data_5R2 # _chem_comp.id 5R2 _chem_comp.name "2-Methyl-2-propanyl {(2R,6S,12Z,13aS,14aR,16aS)-14a-[(cyclopropylsulfonyl)carbamoyl]-2-[(3-ethyl-7-methoxy-2-quinoxalinyl)oxy]-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclop ropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl}carbamate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H50 N6 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "MK-5172 P1-P3 macrocyclic analogue" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-11-12 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 754.893 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EPN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5R2 C10 C1 C 0 1 N N N -15.080 -18.496 17.162 -0.793 0.581 0.808 C10 5R2 1 5R2 C13 C2 C 0 1 N N S -17.361 -20.165 16.151 0.443 2.862 -0.581 C13 5R2 2 5R2 C15 C3 C 0 1 N N N -16.803 -21.948 17.924 2.516 3.942 -1.459 C15 5R2 3 5R2 C17 C4 C 0 1 N N N -15.378 -24.000 17.463 4.949 4.506 -1.398 C17 5R2 4 5R2 C20 C5 C 0 1 N N N -14.191 -23.964 14.632 5.784 1.838 0.824 C20 5R2 5 5R2 C21 C6 C 0 1 N N R -13.104 -23.987 13.629 6.102 0.367 0.745 C21 5R2 6 5R2 C22 C7 C 0 1 N N N -12.807 -22.820 12.785 6.265 -0.394 2.062 C22 5R2 7 5R2 C01 C8 C 0 1 N N N -15.375 -14.517 12.587 -4.306 0.697 4.288 C01 5R2 8 5R2 C02 C9 C 0 1 N N N -14.764 -15.374 13.597 -4.157 -0.817 4.126 C02 5R2 9 5R2 C03 C10 C 0 1 Y N N -13.791 -14.769 14.553 -4.374 -1.192 2.682 C03 5R2 10 5R2 C04 C11 C 0 1 Y N N -13.648 -15.401 15.759 -3.282 -1.224 1.801 C04 5R2 11 5R2 O05 O1 O 0 1 N N N -14.445 -16.477 16.029 -2.042 -0.919 2.256 O05 5R2 12 5R2 C06 C12 C 0 1 N N R -13.955 -17.390 16.973 -0.992 -0.862 1.289 C06 5R2 13 5R2 C07 C13 C 0 1 N N N -12.915 -18.041 16.562 0.340 -1.282 1.929 C07 5R2 14 5R2 C08 C14 C 0 1 N N S -13.387 -19.362 15.883 1.282 -0.081 1.781 C08 5R2 15 5R2 N09 N1 N 0 1 N N N -14.916 -19.346 16.193 0.635 0.891 0.897 N09 5R2 16 5R2 C11 C15 C 0 1 N N N -15.928 -20.197 15.630 1.250 1.914 0.270 C11 5R2 17 5R2 O12 O2 O 0 1 N N N -15.666 -20.935 14.803 2.446 2.072 0.390 O12 5R2 18 5R2 C14 C16 C 0 1 N N N -17.790 -21.466 16.844 1.196 4.186 -0.724 C14 5R2 19 5R2 C16 C17 C 0 1 N N N -16.659 -23.447 18.012 3.546 4.983 -1.017 C16 5R2 20 5R2 C18 C18 C 0 1 N N N -15.598 -25.014 16.396 5.704 4.084 -0.136 C18 5R2 21 5R2 C19 C19 C 0 1 N N N -14.392 -25.048 15.452 6.020 2.612 -0.208 C19 5R2 22 5R2 C23 C20 C 0 1 N N R -12.297 -22.761 14.207 5.024 -0.620 1.196 C23 5R2 23 5R2 N24 N2 N 0 1 N N N -12.600 -21.401 14.569 3.756 -0.076 1.685 N24 5R2 24 5R2 C25 C21 C 0 1 N N N -13.092 -20.904 15.791 2.590 -0.534 1.186 C25 5R2 25 5R2 O26 O3 O 0 1 N N N -13.279 -21.688 16.665 2.594 -1.312 0.256 O26 5R2 26 5R2 C27 C22 C 0 1 N N N -11.000 -23.350 14.867 4.924 -1.928 0.453 C27 5R2 27 5R2 O28 O4 O 0 1 N N N -10.681 -24.424 14.645 5.294 -2.955 0.982 O28 5R2 28 5R2 N29 N3 N 0 1 N N N -10.172 -22.638 15.760 4.425 -1.956 -0.799 N29 5R2 29 5R2 S30 S1 S 0 1 N N N -8.896 -23.148 16.486 4.201 -3.405 -1.568 S30 5R2 30 5R2 O31 O5 O 0 1 N N N -8.070 -23.725 15.663 3.696 -3.047 -2.848 O31 5R2 31 5R2 O32 O6 O 0 1 N N N -9.240 -24.109 17.307 5.449 -4.071 -1.433 O32 5R2 32 5R2 C33 C23 C 0 1 N N N -8.143 -21.917 17.569 2.922 -4.243 -0.591 C33 5R2 33 5R2 C34 C24 C 0 1 N N N -7.065 -21.180 16.823 2.480 -5.634 -1.051 C34 5R2 34 5R2 C35 C25 C 0 1 N N N -6.698 -22.219 17.796 1.550 -4.434 -1.240 C35 5R2 35 5R2 N36 N4 N 0 1 N N N -18.311 -19.808 15.226 -0.855 3.105 0.055 N36 5R2 36 5R2 C37 C26 C 0 1 N N N -18.635 -18.486 14.995 -1.906 3.500 -0.690 C37 5R2 37 5R2 O38 O7 O 0 1 N N N -17.918 -17.644 15.379 -1.804 3.567 -1.899 O38 5R2 38 5R2 O39 O8 O 0 1 N N N -19.311 -18.440 13.797 -3.071 3.819 -0.094 O39 5R2 39 5R2 C40 C27 C 0 1 N N N -19.898 -17.287 13.256 -4.176 4.185 -0.962 C40 5R2 40 5R2 C41 C28 C 0 1 N N N -20.634 -16.487 14.301 -4.450 3.047 -1.947 C41 5R2 41 5R2 C42 C29 C 0 1 N N N -20.882 -17.720 12.186 -5.426 4.439 -0.116 C42 5R2 42 5R2 C43 C30 C 0 1 N N N -18.811 -16.445 12.615 -3.818 5.455 -1.736 C43 5R2 43 5R2 N44 N5 N 0 1 Y N N -12.814 -14.927 16.626 -3.452 -1.551 0.536 N44 5R2 44 5R2 C45 C31 C 0 1 Y N N -12.092 -13.824 16.287 -4.677 -1.853 0.088 C45 5R2 45 5R2 C46 C32 C 0 1 Y N N -11.186 -13.307 17.222 -4.890 -2.204 -1.254 C46 5R2 46 5R2 C47 C33 C 0 1 Y N N -10.412 -12.184 16.909 -6.151 -2.508 -1.683 C47 5R2 47 5R2 O48 O9 O 0 1 N N N -9.503 -11.622 17.786 -6.354 -2.848 -2.983 O48 5R2 48 5R2 C49 C34 C 0 1 N N N -9.223 -12.250 18.983 -7.694 -3.155 -3.371 C49 5R2 49 5R2 C50 C35 C 0 1 Y N N -10.568 -11.576 15.668 -7.236 -2.473 -0.801 C50 5R2 50 5R2 C51 C36 C 0 1 Y N N -11.473 -12.079 14.750 -7.063 -2.136 0.505 C51 5R2 51 5R2 C52 C37 C 0 1 Y N N -12.236 -13.209 15.089 -5.778 -1.818 0.981 C52 5R2 52 5R2 N53 N6 N 0 1 Y N N -13.094 -13.719 14.209 -5.581 -1.489 2.263 N53 5R2 53 5R2 H101 H1 H 0 0 N N N -14.963 -18.998 18.134 -1.128 0.674 -0.225 H101 5R2 54 5R2 H102 H2 H 0 0 N N N -16.079 -18.039 17.104 -1.360 1.262 1.443 H102 5R2 55 5R2 H131 H3 H 0 0 N N N -17.370 -19.398 16.940 0.288 2.423 -1.567 H131 5R2 56 5R2 H151 H4 H 0 0 N N N -15.814 -21.520 17.702 2.884 2.944 -1.223 H151 5R2 57 5R2 H152 H5 H 0 0 N N N -17.152 -21.578 18.899 2.354 4.025 -2.534 H152 5R2 58 5R2 H171 H6 H 0 0 N N N -14.788 -23.171 17.044 4.872 3.656 -2.076 H171 5R2 59 5R2 H172 H7 H 0 0 N N N -14.818 -24.470 18.284 5.487 5.316 -1.890 H172 5R2 60 5R2 H201 H8 H 0 0 N N N -14.827 -23.095 14.720 5.364 2.254 1.727 H201 5R2 61 5R2 H211 H10 H 0 0 N N N -12.547 -24.922 13.468 6.740 0.069 -0.088 H211 5R2 62 5R2 H221 H11 H 0 0 N N N -12.088 -22.921 11.958 7.008 -1.191 2.094 H221 5R2 63 5R2 H222 H12 H 0 0 N N N -13.627 -22.154 12.478 6.138 0.168 2.987 H222 5R2 64 5R2 H011 H13 H 0 0 N N N -16.062 -15.112 11.967 -4.149 0.968 5.332 H011 5R2 65 5R2 H012 H14 H 0 0 N N N -15.934 -13.709 13.081 -3.567 1.203 3.666 H012 5R2 66 5R2 H013 H15 H 0 0 N N N -14.590 -14.083 11.950 -5.307 0.998 3.980 H013 5R2 67 5R2 H021 H16 H 0 0 N N N -15.581 -15.804 14.195 -3.156 -1.119 4.433 H021 5R2 68 5R2 H022 H17 H 0 0 N N N -14.237 -16.179 13.064 -4.896 -1.324 4.747 H022 5R2 69 5R2 H061 H18 H 0 0 N N N -13.790 -16.898 17.943 -1.224 -1.511 0.444 H061 5R2 70 5R2 H071 H19 H 0 0 N N N -12.359 -17.430 15.836 0.192 -1.515 2.983 H071 5R2 71 5R2 H072 H20 H 0 0 N N N -12.264 -18.277 17.417 0.750 -2.147 1.407 H072 5R2 72 5R2 H081 H21 H 0 0 N N N -13.377 -19.077 14.821 1.460 0.369 2.758 H081 5R2 73 5R2 H141 H22 H 0 0 N N N -18.769 -21.301 17.317 0.589 4.890 -1.292 H141 5R2 74 5R2 H142 H23 H 0 0 N N N -17.880 -22.253 16.080 1.401 4.596 0.265 H142 5R2 75 5R2 H161 H24 H 0 0 N N N -16.726 -23.733 19.072 3.339 5.932 -1.510 H161 5R2 76 5R2 H162 H25 H 0 0 N N N -17.492 -23.902 17.456 3.489 5.115 0.064 H162 5R2 77 5R2 H181 H26 H 0 0 N N N -15.729 -26.005 16.856 6.632 4.651 -0.061 H181 5R2 78 5R2 H182 H27 H 0 0 N N N -16.501 -24.752 15.825 5.086 4.281 0.740 H182 5R2 79 5R2 H191 H28 H 0 0 N N N -13.723 -25.895 15.432 6.440 2.194 -1.111 H191 5R2 80 5R2 H241 H30 H 0 0 N N N -12.439 -20.718 13.857 3.754 0.613 2.368 H241 5R2 81 5R2 H291 H31 H 0 0 N N N -10.438 -21.693 15.948 4.198 -1.127 -1.249 H291 5R2 82 5R2 H331 H34 H 0 0 N N N -8.791 -21.442 18.320 2.950 -4.052 0.481 H331 5R2 83 5R2 H341 H35 H 0 0 N N N -6.921 -21.359 15.747 2.958 -6.045 -1.940 H341 5R2 84 5R2 H342 H36 H 0 0 N N N -6.866 -20.122 17.048 2.217 -6.358 -0.280 H342 5R2 85 5R2 H351 H37 H 0 0 N N N -6.222 -21.935 18.746 0.674 -4.370 -0.594 H351 5R2 86 5R2 H352 H38 H 0 0 N N N -6.277 -23.173 17.445 1.415 -4.057 -2.254 H352 5R2 87 5R2 H361 H39 H 0 0 N N N -18.780 -20.523 14.707 -0.957 2.981 1.011 H361 5R2 88 5R2 H411 H40 H 0 0 N N N -21.077 -15.595 13.835 -4.779 2.164 -1.400 H411 5R2 89 5R2 H412 H41 H 0 0 N N N -21.430 -17.105 14.742 -5.229 3.352 -2.647 H412 5R2 90 5R2 H413 H42 H 0 0 N N N -19.931 -16.178 15.089 -3.538 2.815 -2.497 H413 5R2 91 5R2 H421 H43 H 0 0 N N N -21.358 -16.832 11.744 -5.230 5.250 0.586 H421 5R2 92 5R2 H422 H44 H 0 0 N N N -20.349 -18.279 11.402 -6.255 4.714 -0.767 H422 5R2 93 5R2 H423 H45 H 0 0 N N N -21.653 -18.364 12.635 -5.681 3.535 0.436 H423 5R2 94 5R2 H431 H46 H 0 0 N N N -19.256 -15.536 12.185 -2.927 5.274 -2.339 H431 5R2 95 5R2 H432 H47 H 0 0 N N N -18.068 -16.165 13.376 -4.647 5.730 -2.388 H432 5R2 96 5R2 H433 H48 H 0 0 N N N -18.320 -17.024 11.819 -3.622 6.266 -1.035 H433 5R2 97 5R2 H461 H49 H 0 0 N N N -11.084 -13.777 18.189 -4.060 -2.234 -1.945 H461 5R2 98 5R2 H491 H50 H 0 0 N N N -8.483 -11.660 19.543 -7.716 -3.409 -4.431 H491 5R2 99 5R2 H492 H51 H 0 0 N N N -10.146 -12.338 19.575 -8.057 -4.000 -2.787 H492 5R2 100 5R2 H493 H52 H 0 0 N N N -8.817 -13.253 18.785 -8.332 -2.289 -3.192 H493 5R2 101 5R2 H501 H53 H 0 0 N N N -9.979 -10.706 15.419 -8.224 -2.717 -1.161 H501 5R2 102 5R2 H511 H54 H 0 0 N N N -11.591 -11.609 13.785 -7.909 -2.113 1.175 H511 5R2 103 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5R2 C10 C06 SING N N 1 5R2 C10 N09 SING N N 2 5R2 C13 C11 SING N N 3 5R2 C13 C14 SING N N 4 5R2 C13 N36 SING N N 5 5R2 C15 C14 SING N N 6 5R2 C15 C16 SING N N 7 5R2 C17 C16 SING N N 8 5R2 C17 C18 SING N N 9 5R2 C20 C21 SING N N 10 5R2 C20 C19 DOUB N E 11 5R2 C21 C22 SING N N 12 5R2 C21 C23 SING N N 13 5R2 C22 C23 SING N N 14 5R2 C01 C02 SING N N 15 5R2 C02 C03 SING N N 16 5R2 C03 C04 DOUB Y N 17 5R2 C03 N53 SING Y N 18 5R2 C04 O05 SING N N 19 5R2 C04 N44 SING Y N 20 5R2 O05 C06 SING N N 21 5R2 C06 C07 SING N N 22 5R2 C07 C08 SING N N 23 5R2 C08 N09 SING N N 24 5R2 C08 C25 SING N N 25 5R2 N09 C11 SING N N 26 5R2 C11 O12 DOUB N N 27 5R2 C18 C19 SING N N 28 5R2 C23 N24 SING N N 29 5R2 C23 C27 SING N N 30 5R2 N24 C25 SING N N 31 5R2 C25 O26 DOUB N N 32 5R2 C27 O28 DOUB N N 33 5R2 C27 N29 SING N N 34 5R2 N29 S30 SING N N 35 5R2 S30 O31 DOUB N N 36 5R2 S30 O32 DOUB N N 37 5R2 S30 C33 SING N N 38 5R2 C33 C34 SING N N 39 5R2 C33 C35 SING N N 40 5R2 C34 C35 SING N N 41 5R2 N36 C37 SING N N 42 5R2 C37 O38 DOUB N N 43 5R2 C37 O39 SING N N 44 5R2 O39 C40 SING N N 45 5R2 C40 C41 SING N N 46 5R2 C40 C42 SING N N 47 5R2 C40 C43 SING N N 48 5R2 N44 C45 DOUB Y N 49 5R2 C45 C46 SING Y N 50 5R2 C45 C52 SING Y N 51 5R2 C46 C47 DOUB Y N 52 5R2 C47 O48 SING N N 53 5R2 C47 C50 SING Y N 54 5R2 O48 C49 SING N N 55 5R2 C50 C51 DOUB Y N 56 5R2 C51 C52 SING Y N 57 5R2 C52 N53 DOUB Y N 58 5R2 C10 H101 SING N N 59 5R2 C10 H102 SING N N 60 5R2 C13 H131 SING N N 61 5R2 C15 H151 SING N N 62 5R2 C15 H152 SING N N 63 5R2 C17 H171 SING N N 64 5R2 C17 H172 SING N N 65 5R2 C20 H201 SING N N 66 5R2 C21 H211 SING N N 67 5R2 C22 H221 SING N N 68 5R2 C22 H222 SING N N 69 5R2 C01 H011 SING N N 70 5R2 C01 H012 SING N N 71 5R2 C01 H013 SING N N 72 5R2 C02 H021 SING N N 73 5R2 C02 H022 SING N N 74 5R2 C06 H061 SING N N 75 5R2 C07 H071 SING N N 76 5R2 C07 H072 SING N N 77 5R2 C08 H081 SING N N 78 5R2 C14 H141 SING N N 79 5R2 C14 H142 SING N N 80 5R2 C16 H161 SING N N 81 5R2 C16 H162 SING N N 82 5R2 C18 H181 SING N N 83 5R2 C18 H182 SING N N 84 5R2 C19 H191 SING N N 85 5R2 N24 H241 SING N N 86 5R2 N29 H291 SING N N 87 5R2 C33 H331 SING N N 88 5R2 C34 H341 SING N N 89 5R2 C34 H342 SING N N 90 5R2 C35 H351 SING N N 91 5R2 C35 H352 SING N N 92 5R2 N36 H361 SING N N 93 5R2 C41 H411 SING N N 94 5R2 C41 H412 SING N N 95 5R2 C41 H413 SING N N 96 5R2 C42 H421 SING N N 97 5R2 C42 H422 SING N N 98 5R2 C42 H423 SING N N 99 5R2 C43 H431 SING N N 100 5R2 C43 H432 SING N N 101 5R2 C43 H433 SING N N 102 5R2 C46 H461 SING N N 103 5R2 C49 H491 SING N N 104 5R2 C49 H492 SING N N 105 5R2 C49 H493 SING N N 106 5R2 C50 H501 SING N N 107 5R2 C51 H511 SING N N 108 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5R2 InChI InChI 1.03 "InChI=1S/C37H50N6O9S/c1-6-26-32(39-29-18-23(50-5)14-17-27(29)38-26)51-24-19-30-31(44)41-37(34(46)42-53(48,49)25-15-16-25)20-22(37)12-10-8-7-9-11-13-28(33(45)43(30)21-24)40-35(47)52-36(2,3)4/h10,12,14,17-18,22,24-25,28,30H,6-9,11,13,15-16,19-21H2,1-5H3,(H,40,47)(H,41,44)(H,42,46)/b12-10+/t22-,24+,28-,30-,37+/m0/s1" 5R2 InChIKey InChI 1.03 YCYCBCSJYGZXLL-GTGBOCSISA-N 5R2 SMILES_CANONICAL CACTVS 3.385 "CCc1nc2ccc(OC)cc2nc1O[C@@H]3C[C@@H]4N(C3)C(=O)[C@H](CCCCC/C=C/[C@H]5C[C@]5(NC4=O)C(=O)N[S](=O)(=O)C6CC6)NC(=O)OC(C)(C)C" 5R2 SMILES CACTVS 3.385 "CCc1nc2ccc(OC)cc2nc1O[CH]3C[CH]4N(C3)C(=O)[CH](CCCCCC=C[CH]5C[C]5(NC4=O)C(=O)N[S](=O)(=O)C6CC6)NC(=O)OC(C)(C)C" 5R2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CCc1c(nc2cc(ccc2n1)OC)O[C@@H]3C[C@H]4C(=O)N[C@@]5(C[C@@H]5/C=C/CCCCC[C@@H](C(=O)N4C3)NC(=O)OC(C)(C)C)C(=O)NS(=O)(=O)C6CC6" 5R2 SMILES "OpenEye OEToolkits" 2.0.4 "CCc1c(nc2cc(ccc2n1)OC)OC3CC4C(=O)NC5(CC5C=CCCCCCC(C(=O)N4C3)NC(=O)OC(C)(C)C)C(=O)NS(=O)(=O)C6CC6" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5R2 "Create component" 2015-11-12 RCSB 5R2 "Initial release" 2016-01-13 RCSB 5R2 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5R2 _pdbx_chem_comp_synonyms.name "MK-5172 P1-P3 macrocyclic analogue" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##