data_5SP # _chem_comp.id 5SP _chem_comp.name 5-O-phosphono-D-xylulose _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H11 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "D-xylulose 5-phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-03-12 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.110 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5SP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3LQU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5SP O1 O1 O 0 1 N N N -9.722 -21.772 20.480 5.076 1.358 0.057 O1 5SP 1 5SP C2 C2 C 0 1 N N N -8.833 -22.674 21.065 3.802 1.179 -0.566 C2 5SP 2 5SP C3 C3 C 0 1 N N N -8.005 -23.537 20.150 3.226 -0.153 -0.159 C3 5SP 3 5SP O4 O4 O 0 1 N N N -8.222 -23.523 18.956 3.843 -0.875 0.587 O4 5SP 4 5SP C5 C5 C 0 1 N N S -6.994 -24.521 20.709 1.881 -0.584 -0.683 C5 5SP 5 5SP C6 C6 C 0 1 N N R -7.476 -25.291 21.937 0.779 0.191 0.042 C6 5SP 6 5SP C7 C7 C 0 1 N N N -7.534 -26.781 21.671 -0.589 -0.334 -0.399 C7 5SP 7 5SP O8 O8 O 0 1 N N N -7.304 -27.184 20.343 -1.618 0.465 0.188 O8 5SP 8 5SP P9 P9 P 0 1 N N N -6.330 -28.399 20.084 -3.186 0.197 -0.061 P9 5SP 9 5SP O10 O10 O 0 1 N N N -6.346 -29.216 21.361 -3.461 0.192 -1.515 O10 5SP 10 5SP O11 O11 O 0 1 N N N -4.874 -27.894 19.838 -3.593 -1.229 0.567 O11 5SP 11 5SP O12 O12 O 0 1 N N N -6.834 -29.231 18.837 -4.048 1.360 0.644 O12 5SP 12 5SP O13 O13 O 0 1 N N N -5.687 -24.038 20.754 1.707 -1.984 -0.456 O13 5SP 13 5SP O14 O14 O 0 1 N N N -6.888 -24.957 23.142 0.923 0.016 1.453 O14 5SP 14 5SP HO1 HO1 H 0 1 N N N -9.705 -21.877 19.536 5.506 2.196 -0.161 HO1 5SP 15 5SP H2 H2 H 0 1 N N N -8.128 -22.081 21.666 3.129 1.977 -0.251 H2 5SP 16 5SP H2A H2A H 0 1 N N N -9.434 -23.355 21.686 3.919 1.209 -1.649 H2A 5SP 17 5SP H5 H5 H 0 1 N N N -6.922 -25.316 19.952 1.825 -0.380 -1.753 H5 5SP 18 5SP H6 H6 H 0 1 N N N -8.507 -24.942 22.095 0.858 1.250 -0.203 H6 5SP 19 5SP H7 H7 H 0 1 N N N -6.762 -27.255 22.295 -0.664 -0.283 -1.485 H7 5SP 20 5SP H7A H7A H 0 1 N N N -8.542 -27.123 21.947 -0.703 -1.368 -0.075 H7A 5SP 21 5SP HO11 HO11 H 0 0 N N N -4.309 -28.203 20.536 -3.440 -1.297 1.519 HO11 5SP 22 5SP HO12 HO12 H 0 0 N N N -7.062 -30.111 19.114 -5.003 1.262 0.535 HO12 5SP 23 5SP HO13 HO13 H 0 0 N N N -5.114 -24.706 21.113 1.745 -2.239 0.476 HO13 5SP 24 5SP HO14 HO14 H 0 0 N N N -7.258 -25.492 23.834 0.864 -0.904 1.743 HO14 5SP 25 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5SP O1 C2 SING N N 1 5SP C2 C3 SING N N 2 5SP C3 O4 DOUB N N 3 5SP C3 C5 SING N N 4 5SP C5 C6 SING N N 5 5SP C5 O13 SING N N 6 5SP C6 C7 SING N N 7 5SP C6 O14 SING N N 8 5SP C7 O8 SING N N 9 5SP O8 P9 SING N N 10 5SP P9 O10 DOUB N N 11 5SP P9 O11 SING N N 12 5SP P9 O12 SING N N 13 5SP O1 HO1 SING N N 14 5SP C2 H2 SING N N 15 5SP C2 H2A SING N N 16 5SP C5 H5 SING N N 17 5SP C6 H6 SING N N 18 5SP C7 H7 SING N N 19 5SP C7 H7A SING N N 20 5SP O11 HO11 SING N N 21 5SP O12 HO12 SING N N 22 5SP O13 HO13 SING N N 23 5SP O14 HO14 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5SP SMILES ACDLabs 12.01 "O=P(OCC(O)C(O)C(=O)CO)(O)O" 5SP SMILES_CANONICAL CACTVS 3.370 "OCC(=O)[C@@H](O)[C@H](O)CO[P](O)(O)=O" 5SP SMILES CACTVS 3.370 "OCC(=O)[CH](O)[CH](O)CO[P](O)(O)=O" 5SP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C([C@H]([C@@H](C(=O)CO)O)O)OP(=O)(O)O" 5SP SMILES "OpenEye OEToolkits" 1.7.0 "C(C(C(C(=O)CO)O)O)OP(=O)(O)O" 5SP InChI InChI 1.03 "InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h4-6,8-9H,1-2H2,(H2,10,11,12)/t4-,5-/m1/s1" 5SP InChIKey InChI 1.03 FNZLKVNUWIIPSJ-RFZPGFLSSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5SP "SYSTEMATIC NAME" ACDLabs 12.01 5-O-phosphono-D-xylulose 5SP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S)-2,3,5-trihydroxy-4-oxo-pentyl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5SP "Create component" 2010-03-12 PDBJ 5SP "Modify synonyms" 2010-10-28 PDBJ 5SP "Modify descriptor" 2011-06-04 RCSB 5SP "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5SP _pdbx_chem_comp_synonyms.name "D-xylulose 5-phosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##