data_5OH # _chem_comp.id 5OH _chem_comp.name "(2S)-amino[(4R,6S)-2-amino-6-hydroxy-3,4,5,6-tetrahydropyrimidin-4-yl]ethanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N4 O3" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-02-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 188.184 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5OH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3KNH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5OH C C C 0 1 N N N Y N Y 103.111 9.615 23.716 2.360 -0.136 0.175 C 5OH 1 5OH N N N 0 1 N N N Y Y N 104.822 8.173 24.733 1.369 2.055 0.526 N 5OH 2 5OH O O O 0 1 N N N Y N Y 102.862 10.803 23.515 3.364 0.442 -0.167 O 5OH 3 5OH CA CA C 0 1 N N S Y N N 103.782 9.156 25.016 1.072 0.627 0.348 CA 5OH 4 5OH CB CB C 0 1 N N R N N N 104.318 10.379 25.769 0.197 0.438 -0.893 CB 5OH 5 5OH NP NP N 0 1 N N N N N N 105.453 10.976 25.050 -1.020 1.255 -0.775 NP 5OH 6 5OH CQ CQ C 0 1 N N N N N N 106.778 10.662 25.381 -2.035 0.814 0.041 CQ 5OH 7 5OH NQ NQ N 0 1 N N N N N N 107.776 11.249 24.726 -3.049 1.683 0.368 NQ 5OH 8 5OH CR CR C 0 1 N N N N N N 104.750 10.042 27.199 -0.243 -1.029 -1.003 CR 5OH 9 5OH NR NR N 0 1 N N N N N N 107.057 9.757 26.412 -2.069 -0.390 0.512 NR 5OH 10 5OH CS CS C 0 1 N N S N N N 105.965 9.118 27.164 -1.041 -1.391 0.251 CS 5OH 11 5OH OS OS O 0 1 N N N N N N 106.392 8.845 28.501 -1.661 -2.665 0.064 OS 5OH 12 5OH OXT OXT O 0 1 N Y N Y N Y 102.769 8.646 22.721 2.391 -1.460 0.396 OXT 5OH 13 5OH H HN H 0 1 N N N Y Y N 105.250 7.884 25.589 1.892 2.212 1.374 HN 5OH 14 5OH H2 HNA H 0 1 N Y N Y Y N 104.416 7.380 24.279 1.860 2.424 -0.275 HNA 5OH 15 5OH HA HA H 0 1 N N N Y N N 103.046 8.658 25.664 0.544 0.254 1.225 HA 5OH 16 5OH HP HP H 0 1 N N N N N N 103.489 11.099 25.824 0.753 0.727 -1.785 HP 5OH 17 5OH HNP HNP H 0 1 N N N N N N 105.275 11.621 24.307 -1.106 2.089 -1.263 HNP 5OH 18 5OH HNQ HNQ H 0 1 N N N N N N 108.724 11.044 24.970 -3.041 2.590 0.023 HNQ 5OH 19 5OH HNQA HNQA H 0 0 N N N N N N 107.579 11.896 23.989 -3.774 1.389 0.942 HNQA 5OH 20 5OH HR HR H 0 1 N N N N N N 105.011 10.969 27.730 -0.870 -1.158 -1.886 HR 5OH 21 5OH HRA HRA H 0 1 N N N N N N 103.923 9.539 27.722 0.635 -1.670 -1.081 HRA 5OH 22 5OH HS HS H 0 1 N N N N N N 105.693 8.175 26.667 -0.366 -1.442 1.105 HS 5OH 23 5OH HOS HOS H 0 1 N N N N N N 105.684 8.433 28.982 -2.172 -2.969 0.826 HOS 5OH 24 5OH HXT HXT H 0 1 N Y N Y N Y 102.364 9.082 21.980 3.240 -1.906 0.272 HXT 5OH 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5OH C CA SING N N 1 5OH C OXT SING N N 2 5OH N CA SING N N 3 5OH N H SING N N 4 5OH N H2 SING N N 5 5OH O C DOUB N N 6 5OH CA CB SING N N 7 5OH CA HA SING N N 8 5OH CB CR SING N N 9 5OH CB HP SING N N 10 5OH NP CB SING N N 11 5OH NP CQ SING N N 12 5OH NP HNP SING N N 13 5OH CQ NR DOUB N N 14 5OH NQ CQ SING N N 15 5OH NQ HNQ SING N N 16 5OH NQ HNQA SING N N 17 5OH CR HR SING N N 18 5OH CR HRA SING N N 19 5OH NR CS SING N N 20 5OH CS CR SING N N 21 5OH CS OS SING N N 22 5OH CS HS SING N N 23 5OH OS HOS SING N N 24 5OH OXT HXT SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5OH SMILES_CANONICAL CACTVS 3.352 "N[C@@H]([C@H]1C[C@H](O)N=C(N)N1)C(O)=O" 5OH SMILES CACTVS 3.352 "N[CH]([CH]1C[CH](O)N=C(N)N1)C(O)=O" 5OH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@@H](NC(=N[C@H]1O)N)[C@@H](C(=O)O)N" 5OH SMILES "OpenEye OEToolkits" 1.7.0 "C1C(NC(=NC1O)N)C(C(=O)O)N" 5OH InChI InChI 1.03 "InChI=1S/C6H12N4O3/c7-4(5(12)13)2-1-3(11)10-6(8)9-2/h2-4,11H,1,7H2,(H,12,13)(H3,8,9,10)/t2-,3+,4+/m1/s1" 5OH InChIKey InChI 1.03 JHJFDHNZNBHFJZ-UZBSEBFBSA-N # _pdbx_chem_comp_identifier.comp_id 5OH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "(2S)-2-azanyl-2-[(4S,6R)-2-azanyl-4-hydroxy-1,4,5,6-tetrahydropyrimidin-6-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5OH "Create component" 2010-02-05 RCSB 5OH "Modify descriptor" 2011-06-04 RCSB 5OH "Modify backbone" 2023-11-03 PDBE 5OH "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 5OH _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #