data_5NM # _chem_comp.id 5NM _chem_comp.name "3-[[5-bromanyl-1-(3-methylsulfonylpropyl)benzimidazol-2-yl]methyl]-1-cyclopropyl-imidazo[4,5-c]pyridin-2-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H22 Br N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms JNJ-49153390 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-10-27 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.400 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5NM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EA4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5NM C10 C1 C 0 1 N N N 19.905 19.767 18.379 -1.554 0.164 -1.500 C10 5NM 1 5NM C13 C2 C 0 1 N N N 19.282 14.720 18.151 -4.919 1.735 1.807 C13 5NM 2 5NM C15 C3 C 0 1 N N N 17.955 14.542 17.427 -6.133 0.812 1.681 C15 5NM 3 5NM C22 C4 C 0 1 Y N N 20.735 15.486 20.964 -3.990 4.173 -0.084 C22 5NM 4 5NM C24 C5 C 0 1 Y N N 21.115 18.429 21.153 -2.139 3.306 -1.903 C24 5NM 5 5NM C26 C6 C 0 1 N N N 16.207 18.280 19.148 0.086 -2.991 -0.185 C26 5NM 6 5NM C28 C7 C 0 1 Y N N 15.527 22.110 22.284 3.862 0.110 1.144 C28 5NM 7 5NM C01 C8 C 0 1 N N N 19.405 17.302 17.873 -3.254 0.674 0.267 C01 5NM 8 5NM N02 N1 N 0 1 N N N 19.921 18.367 18.700 -2.464 1.042 -0.760 N02 5NM 9 5NM N03 N2 N 0 1 N N N 19.623 16.055 18.576 -3.955 1.738 0.705 N03 5NM 10 5NM C04 C9 C 0 1 Y N N 19.001 20.427 19.421 -0.167 0.278 -0.924 C04 5NM 11 5NM N05 N3 N 0 1 Y N N 19.396 21.227 20.461 0.697 1.200 -1.237 N05 5NM 12 5NM C06 C10 C 0 1 Y N N 20.449 17.790 19.917 -2.661 2.399 -0.998 C06 5NM 13 5NM C07 C11 C 0 1 Y N N 20.266 16.364 19.840 -3.608 2.837 -0.065 C07 5NM 14 5NM N08 N4 N 0 1 Y N N 17.626 20.292 19.463 0.366 -0.568 -0.002 N08 5NM 15 5NM C09 C12 C 0 1 Y N N 18.281 21.599 21.150 1.842 1.010 -0.533 C09 5NM 16 5NM C11 C13 C 0 1 Y N N 17.177 21.013 20.529 1.647 -0.128 0.268 C11 5NM 17 5NM S12 S1 S 0 1 N N N 14.272 16.375 18.929 -0.152 -5.699 -0.486 S12 5NM 18 5NM C14 C14 C 0 1 N N N 19.267 14.421 16.659 -5.010 0.469 2.663 C14 5NM 19 5NM C16 C15 C 0 1 Y N N 18.086 22.501 22.411 3.065 1.685 -0.484 C16 5NM 20 5NM O17 O1 O 0 1 N N N 18.884 17.458 16.779 -3.325 -0.449 0.730 O17 5NM 21 5NM C18 C16 C 0 1 Y N N 15.725 21.250 21.069 2.664 -0.570 1.103 C18 5NM 22 5NM O19 O2 O 0 1 N N N 13.713 16.698 20.220 -0.683 -5.597 -1.800 O19 5NM 23 5NM O20 O3 O 0 1 N N N 15.230 15.349 19.260 1.240 -5.931 -0.316 O20 5NM 24 5NM N21 N5 N 0 1 Y N N 21.578 17.574 22.264 -2.527 4.568 -1.882 N21 5NM 25 5NM C23 C17 C 0 1 Y N N 16.704 22.728 22.944 4.060 1.235 0.355 C23 5NM 26 5NM C25 C18 C 0 1 N N N 16.830 19.534 18.519 -0.296 -1.731 0.595 C25 5NM 27 5NM C27 C19 C 0 1 N N N 15.077 17.801 18.211 -0.605 -4.205 0.438 C27 5NM 28 5NM C29 C20 C 0 1 N N N 13.018 15.788 17.796 -1.066 -6.985 0.409 C29 5NM 29 5NM BR3 BR1 BR 0 0 N N N 16.471 23.824 24.490 5.710 2.157 0.432 BR3 5NM 30 5NM C31 C21 C 0 1 Y N N 21.395 16.107 22.190 -3.422 5.014 -1.020 C31 5NM 31 5NM H1 H1 H 0 1 N N N 20.921 20.184 18.436 -1.898 -0.867 -1.418 H1 5NM 32 5NM H2 H2 H 0 1 N N N 19.500 19.923 17.368 -1.538 0.459 -2.549 H2 5NM 33 5NM H3 H3 H 0 1 N N N 19.587 13.888 18.803 -5.065 2.692 2.308 H3 5NM 34 5NM H4 H4 H 0 1 N N N 17.298 15.409 17.261 -7.077 1.162 2.098 H4 5NM 35 5NM H5 H5 H 0 1 N N N 17.342 13.648 17.613 -6.214 0.208 0.777 H5 5NM 36 5NM H6 H6 H 0 1 N N N 20.605 14.416 20.904 -4.721 4.545 0.618 H6 5NM 37 5NM H7 H7 H 0 1 N N N 21.242 19.500 21.206 -1.404 2.983 -2.625 H7 5NM 38 5NM H8 H8 H 0 1 N N N 15.795 18.522 20.139 -0.229 -2.886 -1.223 H8 5NM 39 5NM H9 H9 H 0 1 N N N 16.969 17.493 19.250 1.167 -3.128 -0.145 H9 5NM 40 5NM H10 H10 H 0 1 N N N 14.534 22.278 22.675 4.650 -0.232 1.799 H10 5NM 41 5NM H11 H11 H 0 1 N N N 19.601 13.439 16.291 -4.352 -0.361 2.405 H11 5NM 42 5NM H12 H12 H 0 1 N N N 19.557 15.200 15.939 -5.215 0.594 3.726 H12 5NM 43 5NM H13 H13 H 0 1 N N N 18.938 22.956 22.893 3.226 2.560 -1.095 H13 5NM 44 5NM H14 H14 H 0 1 N N N 14.877 20.800 20.573 2.516 -1.444 1.720 H14 5NM 45 5NM H15 H15 H 0 1 N N N 17.474 19.226 17.682 -1.377 -1.593 0.555 H15 5NM 46 5NM H16 H16 H 0 1 N N N 16.022 20.178 18.142 0.020 -1.836 1.633 H16 5NM 47 5NM H17 H17 H 0 1 N N N 15.502 17.529 17.234 -0.290 -4.310 1.476 H17 5NM 48 5NM H18 H18 H 0 1 N N N 14.342 18.609 18.079 -1.686 -4.068 0.399 H18 5NM 49 5NM H19 H19 H 0 1 N N N 12.515 14.910 18.227 -0.737 -7.008 1.448 H19 5NM 50 5NM H20 H20 H 0 1 N N N 12.279 16.584 17.622 -2.133 -6.766 0.371 H20 5NM 51 5NM H21 H21 H 0 1 N N N 13.488 15.509 16.841 -0.877 -7.954 -0.053 H21 5NM 52 5NM H22 H22 H 0 1 N N N 21.728 15.478 23.002 -3.714 6.053 -1.047 H22 5NM 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5NM C14 C15 SING N N 1 5NM C14 C13 SING N N 2 5NM O17 C01 DOUB N N 3 5NM C15 C13 SING N N 4 5NM C29 S12 SING N N 5 5NM C01 N03 SING N N 6 5NM C01 N02 SING N N 7 5NM C13 N03 SING N N 8 5NM C27 S12 SING N N 9 5NM C27 C26 SING N N 10 5NM C10 N02 SING N N 11 5NM C10 C04 SING N N 12 5NM C25 C26 SING N N 13 5NM C25 N08 SING N N 14 5NM N03 C07 SING N N 15 5NM N02 C06 SING N N 16 5NM S12 O20 DOUB N N 17 5NM S12 O19 DOUB N N 18 5NM C04 N08 SING Y N 19 5NM C04 N05 DOUB Y N 20 5NM N08 C11 SING Y N 21 5NM C07 C06 DOUB Y N 22 5NM C07 C22 SING Y N 23 5NM C06 C24 SING Y N 24 5NM N05 C09 SING Y N 25 5NM C11 C18 DOUB Y N 26 5NM C11 C09 SING Y N 27 5NM C22 C31 DOUB Y N 28 5NM C18 C28 SING Y N 29 5NM C09 C16 DOUB Y N 30 5NM C24 N21 DOUB Y N 31 5NM C31 N21 SING Y N 32 5NM C28 C23 DOUB Y N 33 5NM C16 C23 SING Y N 34 5NM C23 BR3 SING N N 35 5NM C10 H1 SING N N 36 5NM C10 H2 SING N N 37 5NM C13 H3 SING N N 38 5NM C15 H4 SING N N 39 5NM C15 H5 SING N N 40 5NM C22 H6 SING N N 41 5NM C24 H7 SING N N 42 5NM C26 H8 SING N N 43 5NM C26 H9 SING N N 44 5NM C28 H10 SING N N 45 5NM C14 H11 SING N N 46 5NM C14 H12 SING N N 47 5NM C16 H13 SING N N 48 5NM C18 H14 SING N N 49 5NM C25 H15 SING N N 50 5NM C25 H16 SING N N 51 5NM C27 H17 SING N N 52 5NM C27 H18 SING N N 53 5NM C29 H19 SING N N 54 5NM C29 H20 SING N N 55 5NM C29 H21 SING N N 56 5NM C31 H22 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5NM InChI InChI 1.03 "InChI=1S/C21H22BrN5O3S/c1-31(29,30)10-2-9-25-17-6-3-14(22)11-16(17)24-20(25)13-26-19-12-23-8-7-18(19)27(21(26)28)15-4-5-15/h3,6-8,11-12,15H,2,4-5,9-10,13H2,1H3" 5NM InChIKey InChI 1.03 WHMBFIMJAWFSJJ-UHFFFAOYSA-N 5NM SMILES_CANONICAL CACTVS 3.385 "C[S](=O)(=O)CCCn1c(CN2C(=O)N(C3CC3)c4ccncc24)nc5cc(Br)ccc15" 5NM SMILES CACTVS 3.385 "C[S](=O)(=O)CCCn1c(CN2C(=O)N(C3CC3)c4ccncc24)nc5cc(Br)ccc15" 5NM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CS(=O)(=O)CCCn1c2ccc(cc2nc1CN3c4cnccc4N(C3=O)C5CC5)Br" 5NM SMILES "OpenEye OEToolkits" 2.0.4 "CS(=O)(=O)CCCn1c2ccc(cc2nc1CN3c4cnccc4N(C3=O)C5CC5)Br" # _pdbx_chem_comp_identifier.comp_id 5NM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.4 _pdbx_chem_comp_identifier.identifier "3-[[5-bromanyl-1-(3-methylsulfonylpropyl)benzimidazol-2-yl]methyl]-1-cyclopropyl-imidazo[4,5-c]pyridin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5NM "Create component" 2015-10-27 RCSB 5NM "Initial release" 2015-12-09 RCSB 5NM "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5NM _pdbx_chem_comp_synonyms.name JNJ-49153390 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##