data_5UF # _chem_comp.id 5UF _chem_comp.name "(3~{S})-3-oxidanyldecanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H20 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Myrmicacin; 3-hydroxydecanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-12-02 _chem_comp.pdbx_modified_date 2020-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 188.264 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5UF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5F2N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5UF C1 C1 C 0 1 N N N 45.619 30.989 34.697 -4.340 0.125 0.207 C1 5UF 1 5UF C2 C2 C 0 1 N N N 44.814 32.125 35.280 -3.067 0.840 -0.163 C2 5UF 2 5UF C3 C3 C 0 1 N N S 43.889 31.735 36.428 -1.876 -0.097 0.047 C3 5UF 3 5UF C4 C4 C 0 1 N N N 43.096 32.974 36.852 -0.575 0.666 -0.209 C4 5UF 4 5UF C5 C5 C 0 1 N N N 41.988 32.627 37.846 0.618 -0.233 0.122 C5 5UF 5 5UF C6 C6 C 0 1 N N N 41.079 33.819 38.138 1.919 0.530 -0.134 C6 5UF 6 5UF O14 O1 O 0 1 N N N 44.672 31.250 37.530 -1.969 -1.197 -0.860 O14 5UF 7 5UF O13 O2 O 0 1 N N N 45.507 29.804 35.126 -5.520 0.757 0.102 O13 5UF 8 5UF O12 O3 O 0 1 N N N 46.411 31.306 33.786 -4.300 -1.019 0.595 O12 5UF 9 5UF C7 C7 C 0 1 N N N 40.193 33.475 39.331 3.112 -0.369 0.196 C7 5UF 10 5UF C8 C8 C 0 1 N N N 39.080 34.482 39.595 4.413 0.394 -0.060 C8 5UF 11 5UF C9 C9 C 0 1 N N N 38.087 33.763 40.507 5.605 -0.506 0.271 C9 5UF 12 5UF C10 C10 C 0 1 N N N 37.237 34.716 41.302 6.906 0.258 0.015 C10 5UF 13 5UF H1 H1 H 0 1 N N N 45.516 32.886 35.651 -3.111 1.142 -1.210 H1 5UF 14 5UF H2 H2 H 0 1 N N N 44.198 32.555 34.476 -2.950 1.723 0.465 H2 5UF 15 5UF H3 H3 H 0 1 N N N 43.190 30.960 36.082 -1.883 -0.469 1.072 H3 5UF 16 5UF H4 H4 H 0 1 N N N 43.783 33.693 37.322 -0.527 0.962 -1.257 H4 5UF 17 5UF H5 H5 H 0 1 N N N 42.643 33.430 35.959 -0.545 1.555 0.421 H5 5UF 18 5UF H6 H6 H 0 1 N N N 41.379 31.812 37.427 0.571 -0.529 1.170 H6 5UF 19 5UF H7 H7 H 0 1 N N N 42.449 32.294 38.788 0.588 -1.122 -0.508 H7 5UF 20 5UF H8 H8 H 0 1 N N N 41.691 34.703 38.373 1.967 0.826 -1.182 H8 5UF 21 5UF H9 H9 H 0 1 N N N 40.452 34.031 37.259 1.949 1.419 0.496 H9 5UF 22 5UF H10 H10 H 0 1 N N N 44.096 31.007 38.245 -1.968 -0.939 -1.792 H10 5UF 23 5UF H11 H11 H 0 1 N N N 46.104 29.237 34.652 -6.309 0.257 0.351 H11 5UF 24 5UF H12 H12 H 0 1 N N N 39.733 32.493 39.147 3.064 -0.665 1.244 H12 5UF 25 5UF H13 H13 H 0 1 N N N 40.828 33.420 40.228 3.082 -1.258 -0.434 H13 5UF 26 5UF H14 H14 H 0 1 N N N 39.481 35.377 40.093 4.460 0.690 -1.108 H14 5UF 27 5UF H15 H15 H 0 1 N N N 38.594 34.774 38.652 4.443 1.283 0.570 H15 5UF 28 5UF H16 H16 H 0 1 N N N 37.429 33.137 39.887 5.558 -0.801 1.319 H16 5UF 29 5UF H17 H17 H 0 1 N N N 38.648 33.125 41.205 5.576 -1.395 -0.359 H17 5UF 30 5UF H18 H18 H 0 1 N N N 36.544 34.146 41.938 7.756 -0.383 0.250 H18 5UF 31 5UF H19 H19 H 0 1 N N N 37.883 35.343 41.934 6.954 0.553 -1.033 H19 5UF 32 5UF H20 H20 H 0 1 N N N 36.663 35.355 40.615 6.936 1.147 0.645 H20 5UF 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5UF O12 C1 DOUB N N 1 5UF C1 O13 SING N N 2 5UF C1 C2 SING N N 3 5UF C2 C3 SING N N 4 5UF C3 C4 SING N N 5 5UF C3 O14 SING N N 6 5UF C4 C5 SING N N 7 5UF C5 C6 SING N N 8 5UF C6 C7 SING N N 9 5UF C7 C8 SING N N 10 5UF C8 C9 SING N N 11 5UF C9 C10 SING N N 12 5UF C2 H1 SING N N 13 5UF C2 H2 SING N N 14 5UF C3 H3 SING N N 15 5UF C4 H4 SING N N 16 5UF C4 H5 SING N N 17 5UF C5 H6 SING N N 18 5UF C5 H7 SING N N 19 5UF C6 H8 SING N N 20 5UF C6 H9 SING N N 21 5UF O14 H10 SING N N 22 5UF O13 H11 SING N N 23 5UF C7 H12 SING N N 24 5UF C7 H13 SING N N 25 5UF C8 H14 SING N N 26 5UF C8 H15 SING N N 27 5UF C9 H16 SING N N 28 5UF C9 H17 SING N N 29 5UF C10 H18 SING N N 30 5UF C10 H19 SING N N 31 5UF C10 H20 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5UF InChI InChI 1.03 "InChI=1S/C10H20O3/c1-2-3-4-5-6-7-9(11)8-10(12)13/h9,11H,2-8H2,1H3,(H,12,13)/t9-/m0/s1" 5UF InChIKey InChI 1.03 FYSSBMZUBSBFJL-VIFPVBQESA-N 5UF SMILES_CANONICAL CACTVS 3.385 "CCCCCCC[C@H](O)CC(O)=O" 5UF SMILES CACTVS 3.385 "CCCCCCC[CH](O)CC(O)=O" 5UF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CCCCCCC[C@@H](CC(=O)O)O" 5UF SMILES "OpenEye OEToolkits" 2.0.4 "CCCCCCCC(CC(=O)O)O" # _pdbx_chem_comp_identifier.comp_id 5UF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.4 _pdbx_chem_comp_identifier.identifier "(3~{S})-3-oxidanyldecanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5UF "Create component" 2015-12-02 RCSB 5UF "Initial release" 2015-12-29 RCSB 5UF "Modify synonyms" 2020-05-26 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 5UF Myrmicacin ? ? 2 5UF "3-hydroxydecanoic acid" ? ? #