data_5ND # _chem_comp.id 5ND _chem_comp.name "5-(2-NAPHTHYLMETHYL)-D-HYDANTOIN" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H12 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-05-01 _chem_comp.pdbx_modified_date 2014-06-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 240.257 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5ND _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4D1D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5ND N10 N10 N 0 1 N N N 4.047 11.800 -24.141 1.896 0.851 -0.547 N10 5ND 1 5ND CA CA C 0 1 N N R 2.853 11.317 -24.754 2.082 -0.595 -0.332 CA 5ND 2 5ND CB CB C 0 1 N N N 3.045 9.902 -25.199 1.203 -1.085 0.820 CB 5ND 3 5ND CG CG C 0 1 Y N N 2.833 8.989 -24.043 -0.248 -0.935 0.443 CG 5ND 4 5ND CD1 CD1 C 0 1 Y N N 2.068 9.398 -22.959 -0.902 -1.985 -0.200 CD1 5ND 5 5ND CE1 CE1 C 0 1 Y N N 1.877 8.556 -21.879 -2.212 -1.882 -0.554 CE1 5ND 6 5ND CZ CZ C 0 1 Y N N 2.451 7.297 -21.869 -2.919 -0.701 -0.269 CZ 5ND 7 5ND CE2 CE2 C 0 1 Y N N 3.218 6.880 -22.944 -2.254 0.366 0.385 CE2 5ND 8 5ND CD2 CD2 C 0 1 Y N N 3.406 7.727 -24.027 -0.902 0.221 0.739 CD2 5ND 9 5ND C C C 0 1 N N N 2.565 12.163 -25.916 3.550 -0.715 0.029 C 5ND 10 5ND N11 N11 N 0 1 N N N 3.579 13.156 -26.000 4.038 0.541 -0.004 N11 5ND 11 5ND C2 C2 C 0 1 N N N 4.505 12.947 -24.901 3.092 1.429 -0.333 C2 5ND 12 5ND O2 O2 O 0 1 N N N 5.502 13.618 -24.663 3.292 2.624 -0.427 O2 5ND 13 5ND O3 O3 O 0 1 N N N 1.618 12.036 -26.678 4.158 -1.730 0.293 O3 5ND 14 5ND C1 C1 C 0 1 Y N N 3.794 5.622 -22.936 -2.961 1.546 0.670 C1 5ND 15 5ND C3 C3 C 0 1 Y N N 3.603 4.783 -21.854 -4.271 1.649 0.316 C3 5ND 16 5ND C5 C5 C 0 1 Y N N 2.834 5.200 -20.778 -4.925 0.599 -0.327 C5 5ND 17 5ND C6 C6 C 0 1 Y N N 2.259 6.455 -20.785 -4.273 -0.558 -0.620 C6 5ND 18 5ND H10 H10 H 0 1 N N N 4.490 11.416 -23.331 1.073 1.298 -0.798 H10 5ND 19 5ND HA HA H 0 1 N N N 2.014 11.364 -24.044 1.863 -1.149 -1.244 HA 5ND 20 5ND HB1C HB1C H 0 0 N N N 2.321 9.665 -25.992 1.420 -2.134 1.021 HB1C 5ND 21 5ND HB2C HB2C H 0 0 N N N 4.067 9.774 -25.586 1.409 -0.493 1.712 HB2C 5ND 22 5ND HD1 HD1 H 0 1 N N N 1.619 10.380 -22.959 -0.361 -2.893 -0.420 HD1 5ND 23 5ND HD2 HD2 H 0 1 N N N 4.004 7.400 -24.865 -0.384 1.024 1.242 HD2 5ND 24 5ND HE1 HE1 H 0 1 N N N 1.278 8.882 -21.041 -2.706 -2.704 -1.052 HE1 5ND 25 5ND H6 H6 H 0 1 N N N 1.660 6.780 -19.947 -4.792 -1.363 -1.119 H6 5ND 26 5ND H1 H1 H 0 1 N N N 4.392 5.296 -23.774 -2.468 2.368 1.168 H1 5ND 27 5ND H11 H11 H 0 1 N N N 3.643 13.873 -26.694 4.960 0.772 0.186 H11 5ND 28 5ND H3 H3 H 0 1 N N N 4.053 3.801 -21.847 -4.812 2.557 0.536 H3 5ND 29 5ND H5 H5 H 0 1 N N N 2.685 4.543 -19.934 -5.966 0.706 -0.597 H5 5ND 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5ND N10 CA SING N N 1 5ND N10 C2 SING N N 2 5ND CA CB SING N N 3 5ND CA C SING N N 4 5ND CB CG SING N N 5 5ND CG CD1 SING Y N 6 5ND CG CD2 DOUB Y N 7 5ND CD1 CE1 DOUB Y N 8 5ND CE1 CZ SING Y N 9 5ND CZ CE2 DOUB Y N 10 5ND CZ C6 SING Y N 11 5ND CE2 CD2 SING Y N 12 5ND CE2 C1 SING Y N 13 5ND C N11 SING N N 14 5ND C O3 DOUB N N 15 5ND N11 C2 SING N N 16 5ND C2 O2 DOUB N N 17 5ND C1 C3 DOUB Y N 18 5ND C3 C5 SING Y N 19 5ND C5 C6 DOUB Y N 20 5ND N10 H10 SING N N 21 5ND CA HA SING N N 22 5ND CB HB1C SING N N 23 5ND CB HB2C SING N N 24 5ND CD1 HD1 SING N N 25 5ND CD2 HD2 SING N N 26 5ND CE1 HE1 SING N N 27 5ND C6 H6 SING N N 28 5ND C1 H1 SING N N 29 5ND N11 H11 SING N N 30 5ND C3 H3 SING N N 31 5ND C5 H5 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5ND SMILES ACDLabs 12.01 "O=C1NC(=O)C(N1)Cc2ccc3c(c2)cccc3" 5ND InChI InChI 1.03 "InChI=1S/C14H12N2O2/c17-13-12(15-14(18)16-13)8-9-5-6-10-3-1-2-4-11(10)7-9/h1-7,12H,8H2,(H2,15,16,17,18)/t12-/m1/s1" 5ND InChIKey InChI 1.03 CHRJCAZBQNADBP-GFCCVEGCSA-N 5ND SMILES_CANONICAL CACTVS 3.385 "O=C1N[C@H](Cc2ccc3ccccc3c2)C(=O)N1" 5ND SMILES CACTVS 3.385 "O=C1N[CH](Cc2ccc3ccccc3c2)C(=O)N1" 5ND SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2cc(ccc2c1)C[C@@H]3C(=O)NC(=O)N3" 5ND SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc2cc(ccc2c1)CC3C(=O)NC(=O)N3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5ND "SYSTEMATIC NAME" ACDLabs 12.01 "(5R)-5-(naphthalen-2-ylmethyl)imidazolidine-2,4-dione" 5ND "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(5R)-5-(naphthalen-2-ylmethyl)imidazolidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5ND "Create component" 2014-05-01 EBI 5ND "Initial release" 2014-07-02 RCSB #