data_5VA # _chem_comp.id 5VA _chem_comp.name "~{N}-methyl-1-(3-thiophen-3-ylphenyl)methanamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H13 N S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-12-07 _chem_comp.pdbx_modified_date 2023-02-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 203.303 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5VA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5F57 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5VA C14 C1 C 0 1 N N N 20.899 -6.388 1.444 4.896 1.955 0.372 C14 5VA 1 5VA N13 N1 N 0 1 N N N 20.107 -7.450 2.039 3.756 1.061 0.612 N13 5VA 2 5VA C12 C2 C 0 1 N N N 20.123 -8.553 1.121 3.225 0.534 -0.653 C12 5VA 3 5VA C2 C3 C 0 1 Y N N 19.291 -9.749 1.365 2.059 -0.377 -0.367 C2 5VA 4 5VA C3 C4 C 0 1 Y N N 18.752 -10.398 0.261 2.273 -1.728 -0.156 C3 5VA 5 5VA C4 C5 C 0 1 Y N N 17.965 -11.543 0.439 1.208 -2.569 0.107 C4 5VA 6 5VA C5 C6 C 0 1 Y N N 17.726 -12.029 1.723 -0.076 -2.066 0.159 C5 5VA 7 5VA C6 C7 C 0 1 Y N N 18.263 -11.384 2.819 -0.298 -0.707 -0.054 C6 5VA 8 5VA C1 C8 C 0 1 Y N N 19.060 -10.233 2.650 0.780 0.138 -0.312 C1 5VA 9 5VA C7 C9 C 0 1 Y N N 17.975 -11.963 4.200 -1.676 -0.160 0.001 C7 5VA 10 5VA C11 C10 C 0 1 Y N N 18.307 -11.343 5.450 -1.952 1.141 -0.201 C11 5VA 11 5VA S10 S1 S 0 1 Y N N 17.825 -12.312 6.658 -3.685 1.405 -0.057 S10 5VA 12 5VA C9 C11 C 0 1 Y N N 17.174 -13.551 5.846 -3.952 -0.300 0.277 C9 5VA 13 5VA C8 C12 C 0 1 Y N N 17.283 -13.310 4.430 -2.793 -0.953 0.260 C8 5VA 14 5VA H1 H1 H 0 1 N N N 20.913 -5.519 2.118 4.577 2.792 -0.249 H1 5VA 15 5VA H2 H2 H 0 1 N N N 21.927 -6.744 1.283 5.270 2.331 1.324 H2 5VA 16 5VA H3 H3 H 0 1 N N N 20.456 -6.097 0.480 5.688 1.405 -0.138 H3 5VA 17 5VA H4 H4 H 0 1 N N N 19.168 -7.138 2.184 3.034 1.528 1.140 H4 5VA 18 5VA H6 H6 H 0 1 N N N 21.165 -8.901 1.066 2.894 1.361 -1.281 H6 5VA 19 5VA H7 H7 H 0 1 N N N 19.818 -8.152 0.143 4.005 -0.026 -1.169 H7 5VA 20 5VA H8 H8 H 0 1 N N N 18.940 -10.020 -0.733 3.276 -2.126 -0.196 H8 5VA 21 5VA H9 H9 H 0 1 N N N 17.544 -12.048 -0.418 1.381 -3.623 0.271 H9 5VA 22 5VA H10 H10 H 0 1 N N N 17.120 -12.912 1.861 -0.908 -2.724 0.363 H10 5VA 23 5VA H11 H11 H 0 1 N N N 19.486 -9.733 3.507 0.614 1.193 -0.473 H11 5VA 24 5VA H12 H12 H 0 1 N N N 18.797 -10.388 5.568 -1.221 1.907 -0.418 H12 5VA 25 5VA H13 H13 H 0 1 N N N 16.726 -14.425 6.297 -4.915 -0.752 0.464 H13 5VA 26 5VA H14 H14 H 0 1 N N N 16.932 -13.974 3.654 -2.722 -2.016 0.437 H14 5VA 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5VA C3 C4 DOUB Y N 1 5VA C3 C2 SING Y N 2 5VA C4 C5 SING Y N 3 5VA C12 C2 SING N N 4 5VA C12 N13 SING N N 5 5VA C2 C1 DOUB Y N 6 5VA C14 N13 SING N N 7 5VA C5 C6 DOUB Y N 8 5VA C1 C6 SING Y N 9 5VA C6 C7 SING N N 10 5VA C7 C8 SING Y N 11 5VA C7 C11 DOUB Y N 12 5VA C8 C9 DOUB Y N 13 5VA C11 S10 SING Y N 14 5VA C9 S10 SING Y N 15 5VA C14 H1 SING N N 16 5VA C14 H2 SING N N 17 5VA C14 H3 SING N N 18 5VA N13 H4 SING N N 19 5VA C12 H6 SING N N 20 5VA C12 H7 SING N N 21 5VA C3 H8 SING N N 22 5VA C4 H9 SING N N 23 5VA C5 H10 SING N N 24 5VA C1 H11 SING N N 25 5VA C11 H12 SING N N 26 5VA C9 H13 SING N N 27 5VA C8 H14 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5VA InChI InChI 1.03 "InChI=1S/C12H13NS/c1-13-8-10-3-2-4-11(7-10)12-5-6-14-9-12/h2-7,9,13H,8H2,1H3" 5VA InChIKey InChI 1.03 SNXSVYZFYWVLHK-UHFFFAOYSA-N 5VA SMILES_CANONICAL CACTVS 3.385 "CNCc1cccc(c1)c2cscc2" 5VA SMILES CACTVS 3.385 "CNCc1cccc(c1)c2cscc2" 5VA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CNCc1cccc(c1)c2ccsc2" 5VA SMILES "OpenEye OEToolkits" 2.0.4 "CNCc1cccc(c1)c2ccsc2" # _pdbx_chem_comp_identifier.comp_id 5VA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.4 _pdbx_chem_comp_identifier.identifier "~{N}-methyl-1-(3-thiophen-3-ylphenyl)methanamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5VA "Create component" 2015-12-07 RCSB 5VA "Initial release" 2023-02-08 RCSB #