data_5TD # _chem_comp.id 5TD _chem_comp.name "4-[4-(3-oxidanylidene-3-pyrrolidin-1-yl-propyl)piperidin-1-yl]benzenecarbonitrile" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H25 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-11-28 _chem_comp.pdbx_modified_date 2016-01-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 311.421 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5TD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5F0F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5TD O O1 O 0 1 N N N 13.418 27.766 0.331 4.584 -1.805 -0.345 O 5TD 1 5TD C4 C1 C 0 1 N N N 13.833 28.304 1.389 4.393 -0.634 -0.092 C4 5TD 2 5TD N N1 N 0 1 N N N 14.947 28.965 1.629 5.427 0.230 -0.085 N 5TD 3 5TD C3 C2 C 0 1 N N N 15.844 29.512 0.577 5.339 1.672 0.210 C3 5TD 4 5TD C2 C3 C 0 1 N N N 16.881 30.319 1.299 6.756 2.064 0.698 C2 5TD 5 5TD C1 C4 C 0 1 N N N 16.758 29.900 2.758 7.654 1.188 -0.216 C1 5TD 6 5TD C C5 C 0 1 N N N 15.338 29.370 2.990 6.830 -0.109 -0.363 C 5TD 7 5TD C5 C6 C 0 1 N N N 13.011 28.338 2.588 3.000 -0.145 0.207 C5 5TD 8 5TD C6 C7 C 0 1 N N N 11.804 27.530 2.245 2.019 -1.317 0.127 C6 5TD 9 5TD C7 C8 C 0 1 N N N 10.460 27.497 2.907 0.604 -0.820 0.430 C7 5TD 10 5TD C11 C9 C 0 1 N N N 9.807 26.171 2.754 0.156 0.149 -0.667 C11 5TD 11 5TD C10 C10 C 0 1 N N N 8.723 25.805 3.806 -1.282 0.595 -0.391 C10 5TD 12 5TD N1 N2 N 0 1 N N N 8.104 27.011 4.330 -2.163 -0.579 -0.360 N1 5TD 13 5TD C9 C11 C 0 1 N N N 8.959 28.014 4.982 -1.780 -1.502 0.717 C9 5TD 14 5TD C8 C12 C 0 1 N N N 10.275 28.212 4.234 -0.358 -2.010 0.473 C8 5TD 15 5TD C12 C13 C 0 1 Y N N 6.719 27.247 4.044 -3.496 -0.199 -0.241 C12 5TD 16 5TD C17 C14 C 0 1 Y N N 6.114 28.498 4.240 -4.493 -1.169 -0.194 C17 5TD 17 5TD C16 C15 C 0 1 Y N N 4.757 28.701 3.922 -5.813 -0.797 -0.077 C16 5TD 18 5TD C15 C16 C 0 1 Y N N 4.008 27.648 3.383 -6.152 0.557 -0.005 C15 5TD 19 5TD C18 C17 C 0 1 N N N 2.766 27.830 3.050 -7.524 0.948 0.118 C18 5TD 20 5TD N2 N3 N 0 1 N N N 1.661 27.998 2.743 -8.613 1.258 0.215 N2 5TD 21 5TD C14 C18 C 0 1 Y N N 4.603 26.401 3.159 -5.148 1.529 -0.052 C14 5TD 22 5TD C13 C19 C 0 1 Y N N 5.941 26.218 3.485 -3.830 1.150 -0.164 C13 5TD 23 5TD H1 H1 H 0 1 N N N 15.276 30.151 -0.116 5.081 2.229 -0.691 H1 5TD 24 5TD H2 H2 H 0 1 N N N 16.319 28.694 0.016 4.604 1.855 0.994 H2 5TD 25 5TD H3 H3 H 0 1 N N N 17.886 30.091 0.914 6.948 3.124 0.531 H3 5TD 26 5TD H4 H4 H 0 1 N N N 16.681 31.395 1.187 6.895 1.804 1.747 H4 5TD 27 5TD H5 H5 H 0 1 N N N 17.491 29.110 2.981 7.803 1.666 -1.183 H5 5TD 28 5TD H6 H6 H 0 1 N N N 16.943 30.766 3.410 8.610 0.982 0.266 H6 5TD 29 5TD H7 H7 H 0 1 N N N 14.675 30.156 3.381 7.179 -0.856 0.350 H7 5TD 30 5TD H8 H8 H 0 1 N N N 15.337 28.513 3.680 6.924 -0.492 -1.379 H8 5TD 31 5TD H9 H9 H 0 1 N N N 13.547 27.892 3.438 2.972 0.284 1.209 H9 5TD 32 5TD H10 H10 H 0 1 N N N 12.728 29.372 2.835 2.717 0.615 -0.522 H10 5TD 33 5TD H11 H11 H 0 1 N N N 11.585 27.799 1.201 2.047 -1.745 -0.875 H11 5TD 34 5TD H12 H12 H 0 1 N N N 12.154 26.488 2.290 2.302 -2.077 0.855 H12 5TD 35 5TD H13 H13 H 0 1 N N N 9.861 28.125 2.231 0.596 -0.310 1.393 H13 5TD 36 5TD H14 H14 H 0 1 N N N 9.332 26.145 1.762 0.812 1.020 -0.674 H14 5TD 37 5TD H15 H15 H 0 1 N N N 10.594 25.404 2.804 0.202 -0.350 -1.635 H15 5TD 38 5TD H16 H16 H 0 1 N N N 7.953 25.178 3.332 -1.325 1.107 0.571 H16 5TD 39 5TD H17 H17 H 0 1 N N N 9.191 25.249 4.632 -1.609 1.275 -1.178 H17 5TD 40 5TD H18 H18 H 0 1 N N N 9.179 27.682 6.007 -1.821 -0.980 1.673 H18 5TD 41 5TD H19 H19 H 0 1 N N N 8.421 28.973 5.015 -2.470 -2.346 0.734 H19 5TD 42 5TD H20 H20 H 0 1 N N N 11.083 27.877 4.901 -0.319 -2.544 -0.477 H20 5TD 43 5TD H21 H21 H 0 1 N N N 10.382 29.290 4.042 -0.068 -2.683 1.281 H21 5TD 44 5TD H22 H22 H 0 1 N N N 6.696 29.315 4.640 -4.231 -2.216 -0.251 H22 5TD 45 5TD H23 H23 H 0 1 N N N 4.297 29.663 4.093 -6.586 -1.551 -0.041 H23 5TD 46 5TD H24 H24 H 0 1 N N N 4.028 25.590 2.737 -5.407 2.576 0.004 H24 5TD 47 5TD H25 H25 H 0 1 N N N 6.397 25.256 3.304 -3.054 1.900 -0.200 H25 5TD 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5TD O C4 DOUB N N 1 5TD C3 C2 SING N N 2 5TD C3 N SING N N 3 5TD C2 C1 SING N N 4 5TD C4 N SING N N 5 5TD C4 C5 SING N N 6 5TD N C SING N N 7 5TD C6 C5 SING N N 8 5TD C6 C7 SING N N 9 5TD N2 C18 TRIP N N 10 5TD C11 C7 SING N N 11 5TD C11 C10 SING N N 12 5TD C1 C SING N N 13 5TD C7 C8 SING N N 14 5TD C18 C15 SING N N 15 5TD C14 C15 DOUB Y N 16 5TD C14 C13 SING Y N 17 5TD C15 C16 SING Y N 18 5TD C13 C12 DOUB Y N 19 5TD C10 N1 SING N N 20 5TD C16 C17 DOUB Y N 21 5TD C12 C17 SING Y N 22 5TD C12 N1 SING N N 23 5TD C8 C9 SING N N 24 5TD N1 C9 SING N N 25 5TD C3 H1 SING N N 26 5TD C3 H2 SING N N 27 5TD C2 H3 SING N N 28 5TD C2 H4 SING N N 29 5TD C1 H5 SING N N 30 5TD C1 H6 SING N N 31 5TD C H7 SING N N 32 5TD C H8 SING N N 33 5TD C5 H9 SING N N 34 5TD C5 H10 SING N N 35 5TD C6 H11 SING N N 36 5TD C6 H12 SING N N 37 5TD C7 H13 SING N N 38 5TD C11 H14 SING N N 39 5TD C11 H15 SING N N 40 5TD C10 H16 SING N N 41 5TD C10 H17 SING N N 42 5TD C9 H18 SING N N 43 5TD C9 H19 SING N N 44 5TD C8 H20 SING N N 45 5TD C8 H21 SING N N 46 5TD C17 H22 SING N N 47 5TD C16 H23 SING N N 48 5TD C14 H24 SING N N 49 5TD C13 H25 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5TD InChI InChI 1.03 "InChI=1S/C19H25N3O/c20-15-17-3-6-18(7-4-17)21-13-9-16(10-14-21)5-8-19(23)22-11-1-2-12-22/h3-4,6-7,16H,1-2,5,8-14H2" 5TD InChIKey InChI 1.03 BLOJSAYUWXASOD-UHFFFAOYSA-N 5TD SMILES_CANONICAL CACTVS 3.385 "O=C(CCC1CCN(CC1)c2ccc(cc2)C#N)N3CCCC3" 5TD SMILES CACTVS 3.385 "O=C(CCC1CCN(CC1)c2ccc(cc2)C#N)N3CCCC3" 5TD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1cc(ccc1C#N)N2CCC(CC2)CCC(=O)N3CCCC3" 5TD SMILES "OpenEye OEToolkits" 2.0.4 "c1cc(ccc1C#N)N2CCC(CC2)CCC(=O)N3CCCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5TD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "4-[4-(3-oxidanylidene-3-pyrrolidin-1-yl-propyl)piperidin-1-yl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5TD "Create component" 2015-11-28 EBI 5TD "Initial release" 2016-02-03 RCSB #