data_5VI # _chem_comp.id 5VI _chem_comp.name "(2S)-2-azanyl-3-[[(2S)-3-butanoyloxy-2-dec-9-enoyloxy-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H36 N O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-24 _chem_comp.pdbx_modified_date 2021-09-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 481.474 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5VI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7V6Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5VI C13 C1 C 0 1 N N N 104.421 117.361 133.062 -3.994 3.886 -2.855 C13 5VI 1 5VI C14 C2 C 0 1 N N N 105.568 116.407 132.752 -3.073 4.046 -1.644 C14 5VI 2 5VI C15 C3 C 0 1 N N N 106.204 116.720 131.403 -2.628 2.666 -1.156 C15 5VI 3 5VI C16 C4 C 0 1 N N N 107.213 115.661 130.967 -1.721 2.824 0.038 C16 5VI 4 5VI O17 O1 O 0 1 N N N 108.332 115.693 131.353 -1.458 3.927 0.455 O17 5VI 5 5VI O18 O2 O 0 1 N N N 106.792 114.647 130.107 -1.205 1.739 0.637 O18 5VI 6 5VI C19 C5 C 0 1 N N N 106.972 114.938 128.756 -0.340 1.966 1.781 C19 5VI 7 5VI C20 C6 C 0 1 N N S 105.826 114.302 127.983 0.148 0.623 2.326 C20 5VI 8 5VI C21 C7 C 0 1 N N N 105.366 115.121 126.789 -1.056 -0.268 2.639 C21 5VI 9 5VI O22 O3 O 0 1 N N N 103.971 115.164 126.764 -1.875 -0.389 1.474 O22 5VI 10 5VI P23 P1 P 0 1 N N N 103.148 116.184 127.752 -3.231 -1.257 1.442 P23 5VI 11 5VI O24 O4 O 0 1 N N N 102.303 115.362 128.679 -2.878 -2.813 1.657 O24 5VI 12 5VI O25 O5 O 0 1 N N N 104.094 117.035 128.554 -4.134 -0.802 2.523 O25 5VI 13 5VI O26 O6 O 0 1 N N N 102.171 117.172 126.877 -3.958 -1.064 0.018 O26 5VI 14 5VI C27 C8 C 0 1 N N N 100.977 117.593 127.464 -5.238 -1.622 -0.284 C27 5VI 15 5VI C28 C9 C 0 1 N N S 100.855 119.092 127.239 -5.632 -1.248 -1.714 C28 5VI 16 5VI C29 C10 C 0 1 N N N 102.208 119.713 126.919 -6.923 -1.937 -2.076 C29 5VI 17 5VI O30 O7 O 0 1 N N N 103.088 119.796 127.810 -6.914 -3.226 -2.450 O30 5VI 18 5VI O31 O8 O 0 1 N N N 102.449 120.140 125.763 -7.966 -1.329 -2.028 O31 5VI 19 5VI N32 N1 N 0 1 N N N 99.910 119.365 126.177 -5.810 0.207 -1.809 N32 5VI 20 5VI O33 O9 O 0 1 N N N 106.247 113.057 127.538 0.985 -0.027 1.334 O33 5VI 21 5VI C34 C11 C 0 1 N N N 105.647 112.070 128.310 2.300 0.237 1.379 C34 5VI 22 5VI O35 O10 O 0 1 N N N 104.627 112.313 128.856 2.737 0.987 2.220 O35 5VI 23 5VI C36 C12 C 0 1 N N N 106.293 110.711 128.513 3.232 -0.401 0.381 C36 5VI 24 5VI C37 C13 C 0 1 N N N 106.109 110.310 129.967 4.665 0.064 0.651 C37 5VI 25 5VI C38 C14 C 0 1 N N N 106.888 111.223 130.906 5.611 -0.584 -0.362 C38 5VI 26 5VI C39 C15 C 0 1 N N N 106.009 111.780 132.012 7.043 -0.119 -0.092 C39 5VI 27 5VI C40 C16 C 0 1 N N N 106.702 111.684 133.357 7.989 -0.766 -1.105 C40 5VI 28 5VI C41 C17 C 0 1 N N N 105.814 112.234 134.454 9.421 -0.302 -0.835 C41 5VI 29 5VI C42 C18 C 0 1 N N N 106.471 112.022 135.800 10.367 -0.949 -1.848 C42 5VI 30 5VI C43 C19 C 0 1 N N N 106.415 113.287 136.631 11.778 -0.491 -1.582 C43 5VI 31 5VI C44 C20 C 0 1 N N N 107.390 113.519 137.473 12.727 -1.373 -1.388 C44 5VI 32 5VI H1 H1 H 0 1 N N N 103.986 117.107 134.040 -4.869 3.301 -2.572 H1 5VI 33 5VI H2 H2 H 0 1 N N N 104.799 118.394 133.086 -4.311 4.869 -3.203 H2 5VI 34 5VI H3 H3 H 0 1 N N N 103.649 117.271 132.283 -3.457 3.374 -3.654 H3 5VI 35 5VI H4 H4 H 0 1 N N N 105.182 115.377 132.735 -2.198 4.631 -1.927 H4 5VI 36 5VI H5 H5 H 0 1 N N N 106.332 116.499 133.538 -3.610 4.558 -0.845 H5 5VI 37 5VI H6 H6 H 0 1 N N N 106.719 117.689 131.473 -3.503 2.081 -0.872 H6 5VI 38 5VI H7 H7 H 0 1 N N N 105.409 116.782 130.645 -2.091 2.154 -1.954 H7 5VI 39 5VI H8 H8 H 0 1 N N N 107.931 114.525 128.409 0.516 2.567 1.474 H8 5VI 40 5VI H9 H9 H 0 1 N N N 106.966 116.027 128.604 -0.895 2.494 2.557 H9 5VI 41 5VI H10 H10 H 0 1 N N N 104.973 114.187 128.668 0.724 0.788 3.236 H10 5VI 42 5VI H11 H11 H 0 1 N N N 105.735 114.658 125.862 -0.709 -1.255 2.943 H11 5VI 43 5VI H12 H12 H 0 1 N N N 105.763 116.144 126.871 -1.637 0.177 3.447 H12 5VI 44 5VI H13 H13 H 0 1 N N N 102.543 115.551 129.579 -2.288 -3.179 0.984 H13 5VI 45 5VI H14 H14 H 0 1 N N N 100.127 117.074 126.998 -5.193 -2.707 -0.191 H14 5VI 46 5VI H15 H15 H 0 1 N N N 100.993 117.376 128.542 -5.979 -1.228 0.412 H15 5VI 47 5VI H16 H16 H 0 1 N N N 100.486 119.546 128.170 -4.847 -1.564 -2.402 H16 5VI 48 5VI H17 H17 H 0 1 N N N 103.868 120.202 127.449 -7.766 -3.625 -2.673 H17 5VI 49 5VI H18 H18 H 0 1 N N N 99.027 118.952 126.401 -6.533 0.524 -1.181 H18 5VI 50 5VI H19 H19 H 0 1 N N N 99.799 120.354 126.076 -4.942 0.689 -1.635 H19 5VI 51 5VI H21 H21 H 0 1 N N N 105.813 109.969 127.858 3.178 -1.485 0.476 H21 5VI 52 5VI H22 H22 H 0 1 N N N 107.366 110.769 128.276 2.940 -0.109 -0.627 H22 5VI 53 5VI H23 H23 H 0 1 N N N 105.040 110.367 130.220 4.719 1.149 0.557 H23 5VI 54 5VI H24 H24 H 0 1 N N N 106.463 109.277 130.099 4.957 -0.228 1.660 H24 5VI 55 5VI H25 H25 H 0 1 N N N 107.710 110.649 131.360 5.557 -1.668 -0.267 H25 5VI 56 5VI H26 H26 H 0 1 N N N 107.302 112.060 130.325 5.318 -0.292 -1.370 H26 5VI 57 5VI H27 H27 H 0 1 N N N 105.786 112.835 131.797 7.097 0.966 -0.186 H27 5VI 58 5VI H28 H28 H 0 1 N N N 105.071 111.207 132.049 7.336 -0.410 0.917 H28 5VI 59 5VI H29 H29 H 0 1 N N N 106.931 110.630 133.571 7.935 -1.851 -1.010 H29 5VI 60 5VI H30 H30 H 0 1 N N N 107.637 112.263 133.324 7.696 -0.475 -2.114 H30 5VI 61 5VI H31 H31 H 0 1 N N N 105.656 113.310 134.290 9.475 0.783 -0.929 H31 5VI 62 5VI H32 H32 H 0 1 N N N 104.845 111.714 134.435 9.714 -0.593 0.174 H32 5VI 63 5VI H33 H33 H 0 1 N N N 105.947 111.216 136.334 10.314 -2.034 -1.754 H33 5VI 64 5VI H34 H34 H 0 1 N N N 107.522 111.737 135.647 10.075 -0.658 -2.857 H34 5VI 65 5VI H35 H35 H 0 1 N N N 105.592 113.979 136.531 12.007 0.564 -1.551 H35 5VI 66 5VI H36 H36 H 0 1 N N N 107.379 114.412 138.080 13.739 -1.045 -1.198 H36 5VI 67 5VI H37 H37 H 0 1 N N N 108.206 112.817 137.561 12.499 -2.428 -1.419 H37 5VI 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5VI O31 C29 DOUB N N 1 5VI N32 C28 SING N N 2 5VI O22 C21 SING N N 3 5VI O22 P23 SING N N 4 5VI C21 C20 SING N N 5 5VI O26 C27 SING N N 6 5VI O26 P23 SING N N 7 5VI C29 C28 SING N N 8 5VI C29 O30 SING N N 9 5VI C28 C27 SING N N 10 5VI O33 C20 SING N N 11 5VI O33 C34 SING N N 12 5VI P23 O25 DOUB N N 13 5VI P23 O24 SING N N 14 5VI C20 C19 SING N N 15 5VI C34 C36 SING N N 16 5VI C34 O35 DOUB N N 17 5VI C36 C37 SING N N 18 5VI C19 O18 SING N N 19 5VI C37 C38 SING N N 20 5VI O18 C16 SING N N 21 5VI C38 C39 SING N N 22 5VI C16 O17 DOUB N N 23 5VI C16 C15 SING N N 24 5VI C15 C14 SING N N 25 5VI C39 C40 SING N N 26 5VI C14 C13 SING N N 27 5VI C40 C41 SING N N 28 5VI C41 C42 SING N N 29 5VI C42 C43 SING N N 30 5VI C43 C44 DOUB N N 31 5VI C13 H1 SING N N 32 5VI C13 H2 SING N N 33 5VI C13 H3 SING N N 34 5VI C14 H4 SING N N 35 5VI C14 H5 SING N N 36 5VI C15 H6 SING N N 37 5VI C15 H7 SING N N 38 5VI C19 H8 SING N N 39 5VI C19 H9 SING N N 40 5VI C20 H10 SING N N 41 5VI C21 H11 SING N N 42 5VI C21 H12 SING N N 43 5VI O24 H13 SING N N 44 5VI C27 H14 SING N N 45 5VI C27 H15 SING N N 46 5VI C28 H16 SING N N 47 5VI O30 H17 SING N N 48 5VI N32 H18 SING N N 49 5VI N32 H19 SING N N 50 5VI C36 H21 SING N N 51 5VI C36 H22 SING N N 52 5VI C37 H23 SING N N 53 5VI C37 H24 SING N N 54 5VI C38 H25 SING N N 55 5VI C38 H26 SING N N 56 5VI C39 H27 SING N N 57 5VI C39 H28 SING N N 58 5VI C40 H29 SING N N 59 5VI C40 H30 SING N N 60 5VI C41 H31 SING N N 61 5VI C41 H32 SING N N 62 5VI C42 H33 SING N N 63 5VI C42 H34 SING N N 64 5VI C43 H35 SING N N 65 5VI C44 H36 SING N N 66 5VI C44 H37 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5VI InChI InChI 1.03 "InChI=1S/C20H36NO10P/c1-3-5-6-7-8-9-10-12-19(23)31-16(13-28-18(22)11-4-2)14-29-32(26,27)30-15-17(21)20(24)25/h3,16-17H,1,4-15,21H2,2H3,(H,24,25)(H,26,27)/t16-,17-/m0/s1" 5VI InChIKey InChI 1.03 QOQOJXXMIFYVDE-IRXDYDNUSA-N 5VI SMILES_CANONICAL CACTVS 3.385 "CCCC(=O)OC[C@@H](CO[P](O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCCC=C" 5VI SMILES CACTVS 3.385 "CCCC(=O)OC[CH](CO[P](O)(=O)OC[CH](N)C(O)=O)OC(=O)CCCCCCCC=C" 5VI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC(=O)OC[C@@H](COP(=O)(O)OC[C@@H](C(=O)O)N)OC(=O)CCCCCCCC=C" 5VI SMILES "OpenEye OEToolkits" 2.0.7 "CCCC(=O)OCC(COP(=O)(O)OCC(C(=O)O)N)OC(=O)CCCCCCCC=C" # _pdbx_chem_comp_identifier.comp_id 5VI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-[[(2~{S})-3-butanoyloxy-2-dec-9-enoyloxy-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5VI "Create component" 2021-08-24 PDBJ 5VI "Initial release" 2021-09-22 RCSB ##