.932 N3 5LV 2 5LV C4 C1 C 0 1 Y N N 17.103 -6.863 18.631 2.269 0.364 0.093 C4 5LV 3 5LV C5 C2 C 0 1 Y N N 17.009 -8.213 18.937 1.121 1.117 -0.119 C5 5LV 4 5LV C6 C3 C 0 1 Y N N 14.731 -8.139 19.420 -0.200 -0.775 -0.346 C6 5LV 5 5LV C7 C4 C 0 1 N N N 13.189 -10.102 19.991 -2.608 -0.442 -0.798 C7 5LV 6 5LV C8 C5 C 0 1 N N N 13.217 -10.554 18.525 -3.204 -0.014 0.546 C8 5LV 7 5LV C10 C6 C 0 1 N N N 10.074 -12.595 18.281 -6.682 0.843 -0.616 C10 5LV 8 5LV C13 C7 C 0 1 N N N 10.981 -11.345 20.173 -4.894 -0.291 -1.790 C13 5LV 9 5LV C15 C8 C 0 1 Y N N 14.682 -6.790 18.896 0.897 -1.620 -0.130 C15 5LV 10 5LV C17 C9 C 0 1 Y N N 18.444 -6.265 18.373 3.575 1.022 0.326 C17 5LV 11 5LV C20 C10 C 0 1 Y N N 20.021 -5.183 16.889 5.254 2.612 -0.272 C20 5LV 12 5LV C21 C11 C 0 1 N N N 20.334 -4.513 15.585 5.786 3.702 -1.168 C21 5LV 13 5LV C22 C12 C 0 1 Y N N 18.762 -5.711 17.137 4.027 2.030 -0.533 C22 5LV 14 5LV O O1 O 0 1 N N N 12.283 -4.178 18.689 1.681 -4.996 0.057 O 5LV 15 5LV C16 C13 C 0 1 N N N 13.380 -4.729 18.602 1.833 -3.786 0.061 C16 5LV 16 5LV C1 C14 C 0 1 N N N 14.624 -4.045 18.304 3.122 -3.255 0.285 C1 5LV 17 5LV C C15 C 0 1 N N N 14.594 -2.558 18.055 4.292 -4.183 0.492 C 5LV 18 5LV N4 N3 N 0 1 N N N 13.497 -6.060 18.861 0.764 -2.991 -0.128 N4 5LV 19 5LV C3 C16 C 0 1 Y N N 15.901 -6.133 18.604 2.159 -1.044 0.089 C3 5LV 20 5LV C2 C17 C 0 1 N N N 15.801 -4.719 18.300 3.313 -1.912 0.305 C2 5LV 21 5LV N N4 N 0 1 Y N N 15.881 -8.845 19.276 -0.047 0.538 -0.327 N 5LV 22 5LV O1 O2 O 0 1 N N N 19.282 -3.675 15.157 5.350 4.973 -0.681 O1 5LV 23 5LV C19 C18 C 0 1 Y N N 20.949 -5.261 17.915 5.989 2.184 0.819 C19 5LV 24 5LV N5 N5 N 0 1 Y N N 20.690 -5.792 19.120 5.535 1.236 1.615 N5 5LV 25 5LV C18 C19 C 0 1 Y N N 19.454 -6.267 19.333 4.373 0.651 1.408 C18 5LV 26 5LV C14 C20 C 0 1 N N N 11.759 -10.086 20.563 -3.672 -1.193 -1.603 C14 5LV 27 5LV N2 N6 N 0 1 N N N 10.992 -11.537 18.724 -5.428 0.091 -0.476 N2 5LV 28 5LV C9 C21 C 0 1 N N N 12.368 -11.799 18.320 -4.440 0.854 0.297 C9 5LV 29 5LV C11 C22 C 0 1 N N N 9.338 -12.246 16.998 -7.334 1.006 0.758 C11 5LV 30 5LV C12 C23 C 0 1 N N N 8.776 -13.445 16.259 -8.641 1.789 0.613 C12 5LV 31 5LV H1 H1 H 0 1 N N N 13.938 -8.621 21.039 -1.576 -2.284 -0.569 H1 5LV 32 5LV H2 H2 H 0 1 N N N 7.708 -13.902 14.590 -8.635 2.388 2.582 H2 5LV 33 5LV H3 H3 H 0 1 N N N 7.290 -12.475 15.266 -10.132 2.461 1.863 H3 5LV 34 5LV H5 H5 H 0 1 N N N 17.916 -8.798 18.898 1.186 2.195 -0.115 H5 5LV 35 5LV H6 H6 H 0 1 N N N 13.812 -10.781 20.592 -2.286 0.439 -1.352 H6 5LV 36 5LV H7 H7 H 0 1 N N N 14.255 -10.776 18.237 -3.489 -0.898 1.116 H7 5LV 37 5LV H8 H8 H 0 1 N N N 12.826 -9.744 17.892 -2.464 0.558 1.107 H8 5LV 38 5LV H9 H9 H 0 1 N N N 9.332 -12.770 19.074 -6.471 1.826 -1.038 H9 5LV 39 5LV H10 H10 H 0 1 N N N 10.654 -13.514 18.113 -7.359 0.301 -1.277 H10 5LV 40 5LV H11 H11 H 0 1 N N N 9.940 -11.246 20.515 -4.603 0.605 -2.339 H11 5LV 41 5LV H12 H12 H 0 1 N N N 11.444 -12.218 20.656 -5.659 -0.828 -2.351 H12 5LV 42 5LV H13 H13 H 0 1 N N N 20.507 -5.285 14.821 6.875 3.669 -1.173 H13 5LV 43 5LV H14 H14 H 0 1 N N N 21.244 -3.907 15.706 5.413 3.554 -2.181 H14 5LV 44 5LV H15 H15 H 0 1 N N N 18.016 -5.692 16.357 3.432 2.344 -1.378 H15 5LV 45 5LV H16 H16 H 0 1 N N N 13.555 -2.199 18.099 3.950 -5.217 0.435 H16 5LV 46 5LV H17 H17 H 0 1 N N N 15.191 -2.046 18.824 5.039 -4.004 -0.281 H17 5LV 47 5LV H18 H18 H 0 1 N N N 15.014 -2.344 17.061 4.732 -4.000 1.472 H18 5LV 48 5LV H19 H19 H 0 1 N N N 12.651 -6.561 19.044 -0.108 -3.388 -0.280 H19 5LV 49 5LV H20 H20 H 0 1 N N N 16.704 -4.178 18.060 4.294 -1.495 0.475 H20 5LV 50 5LV H21 H21 H 0 1 N N N 19.516 -3.269 14.330 5.656 5.723 -1.210 H21 5LV 51 5LV H22 H22 H 0 1 N N N 21.940 -4.871 17.734 6.948 2.637 1.025 H22 5LV 52 5LV H23 H23 H 0 1 N N N 19.228 -6.676 20.307 4.035 -0.123 2.082 H23 5LV 53 5LV H24 H24 H 0 1 N N N 11.814 -10.026 21.660 -3.267 -1.464 -2.578 H24 5LV 54 5LV H25 H25 H 0 1 N N N 11.229 -9.204 20.174 -3.964 -2.096 -1.067 H25 5LV 55 5LV H27 H27 H 0 1 N N N 12.388 -12.082 17.257 -4.875 1.149 1.251 H27 5LV 56 5LV H28 H28 H 0 1 N N N 12.775 -12.621 18.926 -4.152 1.745 -0.262 H28 5LV 57 5LV H29 H29 H 0 1 N N N 10.039 -11.725 16.329 -7.545 0.023 1.179 H29 5LV 58 5LV H30 H30 H 0 1 N N N 8.504 -11.574 17.250 -6.658 1.548 1.419 H30 5LV 59 5LV H31 H31 H 0 1 N N N 8.083 -13.976 16.928 -9.317 1.248 -0.049 H31 5LV 60 5LV H32 H32 H 0 1 N N N 9.608 -14.112 15.989 -8.430 2.772 0.191 H32 5LV 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5LV N3 C12 SING N N 1 5LV O1 C21 SING N N 2 5LV C21 C20 SING N N 3 5LV C12 C11 SING N N 4 5LV C20 C22 DOUB Y N 5 5LV C20 C19 SING Y N 6 5LV C11 C10 SING N N 7 5LV C22 C17 SING Y N 8 5LV C19 N5 DOUB Y N 9 5LV C C1 SING N N 10 5LV C10 N2 SING N N 11 5LV C2 C1 DOUB N N 12 5LV C2 C3 SING N N 13 5LV C1 C16 SING N N 14 5LV C9 C8 SING N N 15 5LV C9 N2 SING N N 16 5LV C17 C4 SING N N 17 5LV C17 C18 DOUB Y N 18 5LV C8 C7 SING N N 19 5LV C16 O DOUB N N 20 5LV C16 N4 SING N N 21 5LV C3 C4 DOUB Y N 22 5LV C3 C15 SING Y N 23 5LV C4 C5 SING Y N 24 5LV N2 C13 SING N N 25 5LV N4 C15 SING N N 26 5LV C15 C6 DOUB Y N 27 5LV C5 N DOUB Y N 28 5LV N5 C18 SING Y N 29 5LV N C6 SING Y N 30 5LV C6 N1 SING N N 31 5LV C7 N1 SING N N 32 5LV C7 C14 SING N N 33 5LV C13 C14 SING N N 34 5LV N1 H1 SING N N 35 5LV N3 H2 SING N N 36 5LV N3 H3 SING N N 37 5LV C5 H5 SING N N 38 5LV C7 H6 SING N N 39 5LV C8 H7 SING N N 40 5LV C8 H8 SING N N 41 5LV C10 H9 SING N N 42 5LV C10 H10 SING N N 43 5LV C13 H11 SING N N 44 5LV C13 H12 SING N N 45 5LV C21 H13 SING N N 46 5LV C21 H14 SING N N 47 5LV C22 H15 SING N N 48 5LV C H16 SING N N 49 5LV C H17 SING N N 50 5LV C H18 SING N N 51 5LV N4 H19 SING N N 52 5LV C2 H20 SING N N 53 5LV O1 H21 SING N N 54 5LV C19 H22 SING N N 55 5LV C18 H23 SING N N 56 5LV C14 H24 SING N N 57 5LV C14 H25 SING N N 58 5LV C9 H27 SING N N 59 5LV C9 H28 SING N N 60 5LV C11 H29 SING N N 61 5LV C11 H30 SING N N 62 5LV C12 H31 SING N N 63 5LV C12 H32 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5LV InChI InChI 1.03 "InChI=1S/C23H30N6O2/c1-15-9-19-20(17-10-16(14-30)11-25-12-17)13-26-22(21(19)28-23(15)31)27-18-3-7-29(8-4-18)6-2-5-24/h9-13,18,30H,2-8,14,24H2,1H3,(H,26,27)(H,28,31)" 5LV InChIKey InChI 1.03 WQPQQRVHJTZSFA-UHFFFAOYSA-N 5LV SMILES_CANONICAL CACTVS 3.385 "CC1=Cc2c(NC1=O)c(NC3CCN(CCCN)CC3)ncc2c4cncc(CO)c4" 5LV SMILES CACTVS 3.385 "CC1=Cc2c(NC1=O)c(NC3CCN(CCCN)CC3)ncc2c4cncc(CO)c4" 5LV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=Cc2c(cnc(c2NC1=O)NC3CCN(CC3)CCCN)c4cc(cnc4)CO" 5LV SMILES "OpenEye OEToolkits" 2.0.7 "CC1=Cc2c(cnc(c2NC1=O)NC3CCN(CC3)CCCN)c4cc(cnc4)CO" # _pdbx_chem_comp_identifier.comp_id 5LV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-[[1-(3-azanylpropyl)piperidin-4-yl]amino]-5-[5-(hydroxymethyl)pyridin-3-yl]-3-methyl-1~{H}-1,7-naphthyridin-2-one" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5LV _pdbx_chem_comp_synonyms.name "8-((1-(3-aminopropyl)piperidin-4-yl)amino)-5-(5-(hydroxymethyl)pyridin-3-yl)-3-methyl-1,7-naphthyridin-2(1H)-one" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5LV "Create component" 2021-07-13 PDBE 5LV "Initial release" 2021-10-13 RCSB ##