data_5RV # _chem_comp.id 5RV _chem_comp.name "2-[(2-azanyl-6-oxidanylidene-3,9-dihydropurin-8-yl)sulfanylmethyl]benzenecarbonitrile" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H10 N6 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-11-18 _chem_comp.pdbx_modified_date 2016-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 298.323 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5RV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5ETL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5RV C1 C1 C 0 1 N N N -9.030 9.389 -19.324 -3.438 -1.414 -1.455 C1 5RV 1 5RV C2 C2 C 0 1 Y N N -7.577 6.100 -18.738 -6.068 0.310 0.516 C2 5RV 2 5RV C3 C3 C 0 1 Y N N -6.229 6.396 -18.776 -5.306 0.924 1.494 C3 5RV 3 5RV C4 C4 C 0 1 Y N N -8.486 7.115 -18.923 -5.462 -0.460 -0.454 C4 5RV 4 5RV C5 C5 C 0 1 Y N N -5.786 7.687 -18.998 -3.930 0.774 1.503 C5 5RV 5 5RV C6 C6 C 0 1 Y N N -8.035 8.404 -19.143 -4.074 -0.616 -0.451 C6 5RV 6 5RV C7 C7 C 0 1 Y N N -6.680 8.727 -19.197 -3.310 0.011 0.535 C7 5RV 7 5RV C8 C8 C 0 1 Y N N -3.872 8.296 -22.866 2.461 -0.284 0.346 C8 5RV 8 5RV C9 C9 C 0 1 Y N N -5.147 7.859 -23.142 2.842 0.788 -0.449 C9 5RV 9 5RV C10 C10 C 0 1 N N N -2.792 7.599 -23.345 3.510 -1.151 0.887 C10 5RV 10 5RV C11 C11 C 0 1 N N N -4.262 6.140 -24.314 5.109 0.162 -0.157 C11 5RV 11 5RV C12 C12 C 0 1 Y N N -5.380 9.594 -21.984 0.645 0.743 -0.264 C12 5RV 12 5RV C13 C13 C 0 1 N N N -6.129 10.138 -19.427 -1.812 -0.150 0.546 C13 5RV 13 5RV N14 N1 N 0 1 N N N -9.849 10.187 -19.533 -2.932 -2.048 -2.251 N14 5RV 14 5RV N15 N2 N 0 1 N N N -5.375 6.761 -23.882 4.177 0.994 -0.688 N15 5RV 15 5RV N16 N3 N 0 1 Y N N -6.093 8.675 -22.591 1.693 1.423 -0.823 N16 5RV 16 5RV N17 N4 N 0 1 N N N -2.996 6.502 -24.080 4.790 -0.868 0.597 N17 5RV 17 5RV N18 N5 N 0 1 Y N N -4.033 9.422 -22.109 1.106 -0.270 0.429 N18 5RV 18 5RV N19 N6 N 0 1 N N N -4.407 4.990 -25.090 6.433 0.401 -0.419 N19 5RV 19 5RV O20 O1 O 0 1 N N N -1.502 7.973 -23.110 3.227 -2.111 1.587 O20 5RV 20 5RV S21 S1 S 0 1 N N N -6.010 10.922 -21.093 -1.056 1.162 -0.445 S21 5RV 21 5RV H1 H1 H 0 1 N N N -7.912 5.088 -18.566 -7.142 0.431 0.515 H1 5RV 22 5RV H2 H2 H 0 1 N N N -5.508 5.605 -18.630 -5.786 1.523 2.253 H2 5RV 23 5RV H3 H3 H 0 1 N N N -9.545 6.907 -18.897 -6.059 -0.943 -1.214 H3 5RV 24 5RV H4 H4 H 0 1 N N N -4.725 7.888 -19.017 -3.341 1.256 2.269 H4 5RV 25 5RV H5 H5 H 0 1 N N N -5.106 10.131 -19.023 -1.447 -0.087 1.571 H5 5RV 26 5RV H6 H6 H 0 1 N N N -6.757 10.809 -18.823 -1.548 -1.121 0.126 H6 5RV 27 5RV H7 H7 H 0 1 N N N -6.295 6.432 -24.094 4.457 1.741 -1.239 H7 5RV 28 5RV H8 H8 H 0 1 N N N -7.088 8.592 -22.639 1.630 2.212 -1.384 H8 5RV 29 5RV H10 H10 H 0 1 N N N -3.598 4.507 -25.424 7.114 -0.183 -0.051 H10 5RV 30 5RV H11 H11 H 0 1 N N N -5.320 4.649 -25.313 6.688 1.156 -0.973 H11 5RV 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5RV N19 C11 SING N N 1 5RV C11 N17 DOUB N N 2 5RV C11 N15 SING N N 3 5RV N17 C10 SING N N 4 5RV N15 C9 SING N N 5 5RV C10 O20 DOUB N N 6 5RV C10 C8 SING N N 7 5RV C9 C8 DOUB Y N 8 5RV C9 N16 SING Y N 9 5RV C8 N18 SING Y N 10 5RV N16 C12 SING Y N 11 5RV N18 C12 DOUB Y N 12 5RV C12 S21 SING N N 13 5RV S21 C13 SING N N 14 5RV N14 C1 TRIP N N 15 5RV C13 C7 SING N N 16 5RV C1 C6 SING N N 17 5RV C7 C6 DOUB Y N 18 5RV C7 C5 SING Y N 19 5RV C6 C4 SING Y N 20 5RV C5 C3 DOUB Y N 21 5RV C4 C2 DOUB Y N 22 5RV C3 C2 SING Y N 23 5RV C2 H1 SING N N 24 5RV C3 H2 SING N N 25 5RV C4 H3 SING N N 26 5RV C5 H4 SING N N 27 5RV C13 H5 SING N N 28 5RV C13 H6 SING N N 29 5RV N15 H7 SING N N 30 5RV N16 H8 SING N N 31 5RV N19 H10 SING N N 32 5RV N19 H11 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5RV InChI InChI 1.03 "InChI=1S/C13H10N6OS/c14-5-7-3-1-2-4-8(7)6-21-13-16-9-10(18-13)17-12(15)19-11(9)20/h1-4H,6H2,(H4,15,16,17,18,19,20)" 5RV InChIKey InChI 1.03 UBLPQTIVHIXXSM-UHFFFAOYSA-N 5RV SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2nc([nH]c2N1)SCc3ccccc3C#N" 5RV SMILES CACTVS 3.385 "NC1=NC(=O)c2nc([nH]c2N1)SCc3ccccc3C#N" 5RV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1ccc(c(c1)CSc2[nH]c3c(n2)C(=O)N=C(N3)N)C#N" 5RV SMILES "OpenEye OEToolkits" 2.0.4 "c1ccc(c(c1)CSc2[nH]c3c(n2)C(=O)N=C(N3)N)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5RV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "2-[(2-azanyl-6-oxidanylidene-3,9-dihydropurin-8-yl)sulfanylmethyl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5RV "Create component" 2015-11-18 RCSB 5RV "Initial release" 2016-05-04 RCSB #