data_5RK # _chem_comp.id 5RK _chem_comp.name "(2R,3R,4R,5S)-1-[(4-{[4-(furan-2-yl)-2-methylanilino]methyl}phenyl)methyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H30 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-23 _chem_comp.pdbx_modified_date 2022-07-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.516 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5RK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7REV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5RK N1 N1 N 0 1 N N N -35.316 -30.013 -69.051 4.553 -0.498 -0.109 N1 5RK 1 5RK C4 C1 C 0 1 N N S -34.452 -32.163 -70.093 4.519 1.915 -0.532 C4 5RK 2 5RK C5 C2 C 0 1 N N N -35.623 -31.413 -69.358 4.126 0.534 -1.063 C5 5RK 3 5RK C6 C3 C 0 1 N N N -33.656 -28.430 -68.247 6.417 -1.612 1.022 C6 5RK 4 5RK C7 C4 C 0 1 N N N -36.305 -29.282 -68.704 4.071 -1.824 -0.518 C7 5RK 5 5RK C8 C5 C 0 1 Y N N -36.974 -29.670 -67.329 2.564 -1.832 -0.521 C8 5RK 6 5RK C10 C6 C 0 1 Y N N -36.857 -29.678 -64.876 0.490 -2.201 0.618 C10 5RK 7 5RK C13 C7 C 0 1 Y N N -38.186 -30.399 -67.246 1.873 -1.483 -1.666 C13 5RK 8 5RK C15 C8 C 0 1 Y N N -40.684 -29.354 -63.133 -3.572 -0.290 -0.044 C15 5RK 9 5RK C17 C9 C 0 1 Y N N -42.729 -28.058 -63.122 -5.391 1.199 0.431 C17 5RK 10 5RK C20 C10 C 0 1 Y N N -39.946 -28.185 -62.903 -4.472 -1.302 -0.359 C20 5RK 11 5RK C21 C11 C 0 1 N N N -42.889 -30.555 -63.489 -3.057 2.053 0.690 C21 5RK 12 5RK C22 C12 C 0 1 Y N N -42.786 -25.551 -62.790 -7.751 0.439 0.198 C22 5RK 13 5RK C24 C13 C 0 1 Y N N -44.444 -24.010 -62.522 -9.960 0.206 0.130 C24 5RK 14 5RK C1 C14 C 0 1 N N R -34.030 -29.903 -68.337 6.012 -0.496 0.057 C1 5RK 15 5RK C11 C15 C 0 1 Y N N -38.056 -30.390 -64.787 -0.200 -1.847 -0.526 C11 5RK 16 5RK C12 C16 C 0 1 Y N N -38.721 -30.767 -65.972 0.491 -1.490 -1.669 C12 5RK 17 5RK C14 C17 C 0 1 N N N -38.582 -30.770 -63.377 -1.707 -1.850 -0.528 C14 5RK 18 5RK C16 C18 C 0 1 Y N N -42.074 -29.287 -63.241 -4.036 0.959 0.350 C16 5RK 19 5RK C18 C19 C 0 1 Y N N -42.009 -26.887 -62.888 -6.298 0.185 0.114 C18 5RK 20 5RK C19 C20 C 0 1 Y N N -40.605 -26.952 -62.790 -5.828 -1.069 -0.281 C19 5RK 21 5RK C2 C21 C 0 1 N N R -32.908 -30.647 -69.188 6.461 0.854 0.621 C2 5RK 22 5RK C23 C22 C 0 1 Y N N -44.146 -25.419 -62.421 -8.735 -0.457 -0.082 C23 5RK 23 5RK C25 C23 C 0 1 Y N N -43.233 -23.426 -62.943 -9.667 1.458 0.532 C25 5RK 24 5RK C3 C24 C 0 1 N N R -33.202 -32.066 -69.380 6.037 1.969 -0.339 C3 5RK 25 5RK C9 C25 C 0 1 Y N N -36.325 -29.326 -66.123 1.873 -2.193 0.620 C9 5RK 26 5RK N2 N2 N 0 1 N N N -40.026 -30.659 -63.261 -2.198 -0.531 -0.118 N2 5RK 27 5RK O1 O1 O 0 1 N N N -34.763 -33.541 -70.250 4.122 2.917 -1.470 O1 5RK 28 5RK O2 O2 O 0 1 N N N -32.161 -32.712 -70.236 6.403 3.236 0.210 O2 5RK 29 5RK O3 O3 O 0 1 N N N -31.595 -30.453 -68.647 7.883 0.862 0.763 O3 5RK 30 5RK O4 O4 O 0 1 N N N -33.775 -27.933 -69.556 5.858 -1.352 2.312 O4 5RK 31 5RK O5 O5 O 0 1 Y N N -42.311 -24.355 -63.089 -8.331 1.596 0.569 O5 5RK 32 5RK H2 H2 H 0 1 N N N -34.336 -31.701 -71.084 4.024 2.092 0.423 H2 5RK 33 5RK H3 H3 H 0 1 N N N -36.514 -31.441 -70.003 4.611 0.363 -2.024 H3 5RK 34 5RK H4 H4 H 0 1 N N N -35.836 -31.938 -68.415 3.044 0.487 -1.188 H4 5RK 35 5RK H5 H5 H 0 1 N N N -32.623 -28.317 -67.885 6.044 -2.567 0.651 H5 5RK 36 5RK H6 H6 H 0 1 N N N -34.342 -27.900 -67.570 7.503 -1.651 1.098 H6 5RK 37 5RK H7 H7 H 0 1 N N N -35.951 -28.243 -68.630 4.438 -2.051 -1.519 H7 5RK 38 5RK H8 H8 H 0 1 N N N -37.073 -29.353 -69.489 4.437 -2.575 0.182 H8 5RK 39 5RK H9 H9 H 0 1 N N N -36.335 -29.396 -63.974 -0.050 -2.479 1.510 H9 5RK 40 5RK H10 H10 H 0 1 N N N -38.708 -30.678 -68.149 2.414 -1.205 -2.559 H10 5RK 41 5RK H11 H11 H 0 1 N N N -43.804 -28.015 -63.212 -5.751 2.170 0.736 H11 5RK 42 5RK H12 H12 H 0 1 N N N -38.871 -28.233 -62.813 -4.108 -2.272 -0.664 H12 5RK 43 5RK H13 H13 H 0 1 N N N -43.171 -31.004 -62.525 -2.824 2.625 -0.208 H13 5RK 44 5RK H14 H14 H 0 1 N N N -43.797 -30.302 -64.055 -3.496 2.714 1.438 H14 5RK 45 5RK H15 H15 H 0 1 N N N -42.285 -31.272 -64.065 -2.143 1.612 1.087 H15 5RK 46 5RK H16 H16 H 0 1 N N N -45.383 -23.516 -62.320 -10.948 -0.212 0.002 H16 5RK 47 5RK H17 H17 H 0 1 N N N -34.090 -30.349 -67.333 6.488 -0.662 -0.910 H17 5RK 48 5RK H18 H18 H 0 1 N N N -39.638 -31.336 -65.917 -0.049 -1.217 -2.564 H18 5RK 49 5RK H19 H19 H 0 1 N N N -38.292 -31.809 -63.163 -2.069 -2.077 -1.530 H19 5RK 50 5RK H20 H20 H 0 1 N N N -38.118 -30.100 -62.638 -2.070 -2.605 0.169 H20 5RK 51 5RK H21 H21 H 0 1 N N N -40.034 -26.050 -62.627 -6.526 -1.855 -0.526 H21 5RK 52 5RK H22 H22 H 0 1 N N N -32.928 -30.176 -70.182 5.997 1.014 1.594 H22 5RK 53 5RK H23 H23 H 0 1 N N N -44.821 -26.209 -62.125 -8.602 -1.480 -0.404 H23 5RK 54 5RK H24 H24 H 0 1 N N N -43.083 -22.371 -63.120 -10.386 2.225 0.778 H24 5RK 55 5RK H25 H25 H 0 1 N N N -33.265 -32.581 -68.410 6.532 1.830 -1.300 H25 5RK 56 5RK H26 H26 H 0 1 N N N -35.395 -28.778 -66.163 2.412 -2.470 1.514 H26 5RK 57 5RK H27 H27 H 0 1 N N N -40.409 -31.090 -64.078 -1.570 0.174 0.101 H27 5RK 58 5RK H28 H28 H 0 1 N N N -35.585 -33.629 -70.718 3.170 2.940 -1.641 H28 5RK 59 5RK H29 H29 H 0 1 N N N -31.319 -32.668 -69.799 6.160 3.990 -0.344 H29 5RK 60 5RK H30 H30 H 0 1 N N N -31.433 -29.524 -68.534 8.238 1.689 1.117 H30 5RK 61 5RK H31 H31 H 0 1 N N N -33.553 -27.009 -69.566 6.074 -2.021 2.976 H31 5RK 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5RK O1 C4 SING N N 1 5RK O2 C3 SING N N 2 5RK C4 C3 SING N N 3 5RK C4 C5 SING N N 4 5RK O4 C6 SING N N 5 5RK C3 C2 SING N N 6 5RK C5 N1 SING N N 7 5RK C2 O3 SING N N 8 5RK C2 C1 SING N N 9 5RK N1 C7 SING N N 10 5RK N1 C1 SING N N 11 5RK C7 C8 SING N N 12 5RK C1 C6 SING N N 13 5RK C8 C13 DOUB Y N 14 5RK C8 C9 SING Y N 15 5RK C13 C12 SING Y N 16 5RK C9 C10 DOUB Y N 17 5RK C12 C11 DOUB Y N 18 5RK C10 C11 SING Y N 19 5RK C11 C14 SING N N 20 5RK C21 C16 SING N N 21 5RK C14 N2 SING N N 22 5RK N2 C15 SING N N 23 5RK C16 C15 DOUB Y N 24 5RK C16 C17 SING Y N 25 5RK C15 C20 SING Y N 26 5RK C17 C18 DOUB Y N 27 5RK O5 C25 SING Y N 28 5RK O5 C22 SING Y N 29 5RK C25 C24 DOUB Y N 30 5RK C20 C19 DOUB Y N 31 5RK C18 C19 SING Y N 32 5RK C18 C22 SING N N 33 5RK C22 C23 DOUB Y N 34 5RK C24 C23 SING Y N 35 5RK C4 H2 SING N N 36 5RK C5 H3 SING N N 37 5RK C5 H4 SING N N 38 5RK C6 H5 SING N N 39 5RK C6 H6 SING N N 40 5RK C7 H7 SING N N 41 5RK C7 H8 SING N N 42 5RK C10 H9 SING N N 43 5RK C13 H10 SING N N 44 5RK C17 H11 SING N N 45 5RK C20 H12 SING N N 46 5RK C21 H13 SING N N 47 5RK C21 H14 SING N N 48 5RK C21 H15 SING N N 49 5RK C24 H16 SING N N 50 5RK C1 H17 SING N N 51 5RK C12 H18 SING N N 52 5RK C14 H19 SING N N 53 5RK C14 H20 SING N N 54 5RK C19 H21 SING N N 55 5RK C2 H22 SING N N 56 5RK C23 H23 SING N N 57 5RK C25 H24 SING N N 58 5RK C3 H25 SING N N 59 5RK C9 H26 SING N N 60 5RK N2 H27 SING N N 61 5RK O1 H28 SING N N 62 5RK O2 H29 SING N N 63 5RK O3 H30 SING N N 64 5RK O4 H31 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5RK SMILES ACDLabs 12.01 "OCC1C(O)C(O)C(O)CN1Cc1ccc(cc1)CNc1ccc(cc1C)c1ccco1" 5RK InChI InChI 1.03 "InChI=1S/C25H30N2O5/c1-16-11-19(23-3-2-10-32-23)8-9-20(16)26-12-17-4-6-18(7-5-17)13-27-14-22(29)25(31)24(30)21(27)15-28/h2-11,21-22,24-26,28-31H,12-15H2,1H3/t21-,22+,24-,25-/m1/s1" 5RK InChIKey InChI 1.03 KMBXDPSROWUABB-PEISPCAHSA-N 5RK SMILES_CANONICAL CACTVS 3.385 "Cc1cc(ccc1NCc2ccc(CN3C[C@H](O)[C@@H](O)[C@H](O)[C@H]3CO)cc2)c4occc4" 5RK SMILES CACTVS 3.385 "Cc1cc(ccc1NCc2ccc(CN3C[CH](O)[CH](O)[CH](O)[CH]3CO)cc2)c4occc4" 5RK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1NCc2ccc(cc2)CN3C[C@@H]([C@H]([C@@H]([C@H]3CO)O)O)O)c4ccco4" 5RK SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1NCc2ccc(cc2)CN3CC(C(C(C3CO)O)O)O)c4ccco4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5RK "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-1-[(4-{[4-(furan-2-yl)-2-methylanilino]methyl}phenyl)methyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" 5RK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[[4-[[[4-(furan-2-yl)-2-methyl-phenyl]amino]methyl]phenyl]methyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5RK "Create component" 2021-07-23 RCSB 5RK "Initial release" 2022-08-03 RCSB #