data_5RA # _chem_comp.id 5RA _chem_comp.name "5-[(4-methyl-1,4-diazepan-1-yl)methyl]-2-[4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]benzenecarbonitrile" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H37 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-11-16 _chem_comp.pdbx_modified_date 2015-12-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 431.616 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5RA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EQY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5RA C1 C1 C 0 1 N N N 33.803 38.306 36.948 -6.920 2.874 2.226 C1 5RA 1 5RA C51 C2 C 0 1 N N N 44.901 28.671 45.361 4.967 2.133 0.457 C51 5RA 2 5RA C6 C3 C 0 1 N N N 33.603 36.833 35.550 -6.491 2.592 -0.117 C6 5RA 3 5RA C8 C4 C 0 1 N N N 34.596 34.449 35.460 -6.750 0.277 -1.165 C8 5RA 4 5RA C10 C5 C 0 1 N N N 35.817 35.501 37.420 -5.362 -0.130 0.741 C10 5RA 5 5RA N2 N1 N 0 1 N N N 33.613 36.595 36.979 -6.626 1.918 1.150 N2 5RA 6 5RA C7 C6 C 0 1 N N N 33.926 35.596 34.691 -7.084 1.779 -1.287 C7 5RA 7 5RA N9 N2 N 0 1 N N N 35.882 34.816 36.080 -5.396 0.043 -0.730 N9 5RA 8 5RA C11 C7 C 0 1 N N N 34.910 36.711 37.622 -5.395 1.149 1.446 C11 5RA 9 5RA C22 C8 C 0 1 N N N 36.892 33.702 35.928 -4.819 -1.124 -1.410 C22 5RA 10 5RA C23 C9 C 0 1 Y N N 37.752 33.346 37.135 -3.341 -1.194 -1.122 C23 5RA 11 5RA C26 C10 C 0 1 Y N N 37.187 32.717 38.276 -2.889 -1.897 -0.025 C26 5RA 12 5RA C27 C11 C 0 1 Y N N 37.973 32.386 39.405 -1.521 -1.964 0.245 C27 5RA 13 5RA C28 C12 C 0 1 Y N N 39.381 32.653 39.429 -0.613 -1.311 -0.607 C28 5RA 14 5RA C29 C13 C 0 1 Y N N 39.933 33.283 38.284 -1.089 -0.606 -1.709 C29 5RA 15 5RA C30 C14 C 0 1 Y N N 39.142 33.619 37.149 -2.445 -0.555 -1.963 C30 5RA 16 5RA C34 C15 C 0 1 Y N N 40.292 32.332 40.599 0.842 -1.372 -0.333 C34 5RA 17 5RA C35 C16 C 0 1 Y N N 40.667 30.995 40.906 1.731 -1.729 -1.346 C35 5RA 18 5RA C36 C17 C 0 1 Y N N 41.519 30.699 42.010 3.085 -1.784 -1.086 C36 5RA 19 5RA C37 C18 C 0 1 Y N N 42.027 31.738 42.842 3.561 -1.486 0.179 C37 5RA 20 5RA C38 C19 C 0 1 Y N N 41.648 33.067 42.532 2.684 -1.131 1.188 C38 5RA 21 5RA C39 C20 C 0 1 Y N N 40.804 33.354 41.440 1.329 -1.067 0.938 C39 5RA 22 5RA C44 C21 C 0 1 N N N 37.254 31.761 40.493 -1.046 -2.692 1.383 C44 5RA 23 5RA N45 N3 N 0 1 N N N 36.694 31.276 41.392 -0.670 -3.270 2.286 N45 5RA 24 5RA C46 C22 C 0 1 N N N 42.945 31.456 44.016 5.041 -1.549 0.457 C46 5RA 25 5RA N47 N4 N 0 1 N N N 43.934 30.389 43.735 5.646 -0.238 0.187 N47 5RA 26 5RA C50 C23 C 0 1 N N N 43.757 29.073 44.400 5.164 0.756 1.115 C50 5RA 27 5RA N52 N5 N 0 1 N N N 46.003 29.662 45.347 6.065 2.485 -0.474 N52 5RA 28 5RA C53 C24 C 0 1 N N N 46.922 29.616 44.182 7.383 2.151 0.009 C53 5RA 29 5RA C54 C25 C 0 1 N N N 46.260 29.678 42.794 7.763 0.753 -0.521 C54 5RA 30 5RA C55 C26 C 0 1 N N N 45.007 30.586 42.704 7.124 -0.313 0.248 C55 5RA 31 5RA C66 C27 C 0 1 N N N 46.655 29.911 46.641 5.991 3.899 -0.865 C66 5RA 32 5RA H1 H1 H 0 1 N N N 33.872 38.687 37.978 -7.815 3.443 1.972 H1 5RA 33 5RA H2 H2 H 0 1 N N N 34.722 38.563 36.400 -7.086 2.333 3.158 H2 5RA 34 5RA H3 H3 H 0 1 N N N 32.937 38.762 36.446 -6.079 3.556 2.347 H3 5RA 35 5RA H4 H4 H 0 1 N N N 44.500 28.599 46.383 4.027 2.129 -0.094 H4 5RA 36 5RA H5 H5 H 0 1 N N N 45.298 27.692 45.053 4.912 2.891 1.238 H5 5RA 37 5RA H6 H6 H 0 1 N N N 32.602 37.194 35.269 -7.003 3.553 -0.062 H6 5RA 38 5RA H7 H7 H 0 1 N N N 34.349 37.610 35.326 -5.433 2.769 -0.311 H7 5RA 39 5RA H8 H8 H 0 1 N N N 33.911 34.118 36.254 -7.434 -0.179 -0.449 H8 5RA 40 5RA H9 H9 H 0 1 N N N 34.774 33.620 34.759 -6.895 -0.196 -2.137 H9 5RA 41 5RA H10 H10 H 0 1 N N N 35.498 34.741 38.148 -6.222 -0.725 1.047 H10 5RA 42 5RA H11 H11 H 0 1 N N N 36.840 35.829 37.657 -4.450 -0.660 1.014 H11 5RA 43 5RA H13 H13 H 0 1 N N N 32.986 35.220 34.262 -8.166 1.903 -1.294 H13 5RA 44 5RA H14 H14 H 0 1 N N N 34.601 35.907 33.880 -6.677 2.158 -2.225 H14 5RA 45 5RA H16 H16 H 0 1 N N N 34.749 36.845 38.702 -5.343 0.963 2.519 H16 5RA 46 5RA H17 H17 H 0 1 N N N 35.420 37.596 37.214 -4.529 1.740 1.148 H17 5RA 47 5RA H18 H18 H 0 1 N N N 36.338 32.795 35.642 -5.302 -2.032 -1.049 H18 5RA 48 5RA H19 H19 H 0 1 N N N 37.574 33.988 35.113 -4.975 -1.032 -2.485 H19 5RA 49 5RA H20 H20 H 0 1 N N N 36.132 32.486 38.282 -3.593 -2.395 0.625 H20 5RA 50 5RA H21 H21 H 0 1 N N N 40.988 33.515 38.273 -0.397 -0.101 -2.367 H21 5RA 51 5RA H22 H22 H 0 1 N N N 39.605 34.086 36.292 -2.809 -0.010 -2.821 H22 5RA 52 5RA H23 H23 H 0 1 N N N 40.299 30.188 40.290 1.360 -1.963 -2.333 H23 5RA 53 5RA H24 H24 H 0 1 N N N 41.783 29.673 42.219 3.774 -2.061 -1.870 H24 5RA 54 5RA H25 H25 H 0 1 N N N 42.013 33.878 43.145 3.062 -0.900 2.173 H25 5RA 55 5RA H26 H26 H 0 1 N N N 40.539 34.381 41.238 0.646 -0.786 1.725 H26 5RA 56 5RA H27 H27 H 0 1 N N N 43.488 32.380 44.266 5.203 -1.815 1.502 H27 5RA 57 5RA H28 H28 H 0 1 N N N 42.331 31.147 44.875 5.500 -2.300 -0.185 H28 5RA 58 5RA H30 H30 H 0 1 N N N 43.680 28.303 43.619 5.881 0.853 1.930 H30 5RA 59 5RA H31 H31 H 0 1 N N N 42.821 29.105 44.977 4.210 0.422 1.525 H31 5RA 60 5RA H33 H33 H 0 1 N N N 47.611 30.469 44.264 8.102 2.887 -0.352 H33 5RA 61 5RA H34 H34 H 0 1 N N N 47.492 28.677 44.241 7.381 2.142 1.099 H34 5RA 62 5RA H35 H35 H 0 1 N N N 47.005 30.053 42.077 7.455 0.673 -1.563 H35 5RA 63 5RA H36 H36 H 0 1 N N N 45.962 28.657 42.512 8.845 0.633 -0.462 H36 5RA 64 5RA H37 H37 H 0 1 N N N 44.550 30.421 41.717 7.439 -0.236 1.289 H37 5RA 65 5RA H38 H38 H 0 1 N N N 45.349 31.629 42.780 7.446 -1.276 -0.147 H38 5RA 66 5RA H39 H39 H 0 1 N N N 47.452 30.658 46.513 6.071 4.526 0.023 H39 5RA 67 5RA H40 H40 H 0 1 N N N 45.912 30.287 47.359 6.808 4.131 -1.549 H40 5RA 68 5RA H41 H41 H 0 1 N N N 47.089 28.974 47.019 5.038 4.090 -1.360 H41 5RA 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5RA C51 C50 SING N N 1 5RA C51 N52 SING N N 2 5RA C6 N2 SING N N 3 5RA C6 C7 SING N N 4 5RA C8 C7 SING N N 5 5RA C8 N9 SING N N 6 5RA C10 N9 SING N N 7 5RA C10 C11 SING N N 8 5RA N2 C11 SING N N 9 5RA N9 C22 SING N N 10 5RA C22 C23 SING N N 11 5RA C23 C26 DOUB Y N 12 5RA C23 C30 SING Y N 13 5RA C26 C27 SING Y N 14 5RA C27 C28 DOUB Y N 15 5RA C27 C44 SING N N 16 5RA C28 C29 SING Y N 17 5RA C28 C34 SING N N 18 5RA C29 C30 DOUB Y N 19 5RA C34 C35 DOUB Y N 20 5RA C34 C39 SING Y N 21 5RA C35 C36 SING Y N 22 5RA C36 C37 DOUB Y N 23 5RA C37 C38 SING Y N 24 5RA C37 C46 SING N N 25 5RA C38 C39 DOUB Y N 26 5RA C44 N45 TRIP N N 27 5RA C46 N47 SING N N 28 5RA N47 C50 SING N N 29 5RA N47 C55 SING N N 30 5RA N52 C53 SING N N 31 5RA N52 C66 SING N N 32 5RA C53 C54 SING N N 33 5RA C54 C55 SING N N 34 5RA N2 C1 SING N N 35 5RA C1 H1 SING N N 36 5RA C1 H2 SING N N 37 5RA C1 H3 SING N N 38 5RA C51 H4 SING N N 39 5RA C51 H5 SING N N 40 5RA C6 H6 SING N N 41 5RA C6 H7 SING N N 42 5RA C8 H8 SING N N 43 5RA C8 H9 SING N N 44 5RA C10 H10 SING N N 45 5RA C10 H11 SING N N 46 5RA C7 H13 SING N N 47 5RA C7 H14 SING N N 48 5RA C11 H16 SING N N 49 5RA C11 H17 SING N N 50 5RA C22 H18 SING N N 51 5RA C22 H19 SING N N 52 5RA C26 H20 SING N N 53 5RA C29 H21 SING N N 54 5RA C30 H22 SING N N 55 5RA C35 H23 SING N N 56 5RA C36 H24 SING N N 57 5RA C38 H25 SING N N 58 5RA C39 H26 SING N N 59 5RA C46 H27 SING N N 60 5RA C46 H28 SING N N 61 5RA C50 H30 SING N N 62 5RA C50 H31 SING N N 63 5RA C53 H33 SING N N 64 5RA C53 H34 SING N N 65 5RA C54 H35 SING N N 66 5RA C54 H36 SING N N 67 5RA C55 H37 SING N N 68 5RA C55 H38 SING N N 69 5RA C66 H39 SING N N 70 5RA C66 H40 SING N N 71 5RA C66 H41 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5RA InChI InChI 1.03 "InChI=1S/C27H37N5/c1-29-11-3-13-31(17-15-29)21-23-5-8-25(9-6-23)27-10-7-24(19-26(27)20-28)22-32-14-4-12-30(2)16-18-32/h5-10,19H,3-4,11-18,21-22H2,1-2H3" 5RA InChIKey InChI 1.03 MJTWJYMXCDQAOT-UHFFFAOYSA-N 5RA SMILES_CANONICAL CACTVS 3.385 "CN1CCCN(CC1)Cc2ccc(cc2)c3ccc(CN4CCCN(C)CC4)cc3C#N" 5RA SMILES CACTVS 3.385 "CN1CCCN(CC1)Cc2ccc(cc2)c3ccc(CN4CCCN(C)CC4)cc3C#N" 5RA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CN1CCCN(CC1)Cc2ccc(cc2)c3ccc(cc3C#N)CN4CCCN(CC4)C" 5RA SMILES "OpenEye OEToolkits" 2.0.4 "CN1CCCN(CC1)Cc2ccc(cc2)c3ccc(cc3C#N)CN4CCCN(CC4)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5RA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "5-[(4-methyl-1,4-diazepan-1-yl)methyl]-2-[4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5RA "Create component" 2015-11-16 RCSB 5RA "Initial release" 2016-01-05 RCSB #