data_5R7 # _chem_comp.id 5R7 _chem_comp.name ;(2~{S},3~{R})-3-methyl-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-[(sulfamoylamino)meth yl]pyrrolidin-3-yl]sulfanyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H26 N4 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Doripenem(open form, pyrroline tautomer form 3, SP3 connection to Thio as R isomer)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-11-16 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 422.520 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5R7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5CTN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5R7 CAA C1 C 0 1 N N N 17.637 6.730 -5.911 -6.453 1.790 -1.867 CAA 5R7 1 5R7 CAB C2 C 0 1 N N N 15.114 8.916 -8.000 -2.179 1.572 0.712 CAB 5R7 2 5R7 NAC N1 N 0 1 N N N 7.269 5.572 -11.883 7.400 -1.241 0.512 NAC 5R7 3 5R7 OAD O1 O 0 1 N N N 14.298 4.657 -4.908 -4.133 2.181 2.180 OAD 5R7 4 5R7 OAE O2 O 0 1 N N N 11.200 8.293 -3.483 -4.128 -3.431 0.602 OAE 5R7 5 5R7 OAF O3 O 0 1 N N N 6.829 5.631 -9.431 7.221 1.137 1.149 OAF 5R7 6 5R7 OAG O4 O 0 1 N N N 9.002 5.129 -10.145 7.903 0.495 -1.169 OAG 5R7 7 5R7 OAH O5 O 0 1 N N N 10.780 9.887 -4.921 -1.955 -3.384 0.158 OAH 5R7 8 5R7 OAI O6 O 0 1 N N N 16.447 4.790 -6.691 -6.691 0.155 -0.103 OAI 5R7 9 5R7 CAJ C3 C 0 1 N N N 14.763 5.762 -4.785 -4.590 1.336 1.448 CAJ 5R7 10 5R7 CAK C4 C 0 1 N N N 10.356 9.753 -8.536 1.366 -0.325 -1.388 CAK 5R7 11 5R7 CAL C5 C 0 1 N N N 8.958 8.108 -11.414 4.459 0.191 0.491 CAL 5R7 12 5R7 CAM C6 C 0 1 N N N 11.168 8.205 -10.221 1.963 0.361 0.857 CAM 5R7 13 5R7 NAN N2 N 0 1 N N N 13.785 8.159 -4.641 -4.179 -0.726 -0.381 NAN 5R7 14 5R7 NAO N3 N 0 1 N N N 9.525 9.807 -9.724 2.822 -0.096 -1.336 NAO 5R7 15 5R7 NAP N4 N 0 1 N N N 8.195 7.479 -10.352 5.534 0.381 -0.486 NAP 5R7 16 5R7 SAQ S1 S 0 1 N N N 12.258 7.990 -7.692 -0.564 -0.743 0.554 SAQ 5R7 17 5R7 CAR C7 C 0 1 N N N 11.517 8.975 -4.483 -3.019 -2.799 0.176 CAR 5R7 18 5R7 CAS C8 C 0 1 N N N 12.785 8.732 -5.169 -3.096 -1.388 -0.272 CAS 5R7 19 5R7 CAT C9 C 0 1 N N R 16.387 6.217 -6.616 -6.260 1.489 -0.379 CAT 5R7 20 5R7 CAU C10 C 0 1 N N R 14.557 9.102 -6.590 -2.444 0.902 -0.638 CAU 5R7 21 5R7 CAV C11 C 0 1 N N S 10.032 9.016 -10.827 3.135 0.667 -0.109 CAV 5R7 22 5R7 CAW C12 C 0 1 N N S 11.602 8.996 -8.991 0.755 0.305 -0.119 CAW 5R7 23 5R7 CAX C13 C 0 1 N N S 15.059 6.651 -5.962 -4.780 1.632 -0.018 CAX 5R7 24 5R7 CAY C14 C 0 1 N N S 14.979 8.101 -5.494 -3.955 0.647 -0.848 CAY 5R7 25 5R7 CAZ C15 C 0 1 N N R 13.032 9.134 -6.576 -1.899 -0.547 -0.659 CAZ 5R7 26 5R7 SBA S2 S 0 1 N N N 7.832 5.920 -10.423 7.116 0.308 -0.001 SBA 5R7 27 5R7 H1 H1 H 0 1 N N N 17.599 7.828 -5.849 -7.507 1.688 -2.124 H1 5R7 28 5R7 H2 H2 H 0 1 N N N 17.686 6.307 -4.897 -6.124 2.807 -2.078 H2 5R7 29 5R7 H3 H3 H 0 1 N N N 18.529 6.425 -6.478 -5.865 1.088 -2.458 H3 5R7 30 5R7 H4 H4 H 0 1 N N N 16.213 8.899 -7.961 -1.105 1.697 0.851 H4 5R7 31 5R7 H5 H5 H 0 1 N N N 14.747 7.966 -8.417 -2.664 2.548 0.734 H5 5R7 32 5R7 H6 H6 H 0 1 N N N 14.783 9.749 -8.638 -2.579 0.949 1.511 H6 5R7 33 5R7 H7 H7 H 0 1 N N N 7.042 4.599 -11.930 6.688 -1.899 0.485 H7 5R7 34 5R7 H8 H8 H 0 1 N N N 6.449 6.115 -12.062 8.279 -1.490 0.839 H8 5R7 35 5R7 H9 H9 H 0 1 N N N 10.358 8.585 -3.154 -4.028 -4.351 0.884 H9 5R7 36 5R7 H10 H10 H 0 1 N N N 15.772 4.415 -6.137 -7.622 -0.008 -0.308 H10 5R7 37 5R7 H11 H11 H 0 1 N N N 14.975 6.128 -3.791 -4.863 0.369 1.843 H11 5R7 38 5R7 H12 H12 H 0 1 N N N 10.617 10.766 -8.195 0.947 0.150 -2.276 H12 5R7 39 5R7 H13 H13 H 0 1 N N N 9.845 9.213 -7.725 1.160 -1.395 -1.407 H13 5R7 40 5R7 H14 H14 H 0 1 N N N 8.281 8.706 -12.042 4.383 -0.866 0.746 H14 5R7 41 5R7 H15 H15 H 0 1 N N N 9.436 7.330 -12.027 4.678 0.767 1.390 H15 5R7 42 5R7 H16 H16 H 0 1 N N N 10.817 7.203 -9.933 2.111 -0.599 1.351 H16 5R7 43 5R7 H17 H17 H 0 1 N N N 12.000 8.111 -10.934 1.838 1.159 1.589 H17 5R7 44 5R7 H20 H20 H 0 1 N N N 9.462 10.760 -10.022 3.140 0.395 -2.158 H20 5R7 45 5R7 H22 H22 H 0 1 N N N 8.714 7.614 -9.508 5.320 0.550 -1.416 H22 5R7 46 5R7 H24 H24 H 0 1 N N N 16.395 6.623 -7.638 -6.848 2.191 0.213 H24 5R7 47 5R7 H25 H25 H 0 1 N N N 14.893 10.092 -6.250 -2.026 1.491 -1.455 H25 5R7 48 5R7 H26 H26 H 0 1 N N N 10.430 9.669 -11.617 3.178 1.735 -0.326 H26 5R7 49 5R7 H27 H27 H 0 1 N N N 12.389 9.712 -9.269 0.382 1.308 -0.329 H27 5R7 50 5R7 H28 H28 H 0 1 N N N 14.263 6.499 -6.706 -4.451 2.650 -0.228 H28 5R7 51 5R7 H29 H29 H 0 1 N N N 15.895 8.421 -4.976 -4.211 0.736 -1.904 H29 5R7 52 5R7 H18 H18 H 0 1 N N N 12.648 10.142 -6.792 -1.550 -0.811 -1.657 H18 5R7 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5R7 NAC SBA SING N N 1 5R7 CAL CAV SING N N 2 5R7 CAL NAP SING N N 3 5R7 CAV CAM SING N N 4 5R7 CAV NAO SING N N 5 5R7 SBA NAP SING N N 6 5R7 SBA OAG DOUB N N 7 5R7 SBA OAF DOUB N N 8 5R7 CAM CAW SING N N 9 5R7 NAO CAK SING N N 10 5R7 CAW CAK SING N N 11 5R7 CAW SAQ SING N N 12 5R7 CAB CAU SING N N 13 5R7 SAQ CAZ SING N N 14 5R7 OAI CAT SING N N 15 5R7 CAT CAX SING N N 16 5R7 CAT CAA SING N N 17 5R7 CAU CAZ SING N N 18 5R7 CAU CAY SING N N 19 5R7 CAZ CAS SING N N 20 5R7 CAX CAY SING N N 21 5R7 CAX CAJ SING N N 22 5R7 CAY NAN SING N N 23 5R7 CAS NAN DOUB N N 24 5R7 CAS CAR SING N N 25 5R7 OAH CAR DOUB N N 26 5R7 OAD CAJ DOUB N N 27 5R7 CAR OAE SING N N 28 5R7 CAA H1 SING N N 29 5R7 CAA H2 SING N N 30 5R7 CAA H3 SING N N 31 5R7 CAB H4 SING N N 32 5R7 CAB H5 SING N N 33 5R7 CAB H6 SING N N 34 5R7 NAC H7 SING N N 35 5R7 NAC H8 SING N N 36 5R7 OAE H9 SING N N 37 5R7 OAI H10 SING N N 38 5R7 CAJ H11 SING N N 39 5R7 CAK H12 SING N N 40 5R7 CAK H13 SING N N 41 5R7 CAL H14 SING N N 42 5R7 CAL H15 SING N N 43 5R7 CAM H16 SING N N 44 5R7 CAM H17 SING N N 45 5R7 NAO H20 SING N N 46 5R7 NAP H22 SING N N 47 5R7 CAT H24 SING N N 48 5R7 CAU H25 SING N N 49 5R7 CAV H26 SING N N 50 5R7 CAW H27 SING N N 51 5R7 CAX H28 SING N N 52 5R7 CAY H29 SING N N 53 5R7 CAZ H18 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5R7 SMILES ACDLabs 12.01 "CC(O)C(C=O)C2N=C(C(O)=O)C(SC1CNC(CNS(N)(=O)=O)C1)C2C" 5R7 InChI InChI 1.03 "InChI=1S/C15H26N4O6S2/c1-7-12(11(6-20)8(2)21)19-13(15(22)23)14(7)26-10-3-9(17-5-10)4-18-27(16,24)25/h6-12,14,17-18,21H,3-5H2,1-2H3,(H,22,23)(H2,16,24,25)/t7-,8-,9+,10+,11-,12-,14-/m1/s1" 5R7 InChIKey InChI 1.03 RBKUPZPTQNSPAV-QZOCKBNKSA-N 5R7 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@@H](C=O)[C@@H]1N=C([C@H](S[C@@H]2CN[C@H](CN[S](N)(=O)=O)C2)[C@@H]1C)C(O)=O" 5R7 SMILES CACTVS 3.385 "C[CH](O)[CH](C=O)[CH]1N=C([CH](S[CH]2CN[CH](CN[S](N)(=O)=O)C2)[CH]1C)C(O)=O" 5R7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1[C@H](C(=N[C@H]1[C@H](C=O)[C@@H](C)O)C(=O)O)S[C@H]2C[C@H](NC2)CNS(=O)(=O)N" 5R7 SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(=NC1C(C=O)C(C)O)C(=O)O)SC2CC(NC2)CNS(=O)(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5R7 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3R,4R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid" 5R7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R,4R)-3-methyl-2-[(2S,3R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]-4-[(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl]sulfanyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5R7 "Create component" 2015-11-16 RCSB 5R7 "Initial release" 2015-11-25 RCSB 5R7 "Modify synonyms" 2016-09-19 RCSB 5R7 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5R7 _pdbx_chem_comp_synonyms.name "Doripenem(open form, pyrroline tautomer form 3, SP3 connection to Thio as R isomer)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##