data_5NX # _chem_comp.id 5NX _chem_comp.name "3-[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(3-chlorophenyl)methyl]-6-oxidanylidene-1~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-4-oxidanyl-cyclobut-3-ene-1,2-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H20 Cl N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2015-10-28 _chem_comp.pdbx_modified_date 2016-09-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.873 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5NX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EHC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5NX C4 C1 C 0 1 Y N N 4.433 -10.054 -3.930 1.822 -1.911 -0.044 C4 5NX 1 5NX C5 C2 C 0 1 Y N N 4.046 -10.816 -4.976 2.631 -0.997 0.639 C5 5NX 2 5NX C6 C3 C 0 1 N N N 2.753 -11.120 -5.144 4.021 -1.249 0.718 C6 5NX 3 5NX C8 C4 C 0 1 Y N N 6.191 -10.578 -5.042 0.596 -0.258 0.745 C8 5NX 4 5NX N1 N1 N 0 1 N N N 1.781 -10.663 -4.227 4.504 -2.365 0.129 N1 5NX 5 5NX N2 N2 N 0 1 N N N 1.326 -9.359 -2.298 4.185 -4.344 -1.112 N2 5NX 6 5NX N3 N3 N 0 1 N N N 3.516 -9.579 -3.056 2.373 -2.995 -0.604 N3 5NX 7 5NX CAL C5 C 0 1 Y N N 5.516 -13.987 -5.526 4.057 2.290 0.544 CAL 5NX 8 5NX CAU C6 C 0 1 Y N N 5.525 -15.375 -5.419 4.486 3.281 -0.321 CAU 5NX 9 5NX CL CL1 CL 0 0 N N N 5.828 -16.114 -3.890 6.151 3.346 -0.809 CL 5NX 10 5NX CAJ C7 C 0 1 Y N N 5.290 -16.170 -6.537 3.588 4.219 -0.797 CAJ 5NX 11 5NX CAI C8 C 0 1 Y N N 5.044 -15.589 -7.777 2.263 4.166 -0.408 CAI 5NX 12 5NX CAK C9 C 0 1 Y N N 5.037 -14.201 -7.875 1.835 3.176 0.456 CAK 5NX 13 5NX CAV C10 C 0 1 Y N N 5.271 -13.399 -6.760 2.731 2.235 0.928 CAV 5NX 14 5NX CAO C11 C 0 1 N N N 5.251 -11.994 -6.924 2.263 1.155 1.870 CAO 5NX 15 5NX N7 N4 N 1 1 Y N N 5.149 -11.158 -5.654 1.823 -0.010 1.098 N7 5NX 16 5NX O6 O1 O 0 1 N N N 2.397 -11.819 -6.091 4.763 -0.479 1.303 O6 5NX 17 5NX C2 C12 C 0 1 N N N 2.197 -9.820 -3.191 3.665 -3.218 -0.523 C2 5NX 18 5NX N9 N5 N 0 1 Y N N 5.767 -9.866 -3.992 0.545 -1.427 0.041 N9 5NX 19 5NX CBG C13 C 0 1 N N R 6.643 -9.161 -3.013 -0.656 -2.044 -0.526 CBG 5NX 20 5NX OAS O2 O 0 1 N N N 8.048 -9.108 -3.381 -1.719 -1.074 -0.645 OAS 5NX 21 5NX CBE C14 C 0 1 N N R 6.714 -10.026 -1.765 -1.238 -3.101 0.446 CBE 5NX 22 5NX OAG O3 O 0 1 N N N 7.158 -9.236 -0.655 -0.614 -4.372 0.252 OAG 5NX 23 5NX CBD C15 C 0 1 N N S 7.788 -11.042 -2.135 -2.727 -3.147 0.023 CBD 5NX 24 5NX OAF O4 O 0 1 N N N 8.284 -11.675 -0.950 -2.962 -4.245 -0.861 OAF 5NX 25 5NX CBF C16 C 0 1 N N R 8.850 -10.130 -2.711 -2.953 -1.809 -0.708 CBF 5NX 26 5NX CAN C17 C 0 1 N N N 9.856 -10.873 -3.655 -4.064 -1.019 -0.014 CAN 5NX 27 5NX NAQ N6 N 0 1 N N N 9.772 -10.344 -5.032 -4.343 0.203 -0.773 NAQ 5NX 28 5NX CAX C18 C 0 1 N N N 10.713 -10.462 -5.967 -5.308 1.074 -0.340 CAX 5NX 29 5NX CBA C19 C 0 1 N N N 11.307 -9.570 -6.852 -6.238 1.118 0.802 CBA 5NX 30 5NX OAD O5 O 0 1 N N N 11.172 -8.373 -7.102 -6.467 0.395 1.753 OAD 5NX 31 5NX CAZ C20 C 0 1 N N N 12.113 -10.589 -7.338 -6.776 2.410 0.310 CAZ 5NX 32 5NX OAC O6 O 0 1 N N N 12.984 -10.671 -8.202 -7.626 3.206 0.664 OAC 5NX 33 5NX CAW C21 C 0 1 N N N 11.522 -11.483 -6.450 -5.816 2.295 -0.795 CAW 5NX 34 5NX OAE O7 O 0 1 N N N 11.672 -12.806 -6.173 -5.532 3.077 -1.859 OAE 5NX 35 5NX H1 H1 H 0 1 N N N 7.222 -10.672 -5.351 -0.256 0.363 0.979 H1 5NX 36 5NX H2 H2 H 0 1 N N N 0.823 -10.934 -4.316 5.454 -2.559 0.170 H2 5NX 37 5NX H3 H3 H 0 1 N N N 1.647 -8.827 -1.515 5.137 -4.522 -1.061 H3 5NX 38 5NX H4 H4 H 0 1 N N N 0.350 -9.545 -2.410 3.601 -4.960 -1.580 H4 5NX 39 5NX H5 H5 H 0 1 N N N 5.698 -13.373 -4.657 4.758 1.556 0.916 H5 5NX 40 5NX H6 H6 H 0 1 N N N 5.299 -17.246 -6.441 3.922 4.993 -1.472 H6 5NX 41 5NX H7 H7 H 0 1 N N N 4.862 -16.203 -8.646 1.561 4.899 -0.779 H7 5NX 42 5NX H8 H8 H 0 1 N N N 4.847 -13.737 -8.832 0.799 3.135 0.761 H8 5NX 43 5NX H9 H9 H 0 1 N N N 6.179 -11.705 -7.439 3.083 0.866 2.527 H9 5NX 44 5NX H10 H10 H 0 1 N N N 4.387 -11.745 -7.557 1.433 1.529 2.468 H10 5NX 45 5NX H11 H11 H 0 1 N N N 6.247 -8.163 -2.773 -0.434 -2.494 -1.494 H11 5NX 46 5NX H12 H12 H 0 1 N N N 5.751 -10.521 -1.570 -1.138 -2.774 1.481 H12 5NX 47 5NX H13 H13 H 0 1 N N N 7.201 -9.779 0.123 -0.945 -5.066 0.838 H13 5NX 48 5NX H14 H14 H 0 1 N N N 7.422 -11.760 -2.883 -3.371 -3.219 0.899 H14 5NX 49 5NX H15 H15 H 0 1 N N N 7.615 -12.246 -0.592 -2.778 -5.110 -0.471 H15 5NX 50 5NX H16 H16 H 0 1 N N N 9.419 -9.675 -1.887 -3.221 -1.995 -1.748 H16 5NX 51 5NX H17 H17 H 0 1 N N N 9.615 -11.946 -3.666 -4.967 -1.629 0.036 H17 5NX 52 5NX H18 H18 H 0 1 N N N 10.879 -10.731 -3.276 -3.748 -0.756 0.995 H18 5NX 53 5NX H19 H19 H 0 1 N N N 9.625 -9.360 -4.928 -3.843 0.395 -1.583 H19 5NX 54 5NX H20 H20 H 0 1 N N N 11.070 -13.056 -5.482 -6.068 3.880 -1.912 H20 5NX 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5NX OAC CAZ DOUB N N 1 5NX CAK CAI DOUB Y N 2 5NX CAK CAV SING Y N 3 5NX CAI CAJ SING Y N 4 5NX CAZ CBA SING N N 5 5NX CAZ CAW SING N N 6 5NX OAD CBA DOUB N N 7 5NX CAO CAV SING N N 8 5NX CAO N7 SING N N 9 5NX CBA CAX SING N N 10 5NX CAV CAL DOUB Y N 11 5NX CAJ CAU DOUB Y N 12 5NX CAW OAE SING N N 13 5NX CAW CAX DOUB N N 14 5NX O6 C6 DOUB N N 15 5NX CAX NAQ SING N N 16 5NX N7 C8 DOUB Y N 17 5NX N7 C5 SING Y N 18 5NX CAL CAU SING Y N 19 5NX CAU CL SING N N 20 5NX C6 C5 SING N N 21 5NX C6 N1 SING N N 22 5NX C8 N9 SING Y N 23 5NX NAQ CAN SING N N 24 5NX C5 C4 DOUB Y N 25 5NX N1 C2 SING N N 26 5NX N9 C4 SING Y N 27 5NX N9 CBG SING N N 28 5NX C4 N3 SING N N 29 5NX CAN CBF SING N N 30 5NX OAS CBG SING N N 31 5NX OAS CBF SING N N 32 5NX C2 N3 DOUB N N 33 5NX C2 N2 SING N N 34 5NX CBG CBE SING N N 35 5NX CBF CBD SING N N 36 5NX CBD CBE SING N N 37 5NX CBD OAF SING N N 38 5NX CBE OAG SING N N 39 5NX C8 H1 SING N N 40 5NX N1 H2 SING N N 41 5NX N2 H3 SING N N 42 5NX N2 H4 SING N N 43 5NX CAL H5 SING N N 44 5NX CAJ H6 SING N N 45 5NX CAI H7 SING N N 46 5NX CAK H8 SING N N 47 5NX CAO H9 SING N N 48 5NX CAO H10 SING N N 49 5NX CBG H11 SING N N 50 5NX CBE H12 SING N N 51 5NX OAG H13 SING N N 52 5NX CBD H14 SING N N 53 5NX OAF H15 SING N N 54 5NX CBF H16 SING N N 55 5NX CAN H17 SING N N 56 5NX CAN H18 SING N N 57 5NX NAQ H19 SING N N 58 5NX OAE H20 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5NX InChI InChI 1.03 "InChI=1S/C21H19ClN6O7/c22-9-3-1-2-8(4-9)6-27-7-28(18-12(27)19(34)26-21(23)25-18)20-17(33)13(29)10(35-20)5-24-11-14(30)16(32)15(11)31/h1-4,7,10,13,17,20,29,33H,5-6H2,(H4-,23,24,25,26,30,31,32,34)/p+1/t10-,13-,17-,20-/m1/s1" 5NX InChIKey InChI 1.03 IHSJKXMUPLBBMG-PRXMSPFESA-O 5NX SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(c[n+](Cc3cccc(Cl)c3)c2C(=O)N1)[C@@H]4O[C@H](CNC5=C(O)C(=O)C5=O)[C@@H](O)[C@H]4O" 5NX SMILES CACTVS 3.385 "NC1=Nc2n(c[n+](Cc3cccc(Cl)c3)c2C(=O)N1)[CH]4O[CH](CNC5=C(O)C(=O)C5=O)[CH](O)[CH]4O" 5NX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1cc(cc(c1)Cl)C[n+]2cn(c3c2C(=O)NC(=N3)N)[C@H]4[C@@H]([C@@H]([C@H](O4)CNC5=C(C(=O)C5=O)O)O)O" 5NX SMILES "OpenEye OEToolkits" 2.0.4 "c1cc(cc(c1)Cl)C[n+]2cn(c3c2C(=O)NC(=N3)N)C4C(C(C(O4)CNC5=C(C(=O)C5=O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5NX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "3-[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(3-chlorophenyl)methyl]-6-oxidanylidene-1~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-4-oxidanyl-cyclobut-3-ene-1,2-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5NX "Create component" 2015-10-28 EBI 5NX "Initial release" 2016-09-07 RCSB #