data_5VT # _chem_comp.id 5VT _chem_comp.name "(2~{S})-~{N}2-[2-(4-methoxyphenyl)ethyl]-~{N}1-(naphthalen-1-ylmethyl)pyrrolidine-1,2-dicarboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H29 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-12-12 _chem_comp.pdbx_modified_date 2016-10-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 431.527 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5VT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5FAH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5VT C2 C1 C 0 1 N N N 14.520 14.051 40.629 -3.470 -0.756 -0.168 C2 5VT 1 5VT C3 C2 C 0 1 N N N 15.875 13.103 38.818 -1.160 -1.470 0.135 C3 5VT 2 5VT C13 C3 C 0 1 N N N 15.801 12.630 33.456 3.199 1.278 -0.008 C13 5VT 3 5VT C14 C4 C 0 1 Y N N 15.703 14.055 32.879 4.610 1.529 0.455 C14 5VT 4 5VT C15 C5 C 0 1 Y N N 15.550 16.657 31.791 7.215 2.011 1.348 C15 5VT 5 5VT C16 C6 C 0 1 Y N N 16.069 16.460 33.072 6.139 2.403 2.082 C16 5VT 6 5VT C17 C7 C 0 1 Y N N 16.163 15.156 33.614 4.840 2.163 1.637 C17 5VT 7 5VT C18 C8 C 0 1 Y N N 15.119 15.551 31.025 7.018 1.348 0.124 C18 5VT 8 5VT C19 C9 C 0 1 Y N N 15.186 14.238 31.582 5.697 1.103 -0.328 C19 5VT 9 5VT C20 C10 C 0 1 Y N N 14.703 13.182 30.790 5.500 0.440 -1.551 C20 5VT 10 5VT C21 C11 C 0 1 Y N N 14.147 13.395 29.523 6.576 0.043 -2.283 C21 5VT 11 5VT C22 C12 C 0 1 Y N N 14.095 14.690 29.004 7.874 0.283 -1.838 C22 5VT 12 5VT C23 C13 C 0 1 Y N N 14.542 15.769 29.762 8.104 0.922 -0.659 C23 5VT 13 5VT C24 C14 C 0 1 N N N 15.534 14.693 41.600 -4.744 -1.275 -0.839 C24 5VT 14 5VT C25 C15 C 0 1 Y N N 14.917 15.963 42.195 -5.861 -0.285 -0.629 C25 5VT 15 5VT C26 C16 C 0 1 Y N N 15.137 17.213 41.607 -6.675 -0.389 0.484 C26 5VT 16 5VT C27 C17 C 0 1 Y N N 13.711 18.257 43.296 -7.911 1.531 -0.244 C27 5VT 17 5VT C28 C18 C 0 1 Y N N 13.487 17.005 43.880 -7.090 1.636 -1.357 C28 5VT 18 5VT C29 C19 C 0 1 Y N N 14.536 18.366 42.160 -7.700 0.517 0.678 C29 5VT 19 5VT C30 C20 C 0 1 Y N N 14.091 15.868 43.317 -6.066 0.728 -1.547 C30 5VT 20 5VT N1 N1 N 0 1 N N N 15.130 12.937 39.894 -2.384 -1.718 -0.371 N1 5VT 21 5VT C4 C21 C 0 1 N N S 16.475 11.850 38.227 -0.043 -2.459 -0.074 C4 5VT 22 5VT N5 N2 N 0 1 N N N 16.979 12.073 36.888 1.258 -1.836 0.229 N5 5VT 23 5VT C6 C22 C 0 1 N N N 17.743 11.408 39.003 -0.165 -3.631 0.931 C6 5VT 24 5VT C7 C23 C 0 1 N N N 18.390 11.731 36.729 2.121 -2.836 0.875 C7 5VT 25 5VT C8 C24 C 0 1 N N N 18.644 10.794 37.933 1.300 -4.137 1.000 C8 5VT 26 5VT O9 O1 O 0 1 N N N 16.075 14.228 38.317 -0.958 -0.450 0.760 O9 5VT 27 5VT C10 C25 C 0 1 N N N 16.093 12.282 35.871 1.600 -0.561 -0.042 C10 5VT 28 5VT O11 O2 O 0 1 N N N 14.872 12.233 36.060 0.803 0.181 -0.582 O11 5VT 29 5VT N12 N3 N 0 1 N N N 16.616 12.504 34.650 2.827 -0.108 0.286 N12 5VT 30 5VT O31 O3 O 0 1 N N N 13.100 19.403 43.860 -8.919 2.423 -0.055 O31 5VT 31 5VT C32 C26 C 0 1 N N N 12.388 19.421 45.112 -9.725 2.254 1.113 C32 5VT 32 5VT H1 H1 H 0 1 N N N 14.178 14.811 39.911 -3.193 0.203 -0.606 H1 5VT 33 5VT H2 H2 H 0 1 N N N 13.660 13.675 41.203 -3.648 -0.630 0.900 H2 5VT 34 5VT H3 H3 H 0 1 N N N 14.784 12.291 33.701 2.520 1.955 0.512 H3 5VT 35 5VT H4 H4 H 0 1 N N N 16.229 11.977 32.681 3.132 1.452 -1.082 H4 5VT 36 5VT H5 H5 H 0 1 N N N 15.478 17.655 31.385 8.216 2.204 1.705 H5 5VT 37 5VT H6 H6 H 0 1 N N N 16.401 17.308 33.653 6.293 2.912 3.022 H6 5VT 38 5VT H7 H7 H 0 1 N N N 16.590 15.009 34.595 4.003 2.485 2.239 H7 5VT 39 5VT H8 H8 H 0 1 N N N 14.763 12.173 31.171 4.499 0.247 -1.908 H8 5VT 40 5VT H9 H9 H 0 1 N N N 13.761 12.564 28.951 6.422 -0.467 -3.223 H9 5VT 41 5VT H10 H10 H 0 1 N N N 13.706 14.856 28.010 8.711 -0.043 -2.438 H10 5VT 42 5VT H11 H11 H 0 1 N N N 14.445 16.774 29.379 9.116 1.101 -0.326 H11 5VT 43 5VT H12 H12 H 0 1 N N N 15.771 13.985 42.407 -4.566 -1.401 -1.906 H12 5VT 44 5VT H13 H13 H 0 1 N N N 16.455 14.950 41.056 -5.021 -2.234 -0.400 H13 5VT 45 5VT H14 H14 H 0 1 N N N 15.765 17.297 40.732 -6.510 -1.179 1.202 H14 5VT 46 5VT H15 H15 H 0 1 N N N 12.858 16.914 44.753 -7.250 2.428 -2.074 H15 5VT 47 5VT H16 H16 H 0 1 N N N 14.710 19.333 41.711 -8.335 0.435 1.548 H16 5VT 48 5VT H17 H17 H 0 1 N N N 13.913 14.900 43.761 -5.426 0.810 -2.413 H17 5VT 49 5VT H18 H18 H 0 1 N N N 14.973 12.006 40.225 -2.546 -2.534 -0.871 H18 5VT 50 5VT H19 H19 H 0 1 N N N 15.735 11.036 38.238 -0.057 -2.834 -1.097 H19 5VT 51 5VT H20 H20 H 0 1 N N N 17.489 10.664 39.773 -0.502 -3.277 1.906 H20 5VT 52 5VT H21 H21 H 0 1 N N N 18.232 12.273 39.475 -0.829 -4.406 0.549 H21 5VT 53 5VT H22 H22 H 0 1 N N N 18.568 11.211 35.776 3.005 -3.013 0.263 H22 5VT 54 5VT H23 H23 H 0 1 N N N 19.025 12.628 36.782 2.416 -2.487 1.865 H23 5VT 55 5VT H24 H24 H 0 1 N N N 18.347 9.760 37.705 1.495 -4.626 1.954 H24 5VT 56 5VT H25 H25 H 0 1 N N N 19.700 10.813 38.240 1.515 -4.810 0.170 H25 5VT 57 5VT H26 H26 H 0 1 N N N 17.609 12.586 34.562 3.463 -0.700 0.717 H26 5VT 58 5VT H27 H27 H 0 1 N N N 12.017 20.438 45.309 -10.203 1.275 1.086 H27 5VT 59 5VT H28 H28 H 0 1 N N N 11.538 18.725 45.060 -9.098 2.328 2.001 H28 5VT 60 5VT H29 H29 H 0 1 N N N 13.065 19.114 45.923 -10.490 3.030 1.142 H29 5VT 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5VT C22 C21 DOUB Y N 1 5VT C22 C23 SING Y N 2 5VT C21 C20 SING Y N 3 5VT C23 C18 DOUB Y N 4 5VT C20 C19 DOUB Y N 5 5VT C18 C19 SING Y N 6 5VT C18 C15 SING Y N 7 5VT C19 C14 SING Y N 8 5VT C15 C16 DOUB Y N 9 5VT C14 C13 SING N N 10 5VT C14 C17 DOUB Y N 11 5VT C16 C17 SING Y N 12 5VT C13 N12 SING N N 13 5VT N12 C10 SING N N 14 5VT C10 O11 DOUB N N 15 5VT C10 N5 SING N N 16 5VT C7 N5 SING N N 17 5VT C7 C8 SING N N 18 5VT N5 C4 SING N N 19 5VT C8 C6 SING N N 20 5VT C4 C3 SING N N 21 5VT C4 C6 SING N N 22 5VT O9 C3 DOUB N N 23 5VT C3 N1 SING N N 24 5VT N1 C2 SING N N 25 5VT C2 C24 SING N N 26 5VT C24 C25 SING N N 27 5VT C26 C29 DOUB Y N 28 5VT C26 C25 SING Y N 29 5VT C29 C27 SING Y N 30 5VT C25 C30 DOUB Y N 31 5VT C27 O31 SING N N 32 5VT C27 C28 DOUB Y N 33 5VT C30 C28 SING Y N 34 5VT O31 C32 SING N N 35 5VT C2 H1 SING N N 36 5VT C2 H2 SING N N 37 5VT C13 H3 SING N N 38 5VT C13 H4 SING N N 39 5VT C15 H5 SING N N 40 5VT C16 H6 SING N N 41 5VT C17 H7 SING N N 42 5VT C20 H8 SING N N 43 5VT C21 H9 SING N N 44 5VT C22 H10 SING N N 45 5VT C23 H11 SING N N 46 5VT C24 H12 SING N N 47 5VT C24 H13 SING N N 48 5VT C26 H14 SING N N 49 5VT C28 H15 SING N N 50 5VT C29 H16 SING N N 51 5VT C30 H17 SING N N 52 5VT N1 H18 SING N N 53 5VT C4 H19 SING N N 54 5VT C6 H20 SING N N 55 5VT C6 H21 SING N N 56 5VT C7 H22 SING N N 57 5VT C7 H23 SING N N 58 5VT C8 H24 SING N N 59 5VT C8 H25 SING N N 60 5VT N12 H26 SING N N 61 5VT C32 H27 SING N N 62 5VT C32 H28 SING N N 63 5VT C32 H29 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5VT InChI InChI 1.03 "InChI=1S/C26H29N3O3/c1-32-22-13-11-19(12-14-22)15-16-27-25(30)24-10-5-17-29(24)26(31)28-18-21-8-4-7-20-6-2-3-9-23(20)21/h2-4,6-9,11-14,24H,5,10,15-18H2,1H3,(H,27,30)(H,28,31)/t24-/m0/s1" 5VT InChIKey InChI 1.03 HMNBKWNEJGMBRQ-DEOSSOPVSA-N 5VT SMILES_CANONICAL CACTVS 3.385 "COc1ccc(CCNC(=O)[C@@H]2CCCN2C(=O)NCc3cccc4ccccc34)cc1" 5VT SMILES CACTVS 3.385 "COc1ccc(CCNC(=O)[CH]2CCCN2C(=O)NCc3cccc4ccccc34)cc1" 5VT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "COc1ccc(cc1)CCNC(=O)[C@@H]2CCCN2C(=O)NCc3cccc4c3cccc4" 5VT SMILES "OpenEye OEToolkits" 2.0.4 "COc1ccc(cc1)CCNC(=O)C2CCCN2C(=O)NCc3cccc4c3cccc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5VT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-~{N}2-[2-(4-methoxyphenyl)ethyl]-~{N}1-(naphthalen-1-ylmethyl)pyrrolidine-1,2-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5VT "Create component" 2015-12-12 EBI 5VT "Initial release" 2016-10-26 RCSB #