data_5VE
#
_chem_comp.id 5VE
_chem_comp.name "~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-6-(methylaminomethyl)-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H24 Cl F N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-12-09
_chem_comp.pdbx_modified_date 2016-03-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 446.906
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5VE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5F4L
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5VE C10 C1 C 0 1 Y N N -17.928 -59.655 21.210 3.098 -3.004 -0.591 C10 5VE 1
5VE C13 C2 C 0 1 N N R -15.430 -59.298 18.231 2.030 0.603 0.258 C13 5VE 2
5VE C15 C3 C 0 1 N N N -13.507 -57.788 17.761 -0.331 0.163 0.667 C15 5VE 3
5VE C17 C4 C 0 1 N N N -13.045 -56.320 17.590 -1.773 0.299 0.301 C17 5VE 4
5VE C20 C5 C 0 1 Y N N -11.250 -54.666 17.111 -4.072 -0.068 0.782 C20 5VE 5
5VE C21 C6 C 0 1 Y N N -11.589 -53.602 17.943 -4.494 0.048 -0.536 C21 5VE 6
5VE C22 C7 C 0 1 Y N N -11.109 -52.340 17.663 -5.832 0.253 -0.817 C22 5VE 7
5VE C24 C8 C 0 1 Y N N -10.292 -52.133 16.551 -6.752 0.343 0.217 C24 5VE 8
5VE C26 C9 C 0 1 Y N N -9.960 -53.193 15.720 -6.332 0.229 1.530 C26 5VE 9
5VE N N1 N 0 1 N N N -18.792 -58.658 23.284 4.056 -4.745 0.808 N 5VE 10
5VE C C10 C 0 1 N N N -18.935 -58.839 24.730 3.956 -6.130 1.288 C 5VE 11
5VE C00 C11 C 0 1 N N N -18.012 -59.780 22.727 2.963 -4.430 -0.121 C00 5VE 12
5VE CL25 CL1 CL 0 0 N N N -9.669 -50.547 16.172 -8.431 0.601 -0.137 CL25 5VE 13
5VE N01 N2 N 0 1 N N N -13.367 -63.074 17.888 6.517 4.851 0.014 N01 5VE 14
5VE C02 C12 C 0 1 N N N -13.102 -62.411 16.796 5.866 3.765 0.549 C02 5VE 15
5VE N03 N3 N 0 1 N N N -14.137 -61.625 16.171 4.750 3.257 -0.072 N03 5VE 16
5VE C04 C13 C 0 1 N N N -15.465 -61.575 16.750 4.056 2.100 0.498 C04 5VE 17
5VE C05 C14 C 0 1 N N R -15.909 -60.094 17.070 2.857 1.740 -0.381 C05 5VE 18
5VE C06 C15 C 0 1 N N N -17.325 -59.642 16.946 3.321 1.106 -1.709 C06 5VE 19
5VE C07 C16 C 0 1 Y N N -17.768 -59.422 18.417 3.342 -0.385 -1.451 C07 5VE 20
5VE C08 C17 C 0 1 Y N N -19.034 -59.415 19.044 3.957 -1.408 -2.152 C08 5VE 21
5VE C09 C18 C 0 1 Y N N -19.112 -59.530 20.435 3.835 -2.716 -1.724 C09 5VE 22
5VE C11 C19 C 0 1 Y N N -16.657 -59.663 20.583 2.480 -1.985 0.108 C11 5VE 23
5VE C12 C20 C 0 1 Y N N -16.583 -59.547 19.204 2.601 -0.674 -0.320 C12 5VE 24
5VE N14 N4 N 0 1 N N N -14.901 -58.025 18.067 0.616 0.737 -0.101 N14 5VE 25
5VE O16 O1 O 0 1 N N N -12.712 -58.728 17.647 -0.013 -0.464 1.656 O16 5VE 26
5VE O18 O2 O 0 1 N N N -13.867 -55.430 17.715 -2.091 0.926 -0.689 O18 5VE 27
5VE N19 N5 N 0 1 N N N -11.714 -56.017 17.310 -2.720 -0.275 1.069 N19 5VE 28
5VE C27 C21 C 0 1 Y N N -10.440 -54.446 15.998 -4.996 0.029 1.815 C27 5VE 29
5VE N28 N6 N 0 1 N N N -11.875 -62.460 16.261 6.307 3.216 1.646 N28 5VE 30
5VE F23 F1 F 0 1 N N N -11.431 -51.299 18.476 -6.244 0.366 -2.099 F23 5VE 31
5VE H1 H1 H 0 1 N N N -14.607 -59.899 18.645 2.147 0.613 1.341 H1 5VE 32
5VE H2 H2 H 0 1 N N N -12.224 -53.764 18.802 -3.777 -0.022 -1.341 H2 5VE 33
5VE H3 H3 H 0 1 N N N -9.327 -53.032 14.860 -7.050 0.303 2.334 H3 5VE 34
5VE H4 H4 H 0 1 N N N -18.317 -57.797 23.100 4.954 -4.574 0.382 H4 5VE 35
5VE H6 H6 H 0 1 N N N -19.516 -58.004 25.149 3.007 -6.268 1.805 H6 5VE 36
5VE H7 H7 H 0 1 N N N -19.457 -59.786 24.931 4.011 -6.813 0.440 H7 5VE 37
5VE H8 H8 H 0 1 N N N -17.939 -58.863 25.197 4.777 -6.337 1.974 H8 5VE 38
5VE H9 H9 H 0 1 N N N -18.503 -60.729 22.988 2.006 -4.557 0.386 H9 5VE 39
5VE H10 H10 H 0 1 N N N -16.997 -59.764 23.151 3.010 -5.101 -0.979 H10 5VE 40
5VE H11 H11 H 0 1 N N N -12.653 -63.620 18.327 6.189 5.259 -0.803 H11 5VE 41
5VE H12 H12 H 0 1 N N N -14.284 -63.036 18.286 7.305 5.209 0.452 H12 5VE 42
5VE H13 H13 H 0 1 N N N -13.938 -61.113 15.336 4.422 3.665 -0.889 H13 5VE 43
5VE H14 H14 H 0 1 N N N -16.180 -62.016 16.040 4.740 1.252 0.544 H14 5VE 44
5VE H15 H15 H 0 1 N N N -15.469 -62.158 17.683 3.711 2.343 1.503 H15 5VE 45
5VE H16 H16 H 0 1 N N N -15.439 -59.557 16.233 2.235 2.616 -0.562 H16 5VE 46
5VE H17 H17 H 0 1 N N N -17.390 -58.706 16.372 2.616 1.342 -2.507 H17 5VE 47
5VE H18 H18 H 0 1 N N N -17.942 -60.413 16.461 4.319 1.460 -1.969 H18 5VE 48
5VE H19 H19 H 0 1 N N N -19.934 -59.322 18.454 4.532 -1.184 -3.039 H19 5VE 49
5VE H20 H20 H 0 1 N N N -20.076 -59.524 20.922 4.315 -3.512 -2.273 H20 5VE 50
5VE H21 H21 H 0 1 N N N -15.757 -59.758 21.173 1.901 -2.212 0.991 H21 5VE 51
5VE H22 H22 H 0 1 N N N -15.510 -57.238 18.165 0.362 1.238 -0.892 H22 5VE 52
5VE H23 H23 H 0 1 N N N -11.055 -56.766 17.244 -2.463 -0.831 1.820 H23 5VE 53
5VE H24 H24 H 0 1 N N N -10.188 -55.271 15.348 -4.670 -0.060 2.841 H24 5VE 54
5VE H25 H25 H 0 1 N N N -11.257 -63.038 16.794 7.095 3.575 2.085 H25 5VE 55
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5VE C26 C27 DOUB Y N 1
5VE C26 C24 SING Y N 2
5VE C27 C20 SING Y N 3
5VE N03 C04 SING N N 4
5VE N03 C02 SING N N 5
5VE CL25 C24 SING N N 6
5VE N28 C02 DOUB N N 7
5VE C24 C22 DOUB Y N 8
5VE C04 C05 SING N N 9
5VE C02 N01 SING N N 10
5VE C06 C05 SING N N 11
5VE C06 C07 SING N N 12
5VE C05 C13 SING N N 13
5VE C20 N19 SING N N 14
5VE C20 C21 DOUB Y N 15
5VE N19 C17 SING N N 16
5VE C17 O18 DOUB N N 17
5VE C17 C15 SING N N 18
5VE O16 C15 DOUB N N 19
5VE C22 C21 SING Y N 20
5VE C22 F23 SING N N 21
5VE C15 N14 SING N N 22
5VE N14 C13 SING N N 23
5VE C13 C12 SING N N 24
5VE C07 C08 DOUB Y N 25
5VE C07 C12 SING Y N 26
5VE C08 C09 SING Y N 27
5VE C12 C11 DOUB Y N 28
5VE C09 C10 DOUB Y N 29
5VE C11 C10 SING Y N 30
5VE C10 C00 SING N N 31
5VE C00 N SING N N 32
5VE N C SING N N 33
5VE C13 H1 SING N N 34
5VE C21 H2 SING N N 35
5VE C26 H3 SING N N 36
5VE N H4 SING N N 37
5VE C H6 SING N N 38
5VE C H7 SING N N 39
5VE C H8 SING N N 40
5VE C00 H9 SING N N 41
5VE C00 H10 SING N N 42
5VE N01 H11 SING N N 43
5VE N01 H12 SING N N 44
5VE N03 H13 SING N N 45
5VE C04 H14 SING N N 46
5VE C04 H15 SING N N 47
5VE C05 H16 SING N N 48
5VE C06 H17 SING N N 49
5VE C06 H18 SING N N 50
5VE C08 H19 SING N N 51
5VE C09 H20 SING N N 52
5VE C11 H21 SING N N 53
5VE N14 H22 SING N N 54
5VE N19 H23 SING N N 55
5VE C27 H24 SING N N 56
5VE N28 H25 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5VE InChI InChI 1.03 "InChI=1S/C21H24ClFN6O2/c1-26-9-11-2-3-12-7-13(10-27-21(24)25)18(15(12)6-11)29-20(31)19(30)28-14-4-5-16(22)17(23)8-14/h2-6,8,13,18,26H,7,9-10H2,1H3,(H,28,30)(H,29,31)(H4,24,25,27)/t13-,18-/m1/s1"
5VE InChIKey InChI 1.03 XFJPCFZRCFHOOP-FZKQIMNGSA-N
5VE SMILES_CANONICAL CACTVS 3.385 "CNCc1ccc2C[C@H](CNC(N)=N)[C@@H](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)c2c1"
5VE SMILES CACTVS 3.385 "CNCc1ccc2C[CH](CNC(N)=N)[CH](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)c2c1"
5VE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "[H]/N=C(/N)\NC[C@H]1Cc2ccc(cc2[C@@H]1NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CNC"
5VE SMILES "OpenEye OEToolkits" 2.0.4 "CNCc1ccc2c(c1)C(C(C2)CNC(=N)N)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5VE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-6-(methylaminomethyl)-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5VE "Create component" 2015-12-09 RCSB
5VE "Initial release" 2016-03-30 RCSB
#