data_5VH
#
_chem_comp.id 5VH
_chem_comp.name "~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-6-[[carbamimidoyl(methyl)amino]methyl]-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H26 Cl F N8 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-12-09
_chem_comp.pdbx_modified_date 2016-03-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 488.946
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 5VH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5F4U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5VH CAA C1 C 0 1 Y N N -12.003 -54.179 17.930 4.548 1.536 0.077 CAA 5VH 1
5VH CAB C2 C 0 1 Y N N -11.642 -52.846 17.770 5.862 1.518 0.507 CAB 5VH 2
5VH FAC F1 F 0 1 N N N -11.938 -51.939 18.740 6.305 2.465 1.363 FAC 5VH 3
5VH CAD C3 C 0 1 Y N N -10.977 -52.440 16.618 6.725 0.529 0.061 CAD 5VH 4
5VH CLAE CL1 CL 0 0 N N N -10.529 -50.785 16.420 8.374 0.509 0.602 CLAE 5VH 5
5VH CAF C4 C 0 1 Y N N -10.674 -53.365 15.627 6.273 -0.442 -0.815 CAF 5VH 6
5VH CAG C5 C 0 1 Y N N -11.035 -54.698 15.787 4.961 -0.429 -1.247 CAG 5VH 7
5VH CAH C6 C 0 1 Y N N -11.699 -55.104 16.939 4.092 0.558 -0.798 CAH 5VH 8
5VH NAI N1 N 0 1 N N N -12.047 -56.391 17.093 2.765 0.573 -1.235 NAI 5VH 9
5VH CAJ C7 C 0 1 N N N -13.315 -56.682 17.528 1.785 0.968 -0.398 CAJ 5VH 10
5VH OAK O1 O 0 1 N N N -14.143 -55.809 17.810 2.062 1.391 0.705 OAK 5VH 11
5VH CAL C8 C 0 1 N N N -13.822 -58.153 17.703 0.357 0.886 -0.829 CAL 5VH 12
5VH OAM O2 O 0 1 N N N -13.018 -59.037 17.412 0.079 0.463 -1.932 OAM 5VH 13
5VH NAN N2 N 0 1 N N N -15.059 -58.507 18.141 -0.623 1.282 0.007 NAN 5VH 14
5VH CAO C9 C 0 1 N N R -15.637 -59.845 18.331 -2.024 1.201 -0.415 CAO 5VH 15
5VH CAP C10 C 0 1 Y N N -16.718 -59.779 19.214 -2.583 -0.174 -0.120 CAP 5VH 16
5VH CAQ C11 C 0 1 Y N N -16.710 -59.729 20.546 -2.425 -1.371 -0.797 CAQ 5VH 17
5VH CAR C12 C 0 1 Y N N -17.897 -59.665 21.260 -3.042 -2.518 -0.334 CAR 5VH 18
5VH CAS C13 C 0 1 N N N -17.888 -59.613 22.650 -2.867 -3.819 -1.074 CAS 5VH 19
5VH NAT N3 N 0 1 N N N -17.872 -60.979 23.192 -1.699 -4.528 -0.546 NAT 5VH 20
5VH CAU C14 C 0 1 N N N -17.949 -62.134 22.283 -0.376 -4.300 -1.133 CAU 5VH 21
5VH CBF C15 C 0 1 N N N -17.788 -61.218 24.516 -1.844 -5.408 0.500 CBF 5VH 22
5VH NBH N4 N 0 1 N N N -17.775 -62.470 25.007 -0.805 -6.039 0.970 NBH 5VH 23
5VH NBG N5 N 0 1 N N N -17.717 -60.189 25.375 -3.085 -5.623 1.051 NBG 5VH 24
5VH CAV C16 C 0 1 Y N N -19.091 -59.657 20.562 -3.818 -2.471 0.808 CAV 5VH 25
5VH CAW C17 C 0 1 Y N N -19.046 -59.712 19.177 -3.976 -1.277 1.486 CAW 5VH 26
5VH CAX C18 C 0 1 Y N N -17.881 -59.770 18.533 -3.360 -0.127 1.023 CAX 5VH 27
5VH CAY C19 C 0 1 N N N -17.639 -59.830 17.159 -3.375 1.283 1.574 CAY 5VH 28
5VH CAZ C20 C 0 1 N N R -16.231 -60.335 17.040 -2.889 2.176 0.412 CAZ 5VH 29
5VH CBA C21 C 0 1 N N N -16.032 -61.378 16.750 -4.072 2.686 -0.414 CBA 5VH 30
5VH NBB N6 N 0 1 N N N -14.521 -61.529 16.147 -4.880 3.596 0.402 NBB 5VH 31
5VH CBC C22 C 0 1 N N N -13.374 -62.424 16.153 -6.004 4.183 -0.131 CBC 5VH 32
5VH NBE N7 N 0 1 N N N -13.213 -62.794 17.239 -6.762 5.037 0.635 NBE 5VH 33
5VH NBD N8 N 0 1 N N N -11.929 -62.628 15.777 -6.350 3.929 -1.361 NBD 5VH 34
5VH H1 H1 H 0 1 N N N -12.519 -54.495 18.824 3.875 2.306 0.424 H1 5VH 35
5VH H2 H2 H 0 1 N N N -10.158 -53.049 14.732 6.948 -1.209 -1.165 H2 5VH 36
5VH H3 H3 H 0 1 N N N -10.800 -55.418 15.017 4.610 -1.187 -1.931 H3 5VH 37
5VH H4 H4 H 0 1 N N N -11.395 -57.123 16.895 2.549 0.298 -2.140 H4 5VH 38
5VH H5 H5 H 0 1 N N N -15.665 -57.745 18.367 -0.401 1.620 0.889 H5 5VH 39
5VH H6 H6 H 0 1 N N N -14.869 -60.549 18.683 -2.111 1.424 -1.478 H6 5VH 40
5VH H7 H7 H 0 1 N N N -15.768 -59.738 21.075 -1.819 -1.409 -1.689 H7 5VH 41
5VH H8 H8 H 0 1 N N N -16.992 -59.073 22.991 -3.757 -4.435 -0.941 H8 5VH 42
5VH H9 H9 H 0 1 N N N -18.789 -59.089 23.003 -2.720 -3.617 -2.135 H9 5VH 43
5VH H10 H10 H 0 1 N N N -17.924 -63.065 22.869 0.115 -3.478 -0.612 H10 5VH 44
5VH H11 H11 H 0 1 N N N -18.886 -62.087 21.709 0.226 -5.203 -1.035 H11 5VH 45
5VH H12 H12 H 0 1 N N N -17.094 -62.113 21.591 -0.485 -4.048 -2.188 H12 5VH 46
5VH H13 H13 H 0 1 N N N -17.711 -62.480 26.005 -0.907 -6.660 1.708 H13 5VH 47
5VH H14 H14 H 0 1 N N N -17.656 -60.362 26.358 -3.859 -5.153 0.701 H14 5VH 48
5VH H15 H15 H 0 1 N N N -17.725 -59.250 25.032 -3.188 -6.244 1.789 H15 5VH 49
5VH H16 H16 H 0 1 N N N -20.036 -59.609 21.083 -4.301 -3.366 1.171 H16 5VH 50
5VH H17 H17 H 0 1 N N N -19.967 -59.708 18.613 -4.583 -1.241 2.378 H17 5VH 51
5VH H18 H18 H 0 1 N N N -17.733 -58.832 16.705 -4.386 1.563 1.868 H18 5VH 52
5VH H19 H19 H 0 1 N N N -18.341 -60.522 16.672 -2.698 1.365 2.424 H19 5VH 53
5VH H20 H20 H 0 1 N N N -15.784 -59.672 16.285 -2.289 3.005 0.785 H20 5VH 54
5VH H21 H21 H 0 1 N N N -16.759 -61.685 15.984 -3.702 3.216 -1.291 H21 5VH 55
5VH H22 H22 H 0 1 N N N -16.135 -62.025 17.634 -4.685 1.842 -0.731 H22 5VH 56
5VH H23 H23 H 0 1 N N N -14.313 -60.733 15.579 -4.622 3.785 1.318 H23 5VH 57
5VH H24 H24 H 0 1 N N N -13.822 -62.483 17.969 -6.504 5.226 1.551 H24 5VH 58
5VH H25 H25 H 0 1 N N N -12.465 -63.424 17.447 -7.554 5.451 0.259 H25 5VH 59
5VH H26 H26 H 0 1 N N N -11.390 -62.983 16.541 -7.143 4.343 -1.737 H26 5VH 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5VH CAF CAG DOUB Y N 1
5VH CAF CAD SING Y N 2
5VH NBD CBC DOUB N N 3
5VH CAG CAH SING Y N 4
5VH NBB CBC SING N N 5
5VH NBB CBA SING N N 6
5VH CBC NBE SING N N 7
5VH CLAE CAD SING N N 8
5VH CAD CAB DOUB Y N 9
5VH CBA CAZ SING N N 10
5VH CAH NAI SING N N 11
5VH CAH CAA DOUB Y N 12
5VH CAZ CAY SING N N 13
5VH CAZ CAO SING N N 14
5VH NAI CAJ SING N N 15
5VH CAY CAX SING N N 16
5VH OAM CAL DOUB N N 17
5VH CAJ CAL SING N N 18
5VH CAJ OAK DOUB N N 19
5VH CAL NAN SING N N 20
5VH CAB CAA SING Y N 21
5VH CAB FAC SING N N 22
5VH NAN CAO SING N N 23
5VH CAO CAP SING N N 24
5VH CAX CAW DOUB Y N 25
5VH CAX CAP SING Y N 26
5VH CAW CAV SING Y N 27
5VH CAP CAQ DOUB Y N 28
5VH CAQ CAR SING Y N 29
5VH CAV CAR DOUB Y N 30
5VH CAR CAS SING N N 31
5VH CAU NAT SING N N 32
5VH CAS NAT SING N N 33
5VH NAT CBF SING N N 34
5VH CBF NBH DOUB N N 35
5VH CBF NBG SING N N 36
5VH CAA H1 SING N N 37
5VH CAF H2 SING N N 38
5VH CAG H3 SING N N 39
5VH NAI H4 SING N N 40
5VH NAN H5 SING N N 41
5VH CAO H6 SING N N 42
5VH CAQ H7 SING N N 43
5VH CAS H8 SING N N 44
5VH CAS H9 SING N N 45
5VH CAU H10 SING N N 46
5VH CAU H11 SING N N 47
5VH CAU H12 SING N N 48
5VH NBH H13 SING N N 49
5VH NBG H14 SING N N 50
5VH NBG H15 SING N N 51
5VH CAV H16 SING N N 52
5VH CAW H17 SING N N 53
5VH CAY H18 SING N N 54
5VH CAY H19 SING N N 55
5VH CAZ H20 SING N N 56
5VH CBA H21 SING N N 57
5VH CBA H22 SING N N 58
5VH NBB H23 SING N N 59
5VH NBE H24 SING N N 60
5VH NBE H25 SING N N 61
5VH NBD H26 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5VH InChI InChI 1.03
"InChI=1S/C22H26ClFN8O2/c1-32(22(27)28)10-11-2-3-12-7-13(9-29-21(25)26)18(15(12)6-11)31-20(34)19(33)30-14-4-5-16(23)17(24)8-14/h2-6,8,13,18H,7,9-10H2,1H3,(H3,27,28)(H,30,33)(H,31,34)(H4,25,26,29)/t13-,18-/m1/s1"
5VH InChIKey InChI 1.03 SEZMROBQXWBHMW-FZKQIMNGSA-N
5VH SMILES_CANONICAL CACTVS 3.385 "CN(Cc1ccc2C[C@H](CNC(N)=N)[C@@H](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)c2c1)C(N)=N"
5VH SMILES CACTVS 3.385 "CN(Cc1ccc2C[CH](CNC(N)=N)[CH](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)c2c1)C(N)=N"
5VH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "[H]/N=C(/N)\N(C)Cc1ccc2c(c1)[C@@H]([C@H](C2)CNC(=N)N)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl"
5VH SMILES "OpenEye OEToolkits" 2.0.4 "CN(Cc1ccc2c(c1)C(C(C2)CNC(=N)N)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)C(=N)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5VH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-6-[[carbamimidoyl(methyl)amino]methyl]-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5VH "Create component" 2015-12-09 RCSB
5VH "Initial release" 2016-03-30 RCSB
#