data_5MU # _chem_comp.id 5MU _chem_comp.name ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H15 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id U _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces RT _chem_comp.formula_weight 338.208 _chem_comp.one_letter_code U _chem_comp.three_letter_code 5MU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EVV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5MU N1 N1 N 0 1 N N N 45.954 22.791 42.672 -0.120 -0.274 2.226 N1 5MU 1 5MU C2 C2 C 0 1 N N N 46.476 21.767 41.934 0.512 0.912 2.245 C2 5MU 2 5MU N3 N3 N 0 1 N N N 46.007 21.674 40.638 1.295 1.261 3.282 N3 5MU 3 5MU C4 C4 C 0 1 N N N 45.077 22.496 40.022 1.453 0.424 4.327 C4 5MU 4 5MU C5 C5 C 0 1 N N N 44.584 23.568 40.864 0.796 -0.829 4.317 C5 5MU 5 5MU C5M C5M C 0 1 N N N 43.612 24.547 40.279 0.959 -1.786 5.470 C5M 5MU 6 5MU C6 C6 C 0 1 N N N 45.025 23.663 42.134 0.016 -1.155 3.264 C6 5MU 7 5MU O2 O2 O 0 1 N N N 47.298 20.988 42.401 0.375 1.679 1.312 O2 5MU 8 5MU O4 O4 O 0 1 N N N 44.773 22.294 38.828 2.161 0.739 5.266 O4 5MU 9 5MU "C1'" C1* C 0 1 N N R 46.453 22.914 44.055 -0.966 -0.627 1.083 "C1'" 5MU 10 5MU "C2'" C2* C 0 1 N N R 47.745 23.746 44.155 -2.088 0.419 0.900 "C2'" 5MU 11 5MU "O2'" O2* O 0 1 N N N 48.556 23.304 45.227 -3.310 -0.040 1.482 "O2'" 5MU 12 5MU "C3'" C3* C 0 1 N N S 47.172 25.138 44.395 -2.233 0.547 -0.633 "C3'" 5MU 13 5MU "C4'" C4* C 0 1 N N R 46.050 24.822 45.369 -1.184 -0.438 -1.194 "C4'" 5MU 14 5MU "O3'" O3* O 0 1 N N N 48.117 26.058 44.947 -3.547 0.169 -1.046 "O3'" 5MU 15 5MU "O4'" O4* O 0 1 N N N 45.475 23.600 44.816 -0.204 -0.572 -0.142 "O4'" 5MU 16 5MU "C5'" C5* C 0 1 N N N 44.957 25.856 45.452 -0.536 0.131 -2.457 "C5'" 5MU 17 5MU "O5'" O5* O 0 1 N N N 44.384 26.043 44.182 0.479 -0.763 -2.916 "O5'" 5MU 18 5MU P P P 0 1 N N N 43.417 27.268 43.896 1.115 -0.104 -4.240 P 5MU 19 5MU OP1 O1P O 0 1 N N N 43.450 27.563 42.437 1.692 1.217 -3.906 OP1 5MU 20 5MU OP2 O2P O 0 1 N N N 43.749 28.332 44.877 2.273 -1.065 -4.814 OP2 5MU 21 5MU OP3 O3P O 0 1 N Y N 41.922 26.780 44.356 -0.032 0.077 -5.354 OP3 5MU 22 5MU HN3 HN3 H 0 1 N N N 46.389 20.915 40.074 1.745 2.121 3.280 HN3 5MU 23 5MU H71 1H5M H 0 1 N N N 43.232 25.371 40.926 1.622 -1.346 6.216 H71 5MU 24 5MU H72 2H5M H 0 1 N N N 44.052 24.986 39.353 -0.013 -1.983 5.920 H72 5MU 25 5MU H73 3H5M H 0 1 N N N 42.743 23.988 39.858 1.389 -2.720 5.109 H73 5MU 26 5MU H6 H6 H 0 1 N N N 44.613 24.478 42.751 -0.495 -2.105 3.241 H6 5MU 27 5MU "H1'" H1* H 0 1 N N N 46.661 21.882 44.422 -1.393 -1.621 1.220 "H1'" 5MU 28 5MU "H2'" H2* H 0 1 N N N 48.415 23.682 43.266 -1.793 1.372 1.338 "H2'" 5MU 29 5MU "HO2'" *HO2 H 0 0 N N N 49.353 23.817 45.288 -3.982 0.625 1.282 "HO2'" 5MU 30 5MU "H3'" H3* H 0 1 N N N 46.851 25.652 43.459 -2.011 1.565 -0.955 "H3'" 5MU 31 5MU "H4'" H4* H 0 1 N N N 46.458 24.761 46.404 -1.646 -1.402 -1.407 "H4'" 5MU 32 5MU "HO3'" *HO3 H 0 0 N Y N 47.759 26.925 45.096 -4.157 0.818 -0.668 "HO3'" 5MU 33 5MU "H5'" 1H5* H 0 1 N N N 44.193 25.599 46.223 -1.293 0.250 -3.232 "H5'" 5MU 34 5MU "H5''" 2H5* H 0 0 N N N 45.317 26.813 45.895 -0.091 1.100 -2.232 "H5''" 5MU 35 5MU HOP2 2HOP H 0 0 N N N 43.170 29.065 44.705 2.627 -0.634 -5.604 HOP2 5MU 36 5MU HOP3 3HOP H 0 0 N N N 41.343 27.513 44.184 -0.380 -0.804 -5.543 HOP3 5MU 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5MU N1 C2 SING N N 1 5MU N1 C6 SING N N 2 5MU N1 "C1'" SING N N 3 5MU C2 N3 SING N N 4 5MU C2 O2 DOUB N N 5 5MU N3 C4 SING N N 6 5MU N3 HN3 SING N N 7 5MU C4 C5 SING N N 8 5MU C4 O4 DOUB N N 9 5MU C5 C5M SING N N 10 5MU C5 C6 DOUB N N 11 5MU C5M H71 SING N N 12 5MU C5M H72 SING N N 13 5MU C5M H73 SING N N 14 5MU C6 H6 SING N N 15 5MU "C1'" "C2'" SING N N 16 5MU "C1'" "O4'" SING N N 17 5MU "C1'" "H1'" SING N N 18 5MU "C2'" "O2'" SING N N 19 5MU "C2'" "C3'" SING N N 20 5MU "C2'" "H2'" SING N N 21 5MU "O2'" "HO2'" SING N N 22 5MU "C3'" "C4'" SING N N 23 5MU "C3'" "O3'" SING N N 24 5MU "C3'" "H3'" SING N N 25 5MU "C4'" "O4'" SING N N 26 5MU "C4'" "C5'" SING N N 27 5MU "C4'" "H4'" SING N N 28 5MU "O3'" "HO3'" SING N N 29 5MU "C5'" "O5'" SING N N 30 5MU "C5'" "H5'" SING N N 31 5MU "C5'" "H5''" SING N N 32 5MU "O5'" P SING N N 33 5MU P OP1 DOUB N N 34 5MU P OP2 SING N N 35 5MU P OP3 SING N N 36 5MU OP2 HOP2 SING N N 37 5MU OP3 HOP3 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5MU SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2O)COP(=O)(O)O" 5MU SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)NC1=O" 5MU SMILES CACTVS 3.341 "CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)NC1=O" 5MU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" 5MU SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O" 5MU InChI InChI 1.03 "InChI=1S/C10H15N2O9P/c1-4-2-12(10(16)11-8(4)15)9-7(14)6(13)5(21-9)3-20-22(17,18)19/h2,5-7,9,13-14H,3H2,1H3,(H,11,15,16)(H2,17,18,19)/t5-,6-,7-,9-/m1/s1" 5MU InChIKey InChI 1.03 IGWHDMPTQKSDTL-JXOAFFINSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5MU "SYSTEMATIC NAME" ACDLabs 10.04 ;5-methyluridine 5'-(dihydrogen phosphate) ; 5MU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5MU "Create component" 1999-07-08 RCSB 5MU "Modify descriptor" 2011-06-04 RCSB #