data_5N5 # _chem_comp.id 5N5 _chem_comp.name "5'-amino-5'-deoxyadenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-01-06 _chem_comp.pdbx_modified_date 2012-03-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.257 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5N5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3V8Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5N5 "O2'" O2* O 0 1 N N N 17.812 10.407 8.243 0.914 -2.337 -0.726 O2* 5N5 1 5N5 "C2'" C2* C 0 1 N N R 16.651 9.593 8.120 1.426 -1.004 -0.779 C2* 5N5 2 5N5 "C3'" C3* C 0 1 N N S 15.385 10.390 8.469 2.958 -0.991 -0.556 C3* 5N5 3 5N5 "O3'" O3* O 0 1 N N N 15.582 11.808 8.306 3.379 -2.192 0.095 O3* 5N5 4 5N5 "C4'" C4* C 0 1 N N R 15.178 10.032 9.937 3.197 0.228 0.355 C4* 5N5 5 5N5 "C5'" C5* C 0 1 N N N 13.712 10.239 10.336 4.153 1.209 -0.328 C5* 5N5 6 5N5 "N5'" N5* N 0 1 N N N 13.587 10.145 11.800 4.468 2.308 0.594 N5* 5N5 7 5N5 "O4'" O4* O 0 1 N N N 15.490 8.620 9.953 1.922 0.858 0.570 O4* 5N5 8 5N5 "C1'" C1* C 0 1 N N R 16.716 8.489 9.182 0.916 -0.167 0.422 C1* 5N5 9 5N5 N9 N9 N 0 1 Y N N 16.813 7.144 8.521 -0.387 0.429 0.118 N9 5N5 10 5N5 C8 C8 C 0 1 Y N N 15.836 6.505 7.858 -0.606 1.684 -0.368 C8 5N5 11 5N5 N7 N7 N 0 1 Y N N 16.288 5.330 7.411 -1.883 1.885 -0.520 N7 5N5 12 5N5 C5 C5 C 0 1 Y N N 17.561 5.213 7.791 -2.562 0.775 -0.143 C5 5N5 13 5N5 C4 C4 C 0 1 Y N N 17.893 6.365 8.497 -1.610 -0.175 0.265 C4 5N5 14 5N5 N3 N3 N 0 1 Y N N 19.136 6.498 8.998 -2.025 -1.365 0.687 N3 5N5 15 5N5 C2 C2 C 0 1 Y N N 20.037 5.539 8.810 -3.308 -1.654 0.723 C2 5N5 16 5N5 N1 N1 N 0 1 Y N N 19.757 4.429 8.138 -4.239 -0.795 0.349 N1 5N5 17 5N5 C6 C6 C 0 1 Y N N 18.535 4.229 7.621 -3.920 0.418 -0.091 C6 5N5 18 5N5 N6 N6 N 0 1 N N N 18.264 3.106 6.950 -4.903 1.309 -0.486 N6 5N5 19 5N5 H1 H1 H 0 1 N N N 18.582 9.896 8.023 1.275 -2.924 -1.405 H1 5N5 20 5N5 H2 H2 H 0 1 N N N 16.561 9.153 7.116 1.167 -0.527 -1.724 H2 5N5 21 5N5 H3 H3 H 0 1 N N N 14.537 10.031 7.868 3.481 -0.867 -1.505 H3 5N5 22 5N5 H4 H4 H 0 1 N N N 14.781 12.267 8.530 3.198 -2.997 -0.410 H4 5N5 23 5N5 H5 H5 H 0 1 N N N 15.849 10.615 10.585 3.615 -0.097 1.308 H5 5N5 24 5N5 H6 H6 H 0 1 N N N 13.377 11.232 10.002 5.071 0.689 -0.602 H6 5N5 25 5N5 H7 H7 H 0 1 N N N 13.090 9.464 9.864 3.681 1.611 -1.225 H7 5N5 26 5N5 H8 H8 H 0 1 N N N 12.632 10.280 12.063 4.847 1.955 1.460 H8 5N5 27 5N5 H9 H9 H 0 1 N N N 13.892 9.242 12.103 5.098 2.969 0.166 H9 5N5 28 5N5 H11 H11 H 0 1 N N N 17.594 8.652 9.825 0.859 -0.781 1.320 H11 5N5 29 5N5 H12 H12 H 0 1 N N N 14.836 6.884 7.709 0.166 2.405 -0.592 H12 5N5 30 5N5 H13 H13 H 0 1 N N N 21.029 5.667 9.217 -3.612 -2.631 1.070 H13 5N5 31 5N5 H14 H14 H 0 1 N N N 19.078 2.526 6.927 -4.657 2.192 -0.803 H14 5N5 32 5N5 H15 H15 H 0 1 N N N 17.520 2.617 7.405 -5.837 1.050 -0.445 H15 5N5 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5N5 N6 C6 SING N N 1 5N5 N7 C5 SING Y N 2 5N5 N7 C8 DOUB Y N 3 5N5 C6 C5 DOUB Y N 4 5N5 C6 N1 SING Y N 5 5N5 C5 C4 SING Y N 6 5N5 C8 N9 SING Y N 7 5N5 "C2'" "O2'" SING N N 8 5N5 "C2'" "C3'" SING N N 9 5N5 "C2'" "C1'" SING N N 10 5N5 N1 C2 DOUB Y N 11 5N5 "O3'" "C3'" SING N N 12 5N5 "C3'" "C4'" SING N N 13 5N5 C4 N9 SING Y N 14 5N5 C4 N3 DOUB Y N 15 5N5 N9 "C1'" SING N N 16 5N5 C2 N3 SING Y N 17 5N5 "C1'" "O4'" SING N N 18 5N5 "C4'" "O4'" SING N N 19 5N5 "C4'" "C5'" SING N N 20 5N5 "C5'" "N5'" SING N N 21 5N5 "O2'" H1 SING N N 22 5N5 "C2'" H2 SING N N 23 5N5 "C3'" H3 SING N N 24 5N5 "O3'" H4 SING N N 25 5N5 "C4'" H5 SING N N 26 5N5 "C5'" H6 SING N N 27 5N5 "C5'" H7 SING N N 28 5N5 "N5'" H8 SING N N 29 5N5 "N5'" H9 SING N N 30 5N5 "C1'" H11 SING N N 31 5N5 C8 H12 SING N N 32 5N5 C2 H13 SING N N 33 5N5 N6 H14 SING N N 34 5N5 N6 H15 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5N5 SMILES ACDLabs 12.01 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CN)N" 5N5 InChI InChI 1.03 "InChI=1S/C10H14N6O3/c11-1-4-6(17)7(18)10(19-4)16-3-15-5-8(12)13-2-14-9(5)16/h2-4,6-7,10,17-18H,1,11H2,(H2,12,13,14)/t4-,6-,7-,10-/m1/s1" 5N5 InChIKey InChI 1.03 GVSGUDGNTHCZHI-KQYNXXCUSA-N 5N5 SMILES_CANONICAL CACTVS 3.370 "NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 5N5 SMILES CACTVS 3.370 "NC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 5N5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN)O)O)N" 5N5 SMILES "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5N5 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-amino-5'-deoxyadenosine" 5N5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4R,5R)-2-(aminomethyl)-5-(6-aminopurin-9-yl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5N5 "Create component" 2012-01-06 RCSB #