data_5VV # _chem_comp.id 5VV _chem_comp.name N-carbamoyl-L-Asparagine _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H8 N2 O5" _chem_comp.mon_nstd_parent_comp_id ASN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-12-14 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 176.127 _chem_comp.one_letter_code N _chem_comp.three_letter_code 5VV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5FAX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5VV N N N 0 1 N N N Y Y N -13.169 -15.839 37.745 0.537 -0.615 0.526 N 5VV 1 5VV C9 C9 C 0 1 N N N N N N -12.164 -16.596 38.206 1.525 -1.336 -0.040 C9 5VV 2 5VV O10 O10 O 0 1 N N N N N N -11.750 -16.516 39.403 2.061 -2.379 0.622 O10 5VV 3 5VV O11 O11 O 0 1 N N N N N N -11.598 -17.419 37.432 1.932 -1.045 -1.147 O11 5VV 4 5VV CA CA C 0 1 N N S N Y N -13.759 -14.659 38.472 -0.046 0.520 -0.193 CA 5VV 5 5VV CB CB C 0 1 N N N N N N -14.905 -14.062 37.676 -1.469 0.767 0.311 CB 5VV 6 5VV CG CG C 0 1 N N N N N N -14.637 -13.088 36.518 -2.338 -0.415 -0.037 CG 5VV 7 5VV ND2 ND2 N 0 1 N N N N N N -15.793 -12.656 35.775 -3.640 -0.420 0.311 ND2 5VV 8 5VV OD1 OD1 O 0 1 N N N N N N -13.342 -12.620 36.225 -1.865 -1.361 -0.630 OD1 5VV 9 5VV C C C 0 1 N N N N Y Y -14.332 -15.043 39.846 0.792 1.750 0.045 C 5VV 10 5VV O O O 0 1 N N N N Y Y -14.082 -14.276 40.783 1.775 1.685 0.745 O 5VV 11 5VV H H1 H 0 1 N N N Y Y N -13.556 -16.075 36.853 0.209 -0.850 1.409 H 5VV 12 5VV H10 H2 H 0 1 N N N N N N -11.035 -17.128 39.533 2.767 -2.866 0.175 H10 5VV 13 5VV HA H3 H 0 1 N N N N Y N -12.981 -13.894 38.613 -0.072 0.299 -1.260 HA 5VV 14 5VV H4 H4 H 0 1 N N N N N N -15.541 -13.526 38.396 -1.453 0.900 1.393 H4 5VV 15 5VV H5 H5 H 0 1 N N N N N N -15.465 -14.908 37.251 -1.871 1.664 -0.159 H5 5VV 16 5VV H6 H6 H 0 1 N N N N N N -15.690 -12.003 35.024 -4.018 0.337 0.785 H6 5VV 17 5VV H7 H7 H 0 1 N N N N N N -16.699 -13.009 36.010 -4.199 -1.181 0.086 H7 5VV 18 5VV OXT OXT O 0 1 N Y N N Y Y ? ? ? 0.445 2.917 -0.519 O1 5VV 19 5VV HXT HXT H 0 1 N Y N N Y Y ? ? ? 1.014 3.678 -0.337 H1 5VV 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5VV ND2 CG SING N N 1 5VV OD1 CG DOUB N N 2 5VV CG CB SING N N 3 5VV O11 C9 DOUB N N 4 5VV CB CA SING N N 5 5VV N C9 SING N N 6 5VV N CA SING N N 7 5VV C9 O10 SING N N 8 5VV CA C SING N N 9 5VV C O DOUB N N 10 5VV N H SING N N 11 5VV O10 H10 SING N N 12 5VV CA HA SING N N 13 5VV CB H4 SING N N 14 5VV CB H5 SING N N 15 5VV ND2 H6 SING N N 16 5VV ND2 H7 SING N N 17 5VV C OXT SING N N 18 5VV OXT HXT SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5VV InChI InChI 1.06 "InChI=1S/C5H8N2O5/c6-3(8)1-2(4(9)10)7-5(11)12/h2,7H,1H2,(H2,6,8)(H,9,10)(H,11,12)/t2-/m0/s1" 5VV InChIKey InChI 1.06 ZDDDMWAFNPCPER-REOHCLBHSA-N 5VV SMILES_CANONICAL CACTVS 3.385 "NC(=O)C[C@H](NC(O)=O)C(O)=O" 5VV SMILES CACTVS 3.385 "NC(=O)C[CH](NC(O)=O)C(O)=O" 5VV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H](C(=O)O)NC(=O)O)C(=O)N" 5VV SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C(=O)O)NC(=O)O)C(=O)N" # _pdbx_chem_comp_identifier.comp_id 5VV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-azanyl-2-(carboxyamino)-4-oxidanylidene-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5VV "Create component" 2015-12-14 EBI 5VV "Initial release" 2016-05-18 RCSB 5VV "Other modification" 2019-09-04 EBI 5VV "Modify backbone" 2023-11-03 PDBE 5VV "Other modification" 2024-06-28 PDBE #