data_5VP # _chem_comp.id 5VP _chem_comp.name "4-{[(2-chloro-5-phenylthieno[2,3-d]pyrimidin-4-yl)amino]methyl}phenol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H14 Cl N3 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-23 _chem_comp.pdbx_modified_date 2022-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.852 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5VP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RKE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5VP N1 N1 N 0 1 Y N N 3.350 6.377 -5.068 1.871 1.812 0.058 N1 5VP 1 5VP N3 N2 N 0 1 N N N 3.790 4.126 -5.714 -0.179 0.661 0.043 N3 5VP 2 5VP C4 C1 C 0 1 Y N N 1.542 4.856 -5.124 1.930 -0.549 -0.012 C4 5VP 3 5VP C5 C2 C 0 1 Y N N -0.415 3.933 -5.012 2.426 -2.840 -0.083 C5 5VP 4 5VP C6 C3 C 0 1 Y N N 0.719 3.814 -5.235 1.457 -1.927 -0.048 C6 5VP 5 5VP C7 C4 C 0 1 Y N N 1.211 2.446 -5.740 0.018 -2.283 -0.044 C7 5VP 6 5VP C8 C5 C 0 1 Y N N 1.620 2.419 -7.011 -0.824 -1.805 -1.047 C8 5VP 7 5VP C10 C6 C 0 1 Y N N 2.114 0.001 -6.948 -2.669 -2.948 -0.036 C10 5VP 8 5VP C13 C7 C 0 1 N N N 5.219 4.405 -5.517 -0.919 1.922 -0.043 C13 5VP 9 5VP C15 C8 C 0 1 Y N N 7.233 3.540 -6.726 -3.066 1.598 1.201 C15 5VP 10 5VP C17 C9 C 0 1 Y N N 7.212 2.827 -9.077 -5.116 1.123 0.052 C17 5VP 11 5VP C1 C10 C 0 1 Y N N 2.835 5.149 -5.292 1.204 0.668 0.031 C1 5VP 12 5VP C11 C11 C 0 1 Y N N 1.621 0.035 -5.494 -1.837 -3.431 0.958 C11 5VP 13 5VP C12 C12 C 0 1 Y N N 1.179 1.150 -4.929 -0.497 -3.102 0.960 C12 5VP 14 5VP C14 C13 C 0 1 Y N N 5.944 3.848 -6.758 -2.399 1.640 -0.009 C14 5VP 15 5VP C16 C14 C 0 1 Y N N 7.924 2.992 -7.974 -4.423 1.340 1.234 C16 5VP 16 5VP C18 C15 C 0 1 Y N N 5.727 3.183 -9.112 -4.444 1.165 -1.161 C18 5VP 17 5VP C19 C16 C 0 1 Y N N 5.128 3.657 -8.035 -3.087 1.424 -1.189 C19 5VP 18 5VP C2 C17 C 0 1 Y N N 2.411 7.353 -4.645 3.193 1.834 0.046 C2 5VP 19 5VP C3 C18 C 0 1 Y N N 0.580 5.945 -4.664 3.322 -0.472 -0.023 C3 5VP 20 5VP C9 C19 C 0 1 Y N N 2.120 1.120 -7.662 -2.162 -2.140 -1.038 C9 5VP 21 5VP N2 N3 N 0 1 Y N N 1.054 7.125 -4.452 3.908 0.733 0.007 N2 5VP 22 5VP O1 O1 O 0 1 N N N 7.832 2.319 -10.222 -6.450 0.868 0.082 O1 5VP 23 5VP S1 S1 S 0 1 Y N N -0.935 5.380 -4.525 4.010 -2.089 -0.078 S1 5VP 24 5VP CL1 CL1 CL 0 0 N N N 3.021 8.985 -4.350 4.009 3.365 0.083 CL1 5VP 25 5VP H1 H1 H 0 1 N N N 3.648 3.969 -6.691 -0.659 -0.179 0.108 H1 5VP 26 5VP H2 H2 H 0 1 N N N -1.097 3.104 -5.127 2.258 -3.907 -0.113 H2 5VP 27 5VP H4 H4 H 0 1 N N N 1.599 3.328 -7.593 -0.429 -1.173 -1.829 H4 5VP 28 5VP H5 H5 H 0 1 N N N 2.453 -0.926 -7.386 -3.718 -3.208 -0.034 H5 5VP 29 5VP H6 H6 H 0 1 N N N 5.387 5.489 -5.432 -0.651 2.559 0.801 H6 5VP 30 5VP H7 H7 H 0 1 N N N 5.583 3.905 -4.607 -0.666 2.429 -0.974 H7 5VP 31 5VP H8 H8 H 0 1 N N N 7.797 3.677 -5.815 -2.526 1.763 2.121 H8 5VP 32 5VP H9 H9 H 0 1 N N N 1.635 -0.876 -4.915 -2.239 -4.062 1.738 H9 5VP 33 5VP H10 H10 H 0 1 N N N 0.804 1.143 -3.916 0.151 -3.480 1.737 H10 5VP 34 5VP H11 H11 H 0 1 N N N 8.975 2.744 -7.956 -4.944 1.307 2.180 H11 5VP 35 5VP H12 H12 H 0 1 N N N 5.164 3.046 -10.023 -4.981 0.997 -2.083 H12 5VP 36 5VP H13 H13 H 0 1 N N N 4.077 3.906 -8.057 -2.563 1.458 -2.133 H13 5VP 37 5VP H14 H14 H 0 1 N N N 2.470 1.117 -8.684 -2.816 -1.770 -1.814 H14 5VP 38 5VP H15 H15 H 0 1 N N N 7.197 2.258 -10.926 -7.003 1.660 0.029 H15 5VP 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5VP N1 C1 DOUB Y N 1 5VP N1 C2 SING Y N 2 5VP N3 C13 SING N N 3 5VP N3 C1 SING N N 4 5VP C4 C6 SING Y N 5 5VP C4 C1 SING Y N 6 5VP C4 C3 DOUB Y N 7 5VP C5 C6 DOUB Y N 8 5VP C5 S1 SING Y N 9 5VP C6 C7 SING N N 10 5VP C7 C8 DOUB Y N 11 5VP C7 C12 SING Y N 12 5VP C8 C9 SING Y N 13 5VP C10 C11 SING Y N 14 5VP C10 C9 DOUB Y N 15 5VP C13 C14 SING N N 16 5VP C15 C14 DOUB Y N 17 5VP C15 C16 SING Y N 18 5VP C17 C16 DOUB Y N 19 5VP C17 C18 SING Y N 20 5VP C17 O1 SING N N 21 5VP C11 C12 DOUB Y N 22 5VP C14 C19 SING Y N 23 5VP C18 C19 DOUB Y N 24 5VP C2 N2 DOUB Y N 25 5VP C2 CL1 SING N N 26 5VP C3 N2 SING Y N 27 5VP C3 S1 SING Y N 28 5VP N3 H1 SING N N 29 5VP C5 H2 SING N N 30 5VP C8 H4 SING N N 31 5VP C10 H5 SING N N 32 5VP C13 H6 SING N N 33 5VP C13 H7 SING N N 34 5VP C15 H8 SING N N 35 5VP C11 H9 SING N N 36 5VP C12 H10 SING N N 37 5VP C16 H11 SING N N 38 5VP C18 H12 SING N N 39 5VP C19 H13 SING N N 40 5VP C9 H14 SING N N 41 5VP O1 H15 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5VP SMILES ACDLabs 12.01 "Oc1ccc(cc1)CNc1nc(Cl)nc2scc(c12)c1ccccc1" 5VP InChI InChI 1.03 "InChI=1S/C19H14ClN3OS/c20-19-22-17(21-10-12-6-8-14(24)9-7-12)16-15(11-25-18(16)23-19)13-4-2-1-3-5-13/h1-9,11,24H,10H2,(H,21,22,23)" 5VP InChIKey InChI 1.03 NNBAZKOESMUGEL-UHFFFAOYSA-N 5VP SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(CNc2nc(Cl)nc3scc(c4ccccc4)c23)cc1" 5VP SMILES CACTVS 3.385 "Oc1ccc(CNc2nc(Cl)nc3scc(c4ccccc4)c23)cc1" 5VP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2csc3c2c(nc(n3)Cl)NCc4ccc(cc4)O" 5VP SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2csc3c2c(nc(n3)Cl)NCc4ccc(cc4)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5VP "SYSTEMATIC NAME" ACDLabs 12.01 "4-{[(2-chloro-5-phenylthieno[2,3-d]pyrimidin-4-yl)amino]methyl}phenol" 5VP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[(2-chloranyl-5-phenyl-thieno[2,3-d]pyrimidin-4-yl)amino]methyl]phenol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5VP "Create component" 2021-07-23 RCSB 5VP "Initial release" 2022-06-22 RCSB #