data_5OL # _chem_comp.id 5OL _chem_comp.name "N~6~-(1,1-dihydroxyethyl)-L-lysine" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H18 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-10-29 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 206.240 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5OL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EFN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5OL CA CA C 0 1 N N S Y N N 6.145 16.445 -1.748 3.204 -0.299 -0.501 CA 5OL 1 5OL N N N 0 1 N N N Y Y N 6.767 17.080 -2.872 3.211 -1.759 -0.342 N 5OL 2 5OL C C C 0 1 N N N Y N Y 6.544 17.174 -0.491 4.496 0.270 0.027 C 5OL 3 5OL O O O 0 1 N N N Y N Y 5.687 17.319 0.429 5.169 -0.373 0.797 O 5OL 4 5OL C03 C03 C 0 1 N N N N N N 6.549 14.991 -1.668 2.029 0.293 0.280 C03 5OL 5 5OL C04 C04 C 0 1 N N N N N N 5.878 14.254 -0.526 0.713 -0.188 -0.335 C04 5OL 6 5OL C05 C05 C 0 1 N N N N N N 6.142 12.754 -0.571 -0.461 0.404 0.446 C05 5OL 7 5OL C06 C06 C 0 1 N N N N N N 5.499 11.935 0.541 -1.777 -0.077 -0.170 C06 5OL 8 5OL N07 N07 N 0 1 N N N N N N 5.982 10.590 0.494 -2.905 0.492 0.580 N07 5OL 9 5OL C08 C08 C 0 1 N N N N N N 5.330 9.680 1.383 -4.188 0.051 0.016 C08 5OL 10 5OL O02 O02 O 0 1 N N N N N N 5.222 10.174 2.710 -4.281 0.477 -1.345 O02 5OL 11 5OL O01 O01 O 0 1 N N N N N N 4.057 9.362 0.859 -4.270 -1.375 0.076 O01 5OL 12 5OL C11 C11 C 0 1 N N N N N N 6.189 8.443 1.402 -5.336 0.662 0.822 C11 5OL 13 5OL OXT OXT O 0 1 N Y N Y N Y 7.803 17.630 -0.463 4.898 1.491 -0.359 OXT 5OL 14 5OL HA H1 H 0 1 N N N Y N N 5.051 16.499 -1.853 3.101 -0.049 -1.557 H1 5OL 15 5OL H2 H2 H 0 1 N Y N Y Y N 6.489 18.040 -2.909 3.306 -2.017 0.629 H2 5OL 16 5OL H H3 H 0 1 N N N Y Y N 7.761 17.025 -2.778 2.384 -2.171 -0.747 H3 5OL 17 5OL H5 H5 H 0 1 N N N N N N 6.275 14.498 -2.613 2.084 -0.031 1.320 H5 5OL 18 5OL H6 H6 H 0 1 N N N N N N 7.639 14.937 -1.528 2.075 1.381 0.236 H6 5OL 19 5OL H7 H7 H 0 1 N N N N N N 6.261 14.652 0.425 0.659 0.136 -1.375 H7 5OL 20 5OL H8 H8 H 0 1 N N N N N N 4.793 14.424 -0.584 0.668 -1.276 -0.291 H8 5OL 21 5OL H9 H9 H 0 1 N N N N N N 5.765 12.373 -1.532 -0.407 0.080 1.485 H9 5OL 22 5OL H10 H10 H 0 1 N N N N N N 7.230 12.601 -0.517 -0.416 1.492 0.402 H10 5OL 23 5OL H11 H11 H 0 1 N N N N N N 5.752 12.380 1.515 -1.832 0.247 -1.209 H11 5OL 24 5OL H12 H12 H 0 1 N N N N N N 4.407 11.935 0.410 -1.823 -1.165 -0.125 H12 5OL 25 5OL H13 H13 H 0 1 N N N N N N 5.863 10.250 -0.439 -2.842 0.259 1.560 H13 5OL 26 5OL H15 H15 H 0 1 N N N N N N 4.783 9.530 3.253 -4.233 1.435 -1.461 H15 5OL 27 5OL H16 H16 H 0 1 N N N N N N 3.616 8.757 1.444 -4.213 -1.735 0.972 H16 5OL 28 5OL H17 H17 H 0 1 N N N N N N 5.741 7.695 2.073 -5.274 1.749 0.776 H17 5OL 29 5OL H18 H18 H 0 1 N N N N N N 6.258 8.029 0.385 -6.288 0.334 0.403 H18 5OL 30 5OL H19 H19 H 0 1 N N N N N N 7.196 8.701 1.762 -5.265 0.337 1.860 H19 5OL 31 5OL HXT H20 H 0 1 N Y N Y N Y 7.958 18.083 0.358 5.733 1.814 0.007 H20 5OL 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5OL N CA SING N N 1 5OL CA C03 SING N N 2 5OL CA C SING N N 3 5OL C03 C04 SING N N 4 5OL C05 C04 SING N N 5 5OL C05 C06 SING N N 6 5OL C O DOUB N N 7 5OL N07 C06 SING N N 8 5OL N07 C08 SING N N 9 5OL O01 C08 SING N N 10 5OL C08 C11 SING N N 11 5OL C08 O02 SING N N 12 5OL C OXT SING N N 13 5OL CA HA SING N N 14 5OL N H2 SING N N 15 5OL N H SING N N 16 5OL C03 H5 SING N N 17 5OL C03 H6 SING N N 18 5OL C04 H7 SING N N 19 5OL C04 H8 SING N N 20 5OL C05 H9 SING N N 21 5OL C05 H10 SING N N 22 5OL C06 H11 SING N N 23 5OL C06 H12 SING N N 24 5OL N07 H13 SING N N 25 5OL O02 H15 SING N N 26 5OL O01 H16 SING N N 27 5OL C11 H17 SING N N 28 5OL C11 H18 SING N N 29 5OL C11 H19 SING N N 30 5OL OXT HXT SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5OL SMILES ACDLabs 12.01 "C(CCCCNC(C)(O)O)(C(=O)O)N" 5OL InChI InChI 1.03 "InChI=1S/C8H18N2O4/c1-8(13,14)10-5-3-2-4-6(9)7(11)12/h6,10,13-14H,2-5,9H2,1H3,(H,11,12)/t6-/m0/s1" 5OL InChIKey InChI 1.03 VPMDIAZXPVLBIV-LURJTMIESA-N 5OL SMILES_CANONICAL CACTVS 3.385 "CC(O)(O)NCCCC[C@H](N)C(O)=O" 5OL SMILES CACTVS 3.385 "CC(O)(O)NCCCC[CH](N)C(O)=O" 5OL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC(NCCCC[C@@H](C(=O)O)N)(O)O" 5OL SMILES "OpenEye OEToolkits" 2.0.4 "CC(NCCCCC(C(=O)O)N)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5OL "SYSTEMATIC NAME" ACDLabs 12.01 "N~6~-(1,1-dihydroxyethyl)-L-lysine" 5OL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-2-azanyl-6-[1,1-bis(oxidanyl)ethylamino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5OL "Create component" 2015-10-29 RCSB 5OL "Modify atom id" 2016-02-18 RCSB 5OL "Initial release" 2016-07-27 RCSB 5OL "Modify backbone" 2023-11-03 PDBE #