data_5SY
#
_chem_comp.id 5SY
_chem_comp.name "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2-methoxy-5-oxidanyl-4-[(2-oxidanylidenechromen-3-yl)methoxy]oxan-3-yl] ethanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H22 O9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-11-25
_chem_comp.pdbx_modified_date 2016-09-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 394.373
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5SY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5EXO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5SY C4 C1 C 0 1 N N S 18.444 -6.845 -0.547 -1.954 1.517 -0.522 C4 5SY 1
5SY C5 C2 C 0 1 N N R 19.929 -6.617 -0.733 -3.474 1.586 -0.357 C5 5SY 2
5SY C6 C3 C 0 1 N N N 20.428 -5.496 0.175 -4.030 2.718 -1.222 C6 5SY 3
5SY O6 O1 O 0 1 N N N 21.818 -5.290 -0.006 -5.432 2.858 -0.980 O6 5SY 4
5SY O5 O2 O 0 1 N N N 20.687 -7.805 -0.366 -4.053 0.345 -0.767 O5 5SY 5
5SY O4 O3 O 0 1 N N N 18.116 -7.092 0.832 -1.631 1.324 -1.901 O4 5SY 6
5SY C3 C4 C 0 1 N N S 18.050 -8.040 -1.408 -1.410 0.344 0.299 C3 5SY 7
5SY C2 C5 C 0 1 N N R 18.897 -9.228 -1.060 -2.101 -0.946 -0.153 C2 5SY 8
5SY C1 C6 C 0 1 N N S 20.368 -8.957 -1.133 -3.619 -0.782 -0.003 C1 5SY 9
5SY O1 O4 O 0 1 N N N 20.677 -8.635 -2.506 -3.942 -0.576 1.373 O1 5SY 10
5SY C C7 C 0 1 N N N 22.012 -8.157 -2.673 -5.341 -0.636 1.657 C 5SY 11
5SY O2 O5 O 0 1 N N N 18.547 -10.272 -2.027 -1.647 -2.054 0.668 O2 5SY 12
5SY CAC C8 C 0 1 N N N 18.070 -11.518 -1.451 -1.622 -3.267 0.094 CAC 5SY 13
5SY OAC O6 O 0 1 N N N 17.323 -11.519 -0.202 -1.969 -3.399 -1.056 OAC 5SY 14
5SY CAM C9 C 0 1 N N N 18.211 -12.827 -1.948 -1.161 -4.465 0.884 CAM 5SY 15
5SY O3 O7 O 0 1 N N N 16.725 -8.426 -1.143 -0.001 0.228 0.093 O3 5SY 16
5SY CA C10 C 0 1 N N N 15.757 -7.777 -1.918 0.786 0.977 1.022 CA 5SY 17
5SY CB C11 C 0 1 N N N 14.452 -8.540 -1.824 2.248 0.783 0.713 CB 5SY 18
5SY CC C12 C 0 1 N N N 14.305 -9.704 -1.161 2.626 -0.010 -0.321 CC 5SY 19
5SY CD C13 C 0 1 Y N N 13.015 -10.357 -1.120 4.059 -0.169 -0.585 CD 5SY 20
5SY CG C14 C 0 1 Y N N 12.853 -11.557 -0.432 4.515 -0.972 -1.634 CG 5SY 21
5SY CH C15 C 0 1 Y N N 11.598 -12.185 -0.400 5.858 -1.101 -1.855 CH 5SY 22
5SY CI C16 C 0 1 Y N N 10.509 -11.593 -1.058 6.771 -0.441 -1.045 CI 5SY 23
5SY CJ C17 C 0 1 Y N N 10.673 -10.376 -1.752 6.341 0.356 -0.004 CJ 5SY 24
5SY CE C18 C 0 1 Y N N 11.938 -9.764 -1.776 4.982 0.502 0.238 CE 5SY 25
5SY OA O8 O 0 1 N N N 12.124 -8.566 -2.448 4.540 1.277 1.251 OA 5SY 26
5SY CF C19 C 0 1 N N N 13.345 -7.950 -2.488 3.229 1.431 1.495 CF 5SY 27
5SY OB O9 O 0 1 N N N 13.566 -6.827 -3.111 2.877 2.140 2.420 OB 5SY 28
5SY H1 H1 H 0 1 N N N 17.901 -5.958 -0.906 -1.507 2.446 -0.170 H1 5SY 29
5SY H2 H2 H 0 1 N N N 20.128 -6.349 -1.781 -3.718 1.773 0.688 H2 5SY 30
5SY H3 H3 H 0 1 N N N 19.890 -4.568 -0.068 -3.523 3.650 -0.970 H3 5SY 31
5SY H4 H4 H 0 1 N N N 20.236 -5.767 1.224 -3.865 2.487 -2.274 H4 5SY 32
5SY H5 H5 H 0 1 N N N 22.112 -4.590 0.565 -5.852 3.560 -1.496 H5 5SY 33
5SY H6 H6 H 0 1 N N N 18.366 -6.341 1.357 -1.947 2.030 -2.481 H6 5SY 34
5SY H7 H7 H 0 1 N N N 18.184 -7.786 -2.470 -1.612 0.514 1.357 H7 5SY 35
5SY H8 H8 H 0 1 N N N 18.643 -9.566 -0.045 -1.858 -1.143 -1.197 H8 5SY 36
5SY H9 H9 H 0 1 N N N 20.936 -9.836 -0.795 -4.119 -1.681 -0.364 H9 5SY 37
5SY H10 H10 H 0 1 N N N 22.190 -7.929 -3.734 -5.503 -0.470 2.722 H10 5SY 38
5SY H11 H11 H 0 1 N N N 22.153 -7.246 -2.073 -5.861 0.133 1.086 H11 5SY 39
5SY H12 H12 H 0 1 N N N 22.722 -8.928 -2.340 -5.727 -1.617 1.380 H12 5SY 40
5SY H13 H13 H 0 1 N N N 17.718 -13.534 -1.265 -2.016 -4.920 1.385 H13 5SY 41
5SY H14 H14 H 0 1 N N N 17.746 -12.894 -2.943 -0.706 -5.191 0.211 H14 5SY 42
5SY H15 H15 H 0 1 N N N 19.280 -13.077 -2.025 -0.430 -4.150 1.628 H15 5SY 43
5SY H16 H16 H 0 1 N N N 16.088 -7.741 -2.966 0.535 2.035 0.941 H16 5SY 44
5SY H17 H17 H 0 1 N N N 15.612 -6.753 -1.544 0.580 0.631 2.035 H17 5SY 45
5SY H18 H18 H 0 1 N N N 15.151 -10.150 -0.660 1.890 -0.512 -0.933 H18 5SY 46
5SY H19 H19 H 0 1 N N N 13.694 -12.005 0.077 3.809 -1.489 -2.267 H19 5SY 47
5SY H20 H20 H 0 1 N N N 11.471 -13.119 0.128 6.211 -1.721 -2.665 H20 5SY 48
5SY H21 H21 H 0 1 N N N 9.541 -12.071 -1.033 7.829 -0.553 -1.231 H21 5SY 49
5SY H22 H22 H 0 1 N N N 9.836 -9.920 -2.259 7.060 0.865 0.621 H22 5SY 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5SY OB CF DOUB N N 1
5SY C O1 SING N N 2
5SY O1 C1 SING N N 3
5SY CF OA SING N N 4
5SY CF CB SING N N 5
5SY OA CE SING N N 6
5SY O2 CAC SING N N 7
5SY O2 C2 SING N N 8
5SY CAM CAC SING N N 9
5SY CA CB SING N N 10
5SY CA O3 SING N N 11
5SY CB CC DOUB N N 12
5SY CE CJ DOUB Y N 13
5SY CE CD SING Y N 14
5SY CJ CI SING Y N 15
5SY CAC OAC DOUB N N 16
5SY C3 O3 SING N N 17
5SY C3 C2 SING N N 18
5SY C3 C4 SING N N 19
5SY CC CD SING N N 20
5SY C1 C2 SING N N 21
5SY C1 O5 SING N N 22
5SY CD CG DOUB Y N 23
5SY CI CH DOUB Y N 24
5SY C5 C4 SING N N 25
5SY C5 O5 SING N N 26
5SY C5 C6 SING N N 27
5SY C4 O4 SING N N 28
5SY CG CH SING Y N 29
5SY O6 C6 SING N N 30
5SY C4 H1 SING N N 31
5SY C5 H2 SING N N 32
5SY C6 H3 SING N N 33
5SY C6 H4 SING N N 34
5SY O6 H5 SING N N 35
5SY O4 H6 SING N N 36
5SY C3 H7 SING N N 37
5SY C2 H8 SING N N 38
5SY C1 H9 SING N N 39
5SY C H10 SING N N 40
5SY C H11 SING N N 41
5SY C H12 SING N N 42
5SY CAM H13 SING N N 43
5SY CAM H14 SING N N 44
5SY CAM H15 SING N N 45
5SY CA H16 SING N N 46
5SY CA H17 SING N N 47
5SY CC H18 SING N N 48
5SY CG H19 SING N N 49
5SY CH H20 SING N N 50
5SY CI H21 SING N N 51
5SY CJ H22 SING N N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5SY InChI InChI 1.03 "InChI=1S/C19H22O9/c1-10(21)26-17-16(15(22)14(8-20)28-19(17)24-2)25-9-12-7-11-5-3-4-6-13(11)27-18(12)23/h3-7,14-17,19-20,22H,8-9H2,1-2H3/t14-,15+,16+,17-,19+/m1/s1"
5SY InChIKey InChI 1.03 CHNUXPKWFBMLRQ-RDHIYWLCSA-N
5SY SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1O[C@H](CO)[C@H](O)[C@H](OCC2=Cc3ccccc3OC2=O)[C@H]1OC(C)=O"
5SY SMILES CACTVS 3.385 "CO[CH]1O[CH](CO)[CH](O)[CH](OCC2=Cc3ccccc3OC2=O)[CH]1OC(C)=O"
5SY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC(=O)O[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1OC)CO)O)OCC2=Cc3ccccc3OC2=O"
5SY SMILES "OpenEye OEToolkits" 2.0.4 "CC(=O)OC1C(C(C(OC1OC)CO)O)OCC2=Cc3ccccc3OC2=O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5SY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2-methoxy-5-oxidanyl-4-[(2-oxidanylidenechromen-3-yl)methoxy]oxan-3-yl] ethanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5SY "Create component" 2015-11-25 RCSB
5SY "Initial release" 2016-10-05 RCSB
#