data_5PQ # _chem_comp.id 5PQ _chem_comp.name "3-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-4-oxidanyl-cyclobut-3-ene-1,2-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H17 N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2015-11-04 _chem_comp.pdbx_modified_date 2016-09-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 393.331 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5PQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EKV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5PQ C4 C1 C 0 1 Y N N -0.133 -1.536 17.162 3.122 0.140 -0.212 C4 5PQ 1 5PQ C5 C2 C 0 1 Y N N -0.801 -2.745 17.065 3.551 1.412 0.186 C5 5PQ 2 5PQ C6 C3 C 0 1 N N N -2.158 -2.765 16.827 4.937 1.694 0.170 C6 5PQ 3 5PQ C8 C4 C 0 1 Y N N 1.290 -3.165 17.438 1.390 1.383 0.348 C8 5PQ 4 5PQ N1 N1 N 0 1 N N N -2.854 -1.560 16.685 5.786 0.721 -0.228 N1 5PQ 5 5PQ N2 N2 N 0 1 N N N -2.789 0.805 16.657 6.193 -1.468 -1.003 N2 5PQ 6 5PQ N3 N3 N 0 1 N N N -0.819 -0.379 17.022 4.023 -0.775 -0.589 N3 5PQ 7 5PQ O6 O1 O 0 1 N N N -2.755 -3.837 16.740 5.355 2.789 0.508 O6 5PQ 8 5PQ C2 C5 C 0 1 N N N -2.152 -0.355 16.788 5.308 -0.499 -0.604 C2 5PQ 9 5PQ N7 N4 N 1 1 Y N N 0.096 -3.702 17.238 2.446 2.124 0.515 N7 5PQ 10 5PQ CAA C6 C 0 1 N N N -0.192 -5.154 17.212 2.442 3.511 0.987 CAA 5PQ 11 5PQ N9 N5 N 0 1 Y N N 1.153 -1.839 17.392 1.758 0.147 -0.101 N9 5PQ 12 5PQ CAZ C7 C 0 1 N N R 2.272 -0.899 17.573 0.858 -0.967 -0.407 CAZ 5PQ 13 5PQ OAN O2 O 0 1 N N N 3.422 -1.382 16.863 -0.491 -0.491 -0.606 OAN 5PQ 14 5PQ CAX C8 C 0 1 N N R 2.713 -0.908 19.038 0.731 -1.917 0.811 CAX 5PQ 15 5PQ OAH O3 O 0 1 N N N 2.154 0.223 19.711 1.776 -2.891 0.810 OAH 5PQ 16 5PQ CAW C9 C 0 1 N N S 4.233 -0.759 18.965 -0.645 -2.582 0.561 CAW 5PQ 17 5PQ OAG O4 O 0 1 N N N 4.624 0.466 19.589 -0.477 -3.859 -0.058 OAG 5PQ 18 5PQ CAY C10 C 0 1 N N R 4.522 -0.683 17.464 -1.366 -1.611 -0.393 CAY 5PQ 19 5PQ CAJ C11 C 0 1 N N N 5.827 -1.421 17.157 -2.675 -1.135 0.241 CAJ 5PQ 20 5PQ NAL N6 N 0 1 N N N 5.543 -2.588 16.310 -3.402 -0.294 -0.713 NAL 5PQ 21 5PQ CAQ C12 C 0 1 N N N 5.086 -3.583 17.064 -4.612 0.250 -0.364 CAQ 5PQ 22 5PQ CAT C13 C 0 1 N N N 4.373 -4.909 16.790 -5.443 0.205 0.846 CAT 5PQ 23 5PQ OAE O5 O 0 1 N N N 3.984 -5.495 15.781 -5.364 -0.316 1.942 OAE 5PQ 24 5PQ CAS C14 C 0 1 N N N 4.343 -5.203 18.291 -6.421 1.070 0.147 CAS 5PQ 25 5PQ OAD O6 O 0 1 N N N 3.921 -6.124 18.989 -7.496 1.569 0.423 OAD 5PQ 26 5PQ CAP C15 C 0 1 N N N 5.057 -3.878 18.565 -5.532 1.069 -1.016 CAP 5PQ 27 5PQ OAF O7 O 0 1 N N N 5.486 -3.229 19.681 -5.584 1.639 -2.240 OAF 5PQ 28 5PQ H1 H1 H 0 1 N N N 2.210 -3.704 17.608 0.374 1.698 0.535 H1 5PQ 29 5PQ H2 H2 H 0 1 N N N -3.839 -1.560 16.512 6.740 0.893 -0.251 H2 5PQ 30 5PQ H3 H3 H 0 1 N N N -2.283 1.664 16.731 7.145 -1.280 -1.015 H3 5PQ 31 5PQ H4 H4 H 0 1 N N N -3.774 0.818 16.484 5.868 -2.341 -1.273 H4 5PQ 32 5PQ H5 H5 H 0 1 N N N 0.738 -5.716 17.384 2.364 4.185 0.133 H5 5PQ 33 5PQ H6 H6 H 0 1 N N N -0.919 -5.398 18.001 1.592 3.666 1.651 H6 5PQ 34 5PQ H7 H7 H 0 1 N N N -0.609 -5.427 16.232 3.367 3.714 1.526 H7 5PQ 35 5PQ H8 H8 H 0 1 N N N 1.994 0.119 17.261 1.208 -1.512 -1.284 H8 5PQ 36 5PQ H9 H9 H 0 1 N N N 2.438 -1.857 19.521 0.727 -1.354 1.744 H9 5PQ 37 5PQ H10 H10 H 0 1 N N N 2.428 0.218 20.621 1.739 -3.508 1.553 H10 5PQ 38 5PQ H11 H11 H 0 1 N N N 4.731 -1.631 19.413 -1.196 -2.682 1.496 H11 5PQ 39 5PQ H12 H12 H 0 1 N N N 4.445 0.419 20.521 0.023 -4.492 0.475 H12 5PQ 40 5PQ H13 H13 H 0 1 N N N 4.580 0.364 17.131 -1.571 -2.107 -1.342 H13 5PQ 41 5PQ H14 H14 H 0 1 N N N 6.289 -1.755 18.098 -3.286 -1.998 0.504 H14 5PQ 42 5PQ H15 H15 H 0 1 N N N 6.516 -0.744 16.630 -2.455 -0.558 1.139 H15 5PQ 43 5PQ H16 H16 H 0 1 N N N 6.382 -2.877 15.849 -3.029 -0.123 -1.592 H16 5PQ 44 5PQ H17 H17 H 0 1 N N N 5.280 -3.749 20.449 -6.379 2.166 -2.395 H17 5PQ 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5PQ OAE CAT DOUB N N 1 5PQ NAL CAQ SING N N 2 5PQ NAL CAJ SING N N 3 5PQ N2 C2 SING N N 4 5PQ N1 C2 SING N N 5 5PQ N1 C6 SING N N 6 5PQ O6 C6 DOUB N N 7 5PQ C2 N3 DOUB N N 8 5PQ CAT CAQ SING N N 9 5PQ CAT CAS SING N N 10 5PQ C6 C5 SING N N 11 5PQ OAN CAY SING N N 12 5PQ OAN CAZ SING N N 13 5PQ N3 C4 SING N N 14 5PQ CAQ CAP DOUB N N 15 5PQ C5 C4 DOUB Y N 16 5PQ C5 N7 SING Y N 17 5PQ CAJ CAY SING N N 18 5PQ C4 N9 SING Y N 19 5PQ CAA N7 SING N N 20 5PQ N7 C8 DOUB Y N 21 5PQ N9 C8 SING Y N 22 5PQ N9 CAZ SING N N 23 5PQ CAY CAW SING N N 24 5PQ CAZ CAX SING N N 25 5PQ CAS CAP SING N N 26 5PQ CAS OAD DOUB N N 27 5PQ CAP OAF SING N N 28 5PQ CAW CAX SING N N 29 5PQ CAW OAG SING N N 30 5PQ CAX OAH SING N N 31 5PQ C8 H1 SING N N 32 5PQ N1 H2 SING N N 33 5PQ N2 H3 SING N N 34 5PQ N2 H4 SING N N 35 5PQ CAA H5 SING N N 36 5PQ CAA H6 SING N N 37 5PQ CAA H7 SING N N 38 5PQ CAZ H8 SING N N 39 5PQ CAX H9 SING N N 40 5PQ OAH H10 SING N N 41 5PQ CAW H11 SING N N 42 5PQ OAG H12 SING N N 43 5PQ CAY H13 SING N N 44 5PQ CAJ H14 SING N N 45 5PQ CAJ H15 SING N N 46 5PQ NAL H16 SING N N 47 5PQ OAF H17 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5PQ InChI InChI 1.03 "InChI=1S/C15H16N6O7/c1-20-3-21(12-6(20)13(27)19-15(16)18-12)14-11(26)7(22)4(28-14)2-17-5-8(23)10(25)9(5)24/h3-4,7,11,14,22,26H,2H2,1H3,(H4-,16,17,18,19,23,24,25,27)/p+1/t4-,7-,11-,14-/m1/s1" 5PQ InChIKey InChI 1.03 WRZJZJPEHQGNLE-CZCBHZRKSA-O 5PQ SMILES_CANONICAL CACTVS 3.385 "C[n+]1cn([C@@H]2O[C@H](CNC3=C(O)C(=O)C3=O)[C@@H](O)[C@H]2O)c4N=C(N)NC(=O)c14" 5PQ SMILES CACTVS 3.385 "C[n+]1cn([CH]2O[CH](CNC3=C(O)C(=O)C3=O)[CH](O)[CH]2O)c4N=C(N)NC(=O)c14" 5PQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[n+]1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CNC4=C(C(=O)C4=O)O)O)O" 5PQ SMILES "OpenEye OEToolkits" 2.0.4 "C[n+]1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)CNC4=C(C(=O)C4=O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5PQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "3-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-4-oxidanyl-cyclobut-3-ene-1,2-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5PQ "Create component" 2015-11-04 EBI 5PQ "Initial release" 2016-09-07 RCSB #