data_5UD # _chem_comp.id 5UD _chem_comp.name 5-FLUOROURIDINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H11 F N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-12-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 262.192 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5UD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RXC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5UD F5 F5 F 0 1 N N N -23.229 -54.325 -3.789 -0.839 1.455 -4.074 F5 5UD 1 5UD C5 C5 C 0 1 N N N -22.404 -53.360 -3.327 -0.339 0.711 -3.063 C5 5UD 2 5UD C4 C4 C 0 1 N N N -21.140 -53.885 -2.756 0.550 -0.357 -3.330 C4 5UD 3 5UD O4 O4 O 0 1 N N N -20.872 -55.106 -2.708 0.874 -0.616 -4.476 O4 5UD 4 5UD N3 N3 N 0 1 N N N -20.297 -52.974 -2.291 1.037 -1.085 -2.305 N3 5UD 5 5UD C2 C2 C 0 1 N N N -20.554 -51.652 -2.331 0.684 -0.796 -1.039 C2 5UD 6 5UD O2 O2 O 0 1 N N N -19.659 -50.935 -1.860 1.131 -1.462 -0.125 O2 5UD 7 5UD C6 C6 C 0 1 N N N -22.636 -51.962 -3.354 -0.681 0.977 -1.783 C6 5UD 8 5UD N1 N1 N 0 1 N N N -21.722 -51.081 -2.870 -0.164 0.212 -0.771 N1 5UD 9 5UD "C1'" C1* C 0 1 N N R -22.010 -49.609 -2.881 -0.534 0.499 0.617 "C1'" 5UD 10 5UD "C2'" C2* C 0 1 N N R -21.121 -48.413 -2.475 -1.127 -0.760 1.299 "C2'" 5UD 11 5UD "O2'" O2* O 0 1 N N N -21.356 -47.703 -1.264 -2.530 -0.863 1.049 "O2'" 5UD 12 5UD "C3'" C3* C 0 1 N N S -20.848 -47.651 -3.763 -0.852 -0.476 2.799 "C3'" 5UD 13 5UD "O3'" O3* O 0 1 N N N -21.130 -46.275 -3.958 -2.017 0.060 3.428 "O3'" 5UD 14 5UD "C4'" C4* C 0 1 N N R -21.728 -48.255 -4.836 0.286 0.560 2.781 "C4'" 5UD 15 5UD "O4'" O4* O 0 1 N N N -22.623 -49.004 -4.022 0.639 0.789 1.406 "O4'" 5UD 16 5UD "C5'" C5* C 0 1 N N N -20.994 -49.252 -5.721 1.496 0.018 3.545 "C5'" 5UD 17 5UD "O5'" O5* O 0 1 N N N -21.706 -50.284 -6.373 2.549 0.983 3.516 "O5'" 5UD 18 5UD HN3 HN3 H 0 1 N N N -19.419 -53.302 -1.888 1.647 -1.819 -2.481 HN3 5UD 19 5UD H6 H6 H 0 1 N N N -23.567 -51.541 -3.769 -1.359 1.787 -1.560 H6 5UD 20 5UD "H1'" H1* H 0 1 N N N -22.579 -49.972 -1.993 -1.241 1.327 0.661 "H1'" 5UD 21 5UD "H2'" H2* H 0 1 N N N -20.169 -48.795 -2.036 -0.608 -1.660 0.970 "H2'" 5UD 22 5UD "HO2'" *HO2 H 0 0 N N N -20.809 -46.967 -1.014 -2.836 -1.663 1.498 "HO2'" 5UD 23 5UD "H3'" H3* H 0 1 N N N -19.736 -47.732 -3.763 -0.531 -1.386 3.306 "H3'" 5UD 24 5UD "HO3'" *HO3 H 0 0 N N N -20.959 -45.799 -4.762 -1.788 0.216 4.354 "HO3'" 5UD 25 5UD "H4'" H4* H 0 1 N N N -22.154 -47.487 -5.522 -0.051 1.491 3.236 "H4'" 5UD 26 5UD "H5'1" 1H5* H 0 0 N N N -20.419 -48.683 -6.488 1.837 -0.905 3.076 "H5'1" 5UD 27 5UD "H5'2" 2H5* H 0 0 N N N -20.174 -49.714 -5.123 1.214 -0.181 4.578 "H5'2" 5UD 28 5UD "HO5'" *HO5 H 0 0 N N N -21.247 -50.906 -6.925 3.291 0.603 4.007 "HO5'" 5UD 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5UD F5 C5 SING N N 1 5UD C5 C4 SING N N 2 5UD C5 C6 DOUB N N 3 5UD C4 O4 DOUB N N 4 5UD C4 N3 SING N N 5 5UD N3 C2 SING N N 6 5UD N3 HN3 SING N N 7 5UD C2 O2 DOUB N N 8 5UD C2 N1 SING N N 9 5UD C6 N1 SING N N 10 5UD C6 H6 SING N N 11 5UD N1 "C1'" SING N N 12 5UD "C1'" "C2'" SING N N 13 5UD "C1'" "O4'" SING N N 14 5UD "C1'" "H1'" SING N N 15 5UD "C2'" "O2'" SING N N 16 5UD "C2'" "C3'" SING N N 17 5UD "C2'" "H2'" SING N N 18 5UD "O2'" "HO2'" SING N N 19 5UD "C3'" "O3'" SING N N 20 5UD "C3'" "C4'" SING N N 21 5UD "C3'" "H3'" SING N N 22 5UD "O3'" "HO3'" SING N N 23 5UD "C4'" "O4'" SING N N 24 5UD "C4'" "C5'" SING N N 25 5UD "C4'" "H4'" SING N N 26 5UD "C5'" "O5'" SING N N 27 5UD "C5'" "H5'1" SING N N 28 5UD "C5'" "H5'2" SING N N 29 5UD "O5'" "HO5'" SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5UD SMILES ACDLabs 10.04 "FC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2O)CO" 5UD SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=C(F)C(=O)NC2=O" 5UD SMILES CACTVS 3.341 "OC[CH]1O[CH]([CH](O)[CH]1O)N2C=C(F)C(=O)NC2=O" 5UD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O)F" 5UD SMILES "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1C2C(C(C(O2)CO)O)O)F" 5UD InChI InChI 1.03 "InChI=1S/C9H11FN2O6/c10-3-1-12(9(17)11-7(3)16)8-6(15)5(14)4(2-13)18-8/h1,4-6,8,13-15H,2H2,(H,11,16,17)/t4-,5-,6-,8-/m1/s1" 5UD InChIKey InChI 1.03 FHIDNBAQOFJWCA-UAKXSSHOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5UD "SYSTEMATIC NAME" ACDLabs 10.04 5-fluorouridine 5UD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-fluoro-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5UD "Create component" 2003-12-19 RCSB 5UD "Modify descriptor" 2011-06-04 RCSB #