data_5PR # _chem_comp.id 5PR _chem_comp.name "5-hydroxy-4-(hydroxymethyl)-6-methylpyridine-3-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H9 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5-Pyridoxic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-08-09 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 183.161 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5PR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ALI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5PR N1 N1 N 0 1 Y N N -26.398 -12.374 -20.604 -1.349 1.832 -0.205 N1 5PR 1 5PR C2 C2 C 0 1 Y N N -25.134 -11.895 -20.749 -2.063 0.733 -0.051 C2 5PR 2 5PR C3 C3 C 0 1 Y N N -24.220 -12.093 -19.687 -1.449 -0.495 0.161 C3 5PR 3 5PR O3 O3 O 0 1 N N N -22.969 -11.636 -19.872 -2.196 -1.619 0.318 O3 5PR 4 5PR C4 C4 C 0 1 Y N N -24.557 -12.780 -18.446 -0.063 -0.559 0.210 C4 5PR 5 5PR C5 C5 C 0 1 Y N N -25.859 -13.237 -18.420 0.662 0.627 0.043 C5 5PR 6 5PR C6 C6 C 0 1 Y N N -26.776 -13.030 -19.508 -0.033 1.819 -0.166 C6 5PR 7 5PR C2A C2A C 0 1 N N N -24.700 -11.230 -22.095 -3.567 0.811 -0.106 C2A 5PR 8 5PR C4A C4A C 0 1 N N N -23.532 -12.992 -17.212 0.642 -1.871 0.439 C4A 5PR 9 5PR O4A O4A O 0 1 N N N -22.396 -12.782 -18.138 1.054 -2.416 -0.816 O4A 5PR 10 5PR O51 O51 O 0 1 N N N -25.891 -13.356 -16.054 2.822 1.776 0.043 O51 5PR 11 5PR O52 O52 O 0 1 N N N -27.365 -14.521 -17.136 2.736 -0.438 0.162 O52 5PR 12 5PR C5A C5A C 0 1 N N N -26.313 -13.870 -17.112 2.138 0.616 0.086 C5A 5PR 13 5PR HO3 HO3 H 0 1 N N N -22.446 -11.822 -19.101 -2.388 -2.083 -0.509 HO3 5PR 14 5PR H6 H6 H 0 1 N N N -27.784 -13.411 -19.436 0.514 2.741 -0.297 H6 5PR 15 5PR H2A H2A H 0 1 N N N -25.545 -11.241 -22.799 -3.901 0.669 -1.134 H2A 5PR 16 5PR H2AA H2AA H 0 0 N N N -24.392 -10.191 -21.908 -3.994 0.033 0.525 H2AA 5PR 17 5PR H2AB H2AB H 0 0 N N N -23.857 -11.790 -22.526 -3.893 1.788 0.250 H2AB 5PR 18 5PR H4A H4A H 0 1 N N N -23.620 -12.291 -16.369 1.516 -1.709 1.070 H4A 5PR 19 5PR H4AA H4AA H 0 0 N N N -23.575 -13.961 -16.692 -0.037 -2.568 0.932 H4AA 5PR 20 5PR HO4A HO4A H 0 0 N N N -21.579 -12.853 -17.659 1.516 -3.262 -0.745 HO4A 5PR 21 5PR HO51 HO51 H 0 0 N N N -26.491 -13.553 -15.344 3.786 1.719 0.074 HO51 5PR 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5PR N1 C2 DOUB Y N 1 5PR N1 C6 SING Y N 2 5PR C2 C3 SING Y N 3 5PR C2 C2A SING N N 4 5PR C3 O3 SING N N 5 5PR C3 C4 DOUB Y N 6 5PR C4 C5 SING Y N 7 5PR C4 C4A SING N N 8 5PR C5 C6 DOUB Y N 9 5PR C5 C5A SING N N 10 5PR C4A O4A SING N N 11 5PR O51 C5A SING N N 12 5PR O52 C5A DOUB N N 13 5PR O3 HO3 SING N N 14 5PR C6 H6 SING N N 15 5PR C2A H2A SING N N 16 5PR C2A H2AA SING N N 17 5PR C2A H2AB SING N N 18 5PR C4A H4A SING N N 19 5PR C4A H4AA SING N N 20 5PR O4A HO4A SING N N 21 5PR O51 HO51 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5PR SMILES ACDLabs 12.01 "O=C(O)c1cnc(c(O)c1CO)C" 5PR SMILES_CANONICAL CACTVS 3.370 "Cc1ncc(C(O)=O)c(CO)c1O" 5PR SMILES CACTVS 3.370 "Cc1ncc(C(O)=O)c(CO)c1O" 5PR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1c(c(c(cn1)C(=O)O)CO)O" 5PR SMILES "OpenEye OEToolkits" 1.7.0 "Cc1c(c(c(cn1)C(=O)O)CO)O" 5PR InChI InChI 1.03 "InChI=1S/C8H9NO4/c1-4-7(11)6(3-10)5(2-9-4)8(12)13/h2,10-11H,3H2,1H3,(H,12,13)" 5PR InChIKey InChI 1.03 VJZTVPVXKYQRJZ-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5PR "SYSTEMATIC NAME" ACDLabs 12.01 "5-hydroxy-4-(hydroxymethyl)-6-methylpyridine-3-carboxylic acid" 5PR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "5-hydroxy-4-(hydroxymethyl)-6-methyl-pyridine-3-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5PR "Create component" 2010-08-09 PDBJ 5PR "Modify aromatic_flag" 2011-06-04 RCSB 5PR "Modify descriptor" 2011-06-04 RCSB 5PR "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5PR _pdbx_chem_comp_synonyms.name "5-Pyridoxic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##